Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Forward (+)

19092894 .. 19095947

Gene Structure 3054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1162600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTCAAACCATGCTTCTCATGTCTAGTAGTGTGTCTTCAGGCCATGTTGTGGACTTGAAGTCCTCAGACCCTTTACTCCAAGTACAAGCTCAAAGACTTAGGCCTAAGTCTTTCTCTCAACTTGTTTTCAGAGCCCTCCCTTCATCCTCTTCAGCCTCGTCGTCGTCTACAAGGATTTCGACCGTTGTCGCTCTCTTCAAATCGAAAACTAAAGCTCCTGCCAAGAAGGCACCACCGCCGAAGCCCAAGGTTGAAGACGGTATCTTTGGAACCTCTGGGGGCATTGGTTTCACCAAGCAAAATGAGCTCTTTGTTGGTCGGGTTGCCATGATTGGCTTTGCTGCATCATTGTTGGGAGAAGCAATTACAGGGAAAGGGATTCTTTCCCAATTGAATTTGGAAACTGGAATTCCCATCTATGAAGCTGAACCCCTTCTTCTCTTCTTCATCCTTTTCACCCTGCTTGGAGCCATTGGAGCTCTAGGTGACCGTGGTAGATTCGTCGATGACCCGCCCGCTGGAATTGAAGGGGCAGTGATCCCTCCAGGCAAAGGATTGAAATCAGCCCTGGGACTCAAGGAAGGAGGTCCTCTATTTGGATTCACAAAGGCAAATGAGCTATTTGTGGGAAGATTGGCACAGTTGGGATTTGCATTCTCCCTAATAGGAGAAATCATTACAGGGAAGGGAGCTCTAGCCCAGTTAAACATTGAGACTGGAGTCCCCATCAGCGAAATCGAACCCCTTGTGTTGCTCAACGTTGTCTTCTTCTTCATCGCTGCGGTGAATCCCGGAACTGGTAAATTCATCACAGATGTGGATGAAGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

279

Amino Acids

29.08

Weight (kDa)

7.88

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	98 - 222	1.6e-07	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	4 cut(s)	239, 515, 519, 785
AclI	AACGTT	1 cut(s)	762
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	3 cut(s)	397, 411, 806
AcuI	CTGAAG	2 cut(s)	24, 138
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	5 cut(s)	52, 521, 554, 599, 800
AgsI	TTSAA	6 cut(s)	61, 202, 257, 397, 530, 562
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	547, 570
AleI	CACNNNNGTG	1 cut(s)	818
AluBI	AGCT	7 cut(s)	92, 218, 310, 428, 482, 622, 695
AluI	AGCT	7 cut(s)	92, 218, 310, 428, 482, 622, 695
Alw21I	GWGCWC	3 cut(s)	312, 484, 697
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	2 cut(s)	43, 104
ApeKI	GCWGC	2 cut(s)	344, 782
ApoI	RAATTY	3 cut(s)	397, 411, 806
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	590
AsuC2I	CCSGG	1 cut(s)	795
AsuHPI	GGTGA	4 cut(s)	286, 451, 500, 799
AvaII	GGWCC	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	4 cut(s)	139, 312, 484, 697
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
BbsI	GAAGAC	3 cut(s)	30, 264, 760
Bbv12I	GWGCWC	3 cut(s)	312, 484, 697
BbvI	GCAGC	2 cut(s)	331, 769
BccI	CCATC	2 cut(s)	425, 737
BciT130I	CCWGG	2 cut(s)	549, 572
BcnI	CCSGG	1 cut(s)	795
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	4 cut(s)	27, 485, 698, 835
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	345, 783
BlsI	GCNGC	2 cut(s)	346, 784
Bme1390I	CCNGG	3 cut(s)	549, 572, 795
Bme18I	GGWCC	1 cut(s)	590
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	3 cut(s)	234, 274, 472
BmrFI	CCNGG	3 cut(s)	549, 572, 795
BmrI	ACTGGG	1 cut(s)	697
BmsI	GCATC	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	697
BoxI	GACNNNNGTC	2 cut(s)	188, 722
BpiI	GAAGAC	3 cut(s)	30, 264, 760
BpmI	CTGGAG	2 cut(s)	531, 741
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	795
BsaBI	GATNNNNATC	1 cut(s)	562
BsaJI	CCNNGG	4 cut(s)	249, 493, 570, 571
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 521, 554, 599, 800
Bse1I	ACTGG	4 cut(s)	412, 703, 724, 805
Bse8I	GATNNNNATC	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	549, 572
BseDI	CCNNGG	4 cut(s)	249, 493, 570, 571
BseGI	GGATG	3 cut(s)	146, 450, 829
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	5 cut(s)	52, 521, 554, 599, 800
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	4 cut(s)	412, 703, 724, 805
BseXI	GCAGC	2 cut(s)	331, 769
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	45, 106
BshNI	GGYRCC	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	3 cut(s)	312, 484, 697
BsiSI	CCGG	1 cut(s)	795
BslFI	GGGAC	2 cut(s)	588, 710
BslI	CCNNNNNNNGG	5 cut(s)	52, 521, 554, 599, 800
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	2 cut(s)	588, 710
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	2 cut(s)	45, 106
Bsp1286I	GDGCHC	4 cut(s)	139, 312, 484, 697
Bsp143I	GATC	1 cut(s)	540
BspACI	CCGC	4 cut(s)	239, 515, 519, 785
BspANI	GGCC	2 cut(s)	45, 106
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	234, 274, 472
BspPI	GGATC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	232
BsrI	ACTGG	4 cut(s)	412, 703, 724, 805
BssECI	CCNNGG	4 cut(s)	249, 493, 570, 571
BssMI	GATC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	549, 572
Bst4CI	ACNGT	4 cut(s)	187, 263, 494, 645
Bst6I	CTCTTC	3 cut(s)	157, 203, 449
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	3 cut(s)	67, 101, 108
BstDSI	CCRYGG	1 cut(s)	493
BstEII	GGTNACC	1 cut(s)	488
BstF5I	GGATG	3 cut(s)	146, 450, 829
BstKTI	GATC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	1 cut(s)	540
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 307, 479
BstNI	CCWGG	2 cut(s)	549, 572
BstPAI	GACNNNNGTC	2 cut(s)	188, 722
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	3 cut(s)	547, 570, 793
BstV1I	GCAGC	2 cut(s)	331, 769
BstV2I	GAAGAC	3 cut(s)	30, 264, 760
BsuRI	GGCC	2 cut(s)	45, 106
BtgI	CCRYGG	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	763
BtsCI	GGATG	3 cut(s)	146, 450, 829
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	4 cut(s)	13, 22, 47, 331
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	3 cut(s)	67, 101, 108
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	157, 203, 449
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	3 cut(s)	157, 203, 449
Ecl136II	GAGCTC	3 cut(s)	310, 482, 695
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	4 cut(s)	139, 312, 484, 697
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	3 cut(s)	310, 482, 695
Eco57I	CTGAAG	2 cut(s)	24, 138
Eco91I	GGTNACC	1 cut(s)	488
EcoICRI	GAGCTC	3 cut(s)	310, 482, 695
EcoO109I	RGGNCCY	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	547, 570
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	4 cut(s)	139, 312, 484, 697
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	4 cut(s)	16, 25, 50, 334
FaiI	YATR	5 cut(s)	14, 23, 48, 332, 423
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	2 cut(s)	588, 710
FatI	CATG	4 cut(s)	12, 21, 46, 330
FauI	CCCGC	2 cut(s)	522, 526
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	345, 783
FokI	GGATG	2 cut(s)	133, 437
FriOI	GRGCYC	4 cut(s)	139, 312, 484, 697
Fsp4HI	GCNGC	2 cut(s)	345, 783
FspBI	CTAG	4 cut(s)	27, 485, 698, 835
GluI	GCNGC	2 cut(s)	345, 783
GsuI	CTGGAG	2 cut(s)	531, 741
HaeIII	GGCC	2 cut(s)	45, 106
HapII	CCGG	1 cut(s)	795
Hin1II	CATG	4 cut(s)	16, 25, 50, 334
HinfI	GANTC	6 cut(s)	382, 501, 576, 603, 723, 790
HpaII	CCGG	1 cut(s)	795
HphI	GGTGA	4 cut(s)	286, 451, 500, 799
Hpy166II	GTNNAC	2 cut(s)	55, 171
Hpy188I	TCNGA	2 cut(s)	70, 134
Hpy8I	GTNNAC	2 cut(s)	55, 171
Hpy99I	CGWCG	3 cut(s)	166, 169, 509
HpyAV	CCTTC	6 cut(s)	153, 223, 446, 524, 578, 682
HpyCH4III	ACNGT	4 cut(s)	187, 263, 494, 645
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	2 cut(s)	347, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 307, 479
HpyF3I	CTNAG	3 cut(s)	67, 101, 108
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	4 cut(s)	16, 25, 50, 334
Kzo9I	GATC	1 cut(s)	540
LmnI	GCTCC	4 cut(s)	223, 470, 479, 692
Lsp1109I	GCAGC	2 cut(s)	331, 769
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	4 cut(s)	27, 485, 698, 835
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MfeI	CAATTG	1 cut(s)	392
MhlI	GDGCHC	4 cut(s)	139, 312, 484, 697
MluCI	AATT	6 cut(s)	366, 392, 397, 411, 525, 806
MlyI	GAGTC	2 cut(s)	570, 732
MnlI	CCTC	8 cut(s)	76, 149, 160, 169, 286, 555, 581, 603
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	1 cut(s)	707
MslI	CAYNNNNRTG	1 cut(s)	818
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	795
MspR9I	CCNGG	3 cut(s)	549, 572, 795
MunI	CAATTG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	549, 572
MwoI	GCNNNNNNNGC	3 cut(s)	230, 307, 479
NciI	CCSGG	1 cut(s)	795
NdeII	GATC	1 cut(s)	540
NlaIII	CATG	4 cut(s)	16, 25, 50, 334
NlaIV	GGNNCC	3 cut(s)	234, 274, 472
NmuCI	GTSAC	1 cut(s)	488
OliI	CACNNNNGTG	1 cut(s)	818
PasI	CCCWGGG	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	106
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	4 cut(s)	382, 501, 603, 790
PflMI	CCANNNNNTGG	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	2 cut(s)	346, 784
PleI	GAGTC	2 cut(s)	570, 731
PpsI	GAGTC	2 cut(s)	570, 731
PpuMI	RGGWCCY	1 cut(s)	590
PshAI	GACNNNNGTC	2 cut(s)	188, 722
Psp124BI	GAGCTC	3 cut(s)	312, 484, 697
Psp1406I	AACGTT	1 cut(s)	762
Psp5II	RGGWCCY	1 cut(s)	590
Psp6I	CCWGG	2 cut(s)	547, 570
PspEI	GGTNACC	1 cut(s)	488
PspGI	CCWGG	2 cut(s)	547, 570
PspN4I	GGNNCC	3 cut(s)	234, 274, 472
PspPI	GGNCC	1 cut(s)	590
PspPPI	RGGWCCY	1 cut(s)	590
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	818
SacI	GAGCTC	3 cut(s)	312, 484, 697
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	2 cut(s)	345, 783
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	2 cut(s)	570, 732
ScrFI	CCNGG	3 cut(s)	549, 572, 795
SduI	GDGCHC	4 cut(s)	139, 312, 484, 697
SfaNI	GCATC	1 cut(s)	356
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	6 cut(s)	366, 392, 397, 411, 525, 806
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	4 cut(s)	239, 515, 519, 785
SspMI	CTAG	4 cut(s)	27, 485, 698, 835
SstI	GAGCTC	3 cut(s)	312, 484, 697
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	3 cut(s)	547, 570, 793
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	4 cut(s)	187, 263, 494, 645
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	4 cut(s)	182, 206, 507, 741
TasI	AATT	6 cut(s)	366, 392, 397, 411, 525, 806
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	4 cut(s)	382, 501, 603, 790
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	2 cut(s)	344, 782
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	5 cut(s)	135, 438, 439, 766, 799
TspRI	CASTG	1 cut(s)	543
Van91I	CCANNNNNTGG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	3 cut(s)	397, 411, 806
XmiI	GTMKAC	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	4 cut(s)	27, 485, 698, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.