Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Reverse (-)

56679112 .. 56682524

Gene Structure 3413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG368200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTATAGTAATCATTCATATTATTATCATGATACGTCATGCCATGTTCTTCGAGTGATTCTAGAAGCAAAAACATACTCGAATATTGAGTACTCATGCAATTTACATTATTTTTCTTTCAAACCTTATTGCATATTGCAGGCATCCTTGCTGGGAGAAGCAATTACAGGAAAAGGAATTCTTTCACAATTGAATTTGGAGACTGGAGTTCCAATCTATGAAGCTGAGCCTCTTCTTCTCTTCTTCATCCTTTTCACTCTGCTTGGAGCCATTGGAGCTCTTGGTGACCGTGGTAGCTTTGTGGATGATCCTCCCACCGGAATTGAGGGGGCCGTTATCCCTCCAGGGAAAGGTATCAGAGGTGCCTTGGGTCTCAAGGAAGGAGGTCCTCTGTTCGGATTCACCAAGGCCAATGAGCTATTCGTAGGAAGATTGGCTCAATTGGGATTTGCATTCTCTCTAATAGGAGAGATCATCACAGGGAAAGGAGCTCTAGCCCAATTAAACATTGAGACTGGAGTCCCCATCAATGAAATCGAACCTCTTGTGTTGCTCAATGTCGTCTTCTTCTTCCTTGCTGCGGTGAACCCCGGGACCGGTAAATTCATCACAGATGAAGGTGAAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

210

Amino Acids

22.65

Weight (kDa)

4.82

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AciI	CCGC	1 cut(s)	581
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	3 cut(s)	177, 193, 602
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	5 cut(s)	317, 350, 395, 580, 596
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	2 cut(s)	121, 193
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	5 cut(s)	224, 278, 297, 418, 491
AluI	AGCT	5 cut(s)	224, 278, 297, 418, 491
Alw21I	GWGCWC	2 cut(s)	280, 493
Alw26I	GTCTC	3 cut(s)	194, 377, 506
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	330, 408
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	3 cut(s)	177, 193, 602
AsiGI	ACCGGT	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	181
AspS9I	GGNCC	3 cut(s)	330, 386, 594
AsuC2I	CCSGG	2 cut(s)	591, 592
AsuHPI	GGTGA	4 cut(s)	296, 394, 595, 632
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	386, 594
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	2 cut(s)	280, 493
BbsI	GAAGAC	1 cut(s)	556
Bbv12I	GWGCWC	2 cut(s)	280, 493
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	2 cut(s)	591, 592
BcoDI	GTCTC	3 cut(s)	194, 377, 506
BfaI	CTAG	2 cut(s)	62, 494
BisI	GCNGC	1 cut(s)	579
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	580
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	345, 591, 592
Bme18I	GGWCC	2 cut(s)	386, 594
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	3 cut(s)	330, 386, 594
BmiI	GGNNCC	4 cut(s)	268, 331, 364, 595
BmrFI	CCNGG	3 cut(s)	345, 591, 592
BmsI	GCATC	1 cut(s)	152
BoxI	GACNNNNGTC	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	556
BpmI	CTGGAG	3 cut(s)	225, 327, 537
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	591, 592
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	6 cut(s)	289, 344, 366, 405, 589, 590
BsaWI	WCCGGW	2 cut(s)	317, 596
Bsc4I	CCNNNNNNNGG	5 cut(s)	317, 350, 395, 580, 596
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	208, 520
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	6 cut(s)	289, 344, 366, 405, 589, 590
BseGI	GGATG	3 cut(s)	143, 246, 310
BseLI	CCNNNNNNNGG	5 cut(s)	317, 350, 395, 580, 596
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	208, 520
BseXI	GCAGC	1 cut(s)	565
BseYI	CCCAGC	1 cut(s)	151
BshFI	GGCC	2 cut(s)	332, 410
BshNI	GGYRCC	1 cut(s)	362
BshTI	ACCGGT	1 cut(s)	596
BsiHKAI	GWGCWC	2 cut(s)	280, 493
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	3 cut(s)	318, 591, 597
BslFI	GGGAC	2 cut(s)	506, 607
BslI	CCNNNNNNNGG	5 cut(s)	317, 350, 395, 580, 596
BsmAI	GTCTC	3 cut(s)	194, 377, 506
BsmFI	GGGAC	2 cut(s)	506, 607
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	332, 410
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	2 cut(s)	280, 493
Bsp143I	GATC	2 cut(s)	307, 471
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	581
BspANI	GGCC	2 cut(s)	332, 410
BspCNI	CTCAG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	4 cut(s)	268, 331, 364, 595
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	208, 520
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	6 cut(s)	289, 344, 366, 405, 589, 590
BssMI	GATC	2 cut(s)	307, 471
BssT1I	CCWWGG	2 cut(s)	366, 405
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	3 cut(s)	237, 245, 621
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	289
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	143, 246, 310
BstKTI	GATC	2 cut(s)	310, 474
BstMAI	GTCTC	3 cut(s)	194, 377, 506
BstMBI	GATC	2 cut(s)	307, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	345
BstPAI	GACNNNNGTC	1 cut(s)	518
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	343, 589, 590
BstV1I	GCAGC	1 cut(s)	565
BstV2I	GAAGAC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	332, 410
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	143, 246, 310
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	3 cut(s)	330, 386, 594
Cfr9I	CCCGGG	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	91
CspAI	ACCGGT	1 cut(s)	596
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	4 cut(s)	29, 39, 44, 96
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	309, 473
DpnII	GATC	2 cut(s)	307, 471
Eam1104I	CTCTTC	3 cut(s)	237, 245, 621
EarI	CTCTTC	3 cut(s)	237, 245, 621
Ecl136II	GAGCTC	2 cut(s)	278, 491
Eco130I	CCWWGG	2 cut(s)	366, 405
Eco24I	GRGCYC	2 cut(s)	280, 493
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	386, 594
Eco53kI	GAGCTC	2 cut(s)	278, 491
Eco88I	CYCGRG	1 cut(s)	590
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	278, 491
EcoO109I	RGGNCCY	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	366, 405
EcoT38I	GRGCYC	2 cut(s)	280, 493
ErhI	CCWWGG	2 cut(s)	366, 405
FaeI	CATG	4 cut(s)	32, 42, 47, 99
FaiI	YATR	9 cut(s)	6, 19, 30, 40, 45, 76, 97, 134, 219
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	506, 607
FatI	CATG	4 cut(s)	28, 38, 43, 95
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	3 cut(s)	130, 233, 317
FriOI	GRGCYC	2 cut(s)	280, 493
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	2 cut(s)	62, 494
GluI	GCNGC	1 cut(s)	579
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	3 cut(s)	225, 327, 537
HaeIII	GGCC	2 cut(s)	332, 410
HapII	CCGG	3 cut(s)	318, 591, 597
Hin1II	CATG	4 cut(s)	32, 42, 47, 99
HinfI	GANTC	3 cut(s)	58, 399, 519
HpaII	CCGG	3 cut(s)	318, 591, 597
HphI	GGTGA	4 cut(s)	296, 394, 595, 632
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	2 cut(s)	359, 398
Hpy188III	TCNNGA	2 cut(s)	29, 62
Hpy8I	GTNNAC	1 cut(s)	586
HpyAV	CCTTC	2 cut(s)	374, 611
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	99, 132, 139, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	32, 42, 47, 99
Kzo9I	GATC	2 cut(s)	307, 471
LmnI	GCTCC	3 cut(s)	266, 275, 488
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	62, 494
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	309, 473
MboI	GATC	2 cut(s)	307, 471
MboII	GAAGA	9 cut(s)	41, 224, 227, 232, 235, 441, 556, 559, 562
MfeI	CAATTG	2 cut(s)	188, 440
MhlI	GDGCHC	2 cut(s)	280, 493
MluCI	AATT	9 cut(s)	100, 162, 177, 188, 193, 321, 440, 500, 602
MlyI	GAGTC	1 cut(s)	528
MnlI	CCTC	8 cut(s)	240, 319, 321, 351, 353, 377, 399, 552
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	503
MspI	CCGG	3 cut(s)	318, 591, 597
MspR9I	CCNGG	3 cut(s)	345, 591, 592
MunI	CAATTG	2 cut(s)	188, 440
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	2 cut(s)	591, 592
NdeII	GATC	2 cut(s)	307, 471
NlaIII	CATG	4 cut(s)	32, 42, 47, 99
NlaIV	GGNNCC	4 cut(s)	268, 331, 364, 595
NmuCI	GTSAC	1 cut(s)	284
PagI	TCATGA	1 cut(s)	28
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	58, 399
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	1 cut(s)	580
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
PpuMI	RGGWCCY	1 cut(s)	386
PshAI	GACNNNNGTC	1 cut(s)	518
Psp124BI	GAGCTC	2 cut(s)	280, 493
Psp5II	RGGWCCY	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	343
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	4 cut(s)	268, 331, 364, 595
PspPI	GGNCC	3 cut(s)	330, 386, 594
PspPPI	RGGWCCY	1 cut(s)	386
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacI	GAGCTC	2 cut(s)	280, 493
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	2 cut(s)	307, 471
Sau96I	GGNCC	3 cut(s)	330, 386, 594
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	3 cut(s)	345, 591, 592
SduI	GDGCHC	2 cut(s)	280, 493
SfaNI	GCATC	1 cut(s)	152
SinI	GGWCC	2 cut(s)	386, 594
SmaI	CCCGGG	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	9 cut(s)	100, 162, 177, 188, 193, 321, 440, 500, 602
SsiI	CCGC	1 cut(s)	581
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	2 cut(s)	62, 494
SstI	GAGCTC	2 cut(s)	280, 493
StyD4I	CCNGG	3 cut(s)	343, 589, 590
StyI	CCWWGG	2 cut(s)	366, 405
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	3 cut(s)	52, 80, 537
TasI	AATT	9 cut(s)	100, 162, 177, 188, 193, 321, 440, 500, 602
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	58, 399
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	6 cut(s)	6, 234, 235, 546, 595, 630
TspMI	CCCGGG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	386, 594
XapI	RAATTY	3 cut(s)	177, 193, 602
XbaI	TCTAGA	1 cut(s)	61
XmaI	CCCGGG	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	2 cut(s)	62, 494
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.