Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Reverse (-)

60485145 .. 60487887

Gene Structure 2743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG375800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTCAAACCATGTTGCTCATGTCTAGTAGCAGTGTGGCTAAAACCAATGTGGTCGATTTGAAGTCATCGGACCCTTTACTTCAGCTACAAGTTCAGAGACTTAGACCCAAGTCATTCTCTCAGCTTGTGTTCAGGCCACTCCCTTCTTCGACCACTTCGTTGAGATCATCAGGTGTGGTTGCTCTCTTCAAATCGAAAACCAAAGCCCCCGCCAAGAAGGCACCATCGCCGAAGCCCAAAGTTGAATCTGGTATCTTTGGAACATCCGGAGGCATTGGTTTTACAAAGGAGAATGAGCTCTTCGTGGGTCGTGTTGCCATGATTGGTTTTGCTGCATCCTTGTTGGGAGAAGCAATTACAGGAAAAGGAATTCTTTCACAATTGAATTTGGAGACTGGAATTCCAATCTATGAAGCTGAGCCTCTTCTTCTCTTCTTCATCCTTTTCACTCTGCTTGGAGCCATTGGAGCTCTTGGTGACCGTGGTAACTTTGTGGATGATCCTCCCACCGGAATTGAGGGGGCGGTTATCCCTCCAGGGAAAGGTATCAGAGCTGCCTTGGGTCTCAAGGAAGGAGGTCCTCTGTTCGGATTCACCAAGGCGAATGAGCTATTCGTAGGAAGATTGGCTCAATTGGGATTTGCATTCTCTCTAATAGGAGAGATCATCACAGGGAAGGGAGCTCTAGCCCAATTAAACATTGAGACTGGAGTCCCCATCAATGAAATCGAACCTCTTGTGTTGCTCAATGTCGTCTTCTTCTTCCTTGCTGCAGTGAACCCCGGGACCGGTAAATTCATCACAGATGAAGGTGAAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

275

Amino Acids

28.89

Weight (kDa)

7.86

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	95 - 219	1e-07	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	2 cut(s)	213, 527
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	4 cut(s)	372, 388, 402, 797
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	4 cut(s)	512, 545, 590, 791
AgeI	ACCGGT	1 cut(s)	791
AgsI	TTSAA	4 cut(s)	64, 193, 248, 388
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	8 cut(s)	88, 127, 301, 419, 473, 557, 613, 686
AluI	AGCT	8 cut(s)	88, 127, 301, 419, 473, 557, 613, 686
Alw21I	GWGCWC	3 cut(s)	303, 475, 688
Alw26I	GTCTC	4 cut(s)	94, 389, 572, 701
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	785
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	335, 557, 773
ApoI	RAATTY	4 cut(s)	372, 388, 402, 797
AsiGI	ACCGGT	1 cut(s)	791
Asp700I	GAANNNNTTC	1 cut(s)	376
AspS9I	GGNCC	3 cut(s)	73, 581, 789
AsuC2I	CCSGG	2 cut(s)	786, 787
AsuHPI	GGTGA	3 cut(s)	491, 589, 827
AvaI	CYCGRG	1 cut(s)	785
AvaII	GGWCC	3 cut(s)	73, 581, 789
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	3 cut(s)	303, 475, 688
BbsI	GAAGAC	1 cut(s)	751
Bbv12I	GWGCWC	3 cut(s)	303, 475, 688
BbvI	GCAGC	3 cut(s)	322, 544, 760
BccI	CCATC	2 cut(s)	235, 728
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	2 cut(s)	786, 787
BcoDI	GTCTC	4 cut(s)	94, 389, 572, 701
BfaI	CTAG	2 cut(s)	27, 689
BfmI	CTRYAG	1 cut(s)	774
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	3 cut(s)	336, 558, 774
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	3 cut(s)	337, 559, 775
Bme1390I	CCNGG	3 cut(s)	540, 786, 787
Bme18I	GGWCC	3 cut(s)	73, 581, 789
BmeT110I	CYCGRG	1 cut(s)	785
BmgT120I	GGNCC	3 cut(s)	73, 581, 789
BmiI	GGNNCC	4 cut(s)	75, 225, 463, 790
BmrFI	CCNGG	3 cut(s)	540, 786, 787
BmsI	GCATC	1 cut(s)	347
BoxI	GACNNNNGTC	2 cut(s)	112, 713
BpiI	GAAGAC	1 cut(s)	751
BpmI	CTGGAG	2 cut(s)	522, 732
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	786, 787
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	6 cut(s)	484, 539, 561, 600, 784, 785
BsaWI	WCCGGW	3 cut(s)	269, 512, 791
Bsc4I	CCNNNNNNNGG	4 cut(s)	512, 545, 590, 791
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	2 cut(s)	403, 715
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	6 cut(s)	484, 539, 561, 600, 784, 785
BseGI	GGATG	4 cut(s)	266, 338, 441, 505
BseLI	CCNNNNNNNGG	4 cut(s)	512, 545, 590, 791
BseMII	CTCAG	2 cut(s)	137, 411
BseNI	ACTGG	2 cut(s)	403, 715
BseXI	GCAGC	3 cut(s)	322, 544, 760
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	791
BsiHKAI	GWGCWC	3 cut(s)	303, 475, 688
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	4 cut(s)	270, 513, 786, 792
BslFI	GGGAC	2 cut(s)	701, 802
BslI	CCNNNNNNNGG	4 cut(s)	512, 545, 590, 791
BsmAI	GTCTC	4 cut(s)	94, 389, 572, 701
BsmFI	GGGAC	2 cut(s)	701, 802
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	785
Bsp1286I	GDGCHC	3 cut(s)	303, 475, 688
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	167, 502, 666
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	2 cut(s)	213, 527
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	136, 412
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	4 cut(s)	75, 225, 463, 790
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	1 cut(s)	497
BspQI	GCTCTTC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	791
BsrI	ACTGG	2 cut(s)	403, 715
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	6 cut(s)	484, 539, 561, 600, 784, 785
BssMI	GATC	3 cut(s)	167, 502, 666
BssT1I	CCWWGG	2 cut(s)	561, 600
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	5 cut(s)	194, 308, 432, 440, 816
BstDEI	CTNAG	3 cut(s)	104, 123, 420
BstDSI	CCRYGG	1 cut(s)	484
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	4 cut(s)	266, 338, 441, 505
BstKTI	GATC	3 cut(s)	170, 505, 669
BstMAI	GTCTC	4 cut(s)	94, 389, 572, 701
BstMBI	GATC	3 cut(s)	167, 502, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 470
BstNI	CCWGG	1 cut(s)	540
BstPAI	GACNNNNGTC	2 cut(s)	112, 713
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	538, 784, 785
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	3 cut(s)	322, 544, 760
BstV2I	GAAGAC	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	484
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	4 cut(s)	266, 338, 441, 505
BtsI	GCAGTG	2 cut(s)	40, 783
BtsIMutI	CAGTG	2 cut(s)	40, 783
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	3 cut(s)	73, 581, 789
Cfr9I	CCCGGG	1 cut(s)	785
CspAI	ACCGGT	1 cut(s)	791
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	3 cut(s)	13, 22, 322
DdeI	CTNAG	3 cut(s)	104, 123, 420
DpnI	GATC	3 cut(s)	169, 504, 668
DpnII	GATC	3 cut(s)	167, 502, 666
Eam1104I	CTCTTC	5 cut(s)	194, 308, 432, 440, 816
EarI	CTCTTC	5 cut(s)	194, 308, 432, 440, 816
Ecl136II	GAGCTC	3 cut(s)	301, 473, 686
Eco130I	CCWWGG	2 cut(s)	561, 600
Eco24I	GRGCYC	3 cut(s)	303, 475, 688
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	3 cut(s)	73, 581, 789
Eco53kI	GAGCTC	3 cut(s)	301, 473, 686
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	785
Eco91I	GGTNACC	1 cut(s)	479
EcoICRI	GAGCTC	3 cut(s)	301, 473, 686
EcoO109I	RGGNCCY	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	479
EcoRI	GAATTC	2 cut(s)	372, 402
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	561, 600
EcoT38I	GRGCYC	3 cut(s)	303, 475, 688
ErhI	CCWWGG	2 cut(s)	561, 600
FaeI	CATG	3 cut(s)	16, 25, 325
FaiI	YATR	4 cut(s)	14, 23, 323, 414
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	2 cut(s)	701, 802
FatI	CATG	3 cut(s)	12, 21, 321
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	336, 558, 774
FokI	GGATG	4 cut(s)	253, 325, 428, 512
FriOI	GRGCYC	3 cut(s)	303, 475, 688
Fsp4HI	GCNGC	3 cut(s)	336, 558, 774
FspBI	CTAG	2 cut(s)	27, 689
GluI	GCNGC	3 cut(s)	336, 558, 774
GsuI	CTGGAG	2 cut(s)	522, 732
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	4 cut(s)	270, 513, 786, 792
Hin1II	CATG	3 cut(s)	16, 25, 325
HinfI	GANTC	3 cut(s)	248, 594, 714
HpaII	CCGG	4 cut(s)	270, 513, 786, 792
HphI	GGTGA	3 cut(s)	491, 589, 827
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	4 cut(s)	73, 99, 554, 593
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	781
HpyAV	CCTTC	5 cut(s)	156, 214, 569, 673, 806
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	3 cut(s)	338, 647, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 470
HpyF3I	CTNAG	3 cut(s)	104, 123, 420
Hsp92II	CATG	3 cut(s)	16, 25, 325
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	167, 502, 666
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	3 cut(s)	461, 470, 683
Lsp1109I	GCAGC	3 cut(s)	322, 544, 760
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	2 cut(s)	27, 689
MaeIII	GTNAC	2 cut(s)	479, 488
MalI	GATC	3 cut(s)	169, 504, 668
MboI	GATC	3 cut(s)	167, 502, 666
MfeI	CAATTG	2 cut(s)	383, 635
MhlI	GDGCHC	3 cut(s)	303, 475, 688
MluCI	AATT	9 cut(s)	357, 372, 383, 388, 402, 516, 635, 695, 797
MlyI	GAGTC	1 cut(s)	723
MnlI	CCTC	8 cut(s)	266, 435, 514, 516, 546, 572, 594, 747
MroI	TCCGGA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	376
MseI	TTAA	1 cut(s)	698
MspI	CCGG	4 cut(s)	270, 513, 786, 792
MspR9I	CCNGG	3 cut(s)	540, 786, 787
MunI	CAATTG	2 cut(s)	383, 635
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	221, 470
NciI	CCSGG	2 cut(s)	786, 787
NdeII	GATC	3 cut(s)	167, 502, 666
NlaIII	CATG	3 cut(s)	16, 25, 325
NlaIV	GGNNCC	4 cut(s)	75, 225, 463, 790
NmuCI	GTSAC	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	248, 594
PinAI	ACCGGT	1 cut(s)	791
PkrI	GCNGC	3 cut(s)	337, 559, 775
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	581
PshAI	GACNNNNGTC	2 cut(s)	112, 713
Psp124BI	GAGCTC	3 cut(s)	303, 475, 688
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	538
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	4 cut(s)	75, 225, 463, 790
PspPI	GGNCC	3 cut(s)	73, 581, 789
PspPPI	RGGWCCY	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	778
SacI	GAGCTC	3 cut(s)	303, 475, 688
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	3 cut(s)	336, 558, 774
Sau3AI	GATC	3 cut(s)	167, 502, 666
Sau96I	GGNCC	3 cut(s)	73, 581, 789
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	3 cut(s)	540, 786, 787
SduI	GDGCHC	3 cut(s)	303, 475, 688
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	3 cut(s)	73, 581, 789
SmaI	CCCGGG	1 cut(s)	787
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	9 cut(s)	357, 372, 383, 388, 402, 516, 635, 695, 797
SsiI	CCGC	2 cut(s)	213, 527
SspMI	CTAG	2 cut(s)	27, 689
SstI	GAGCTC	3 cut(s)	303, 475, 688
StyD4I	CCNGG	3 cut(s)	538, 784, 785
StyI	CCWWGG	2 cut(s)	561, 600
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	4 cut(s)	57, 152, 197, 732
TasI	AATT	9 cut(s)	357, 372, 383, 388, 402, 516, 635, 695, 797
TfiI	GAWTC	2 cut(s)	248, 594
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	2 cut(s)	40, 783
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	3 cut(s)	335, 557, 773
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	5 cut(s)	429, 430, 741, 790, 825
TspMI	CCCGGG	1 cut(s)	785
TspRI	CASTG	2 cut(s)	40, 783
VpaK11BI	GGWCC	3 cut(s)	73, 581, 789
XapI	RAATTY	4 cut(s)	372, 388, 402, 797
XmaI	CCCGGG	1 cut(s)	785
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	2 cut(s)	27, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.