Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Forward (+)

13086094 .. 13088646

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14050.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTCAAACCATGCTTCTCATGTCTAGTAGTGTGTCTTCAGGCCATGTTGTGGACTTGAAGTCCTCAGACCCTTTACTCCAAGTACAAGCTCAAAGGCTTAGGCCTAAGTCTTTCTCTCAACTTGTTTGCAGACCCTCTTCTGCAGCGTCGTCATCGTCTACGAGGATTTCGACCGTCGTCGCTCTCTTCAAATCGAAAACCAAAGCTCCTGCCAAGAAGGCACCACCGCCGAAGCCCAAGGTTGAAGACGGTATCTTTGGAACCTCTGGGGGCATTGGTTTCACCAAGCAAAATGAGCTCTTTGTTGGTCGGGTTGCCATGATTGGCTTTGCTGCATCATTGTTGGGAGAAGCAATTACAGGGAAAGGGATTCTTTCCCAATTGAATTTGGAAACTGGAATTCCCATCTATGAAGCTGAACCCCTTCTTCTCTTCTTCATCCTTTTCACCCTGCTTGGAGCCATTGGAGCTCTAGGTGACCGTGGTAGATTTGTCGATGACCCGCCCGCTGGAATTGAAGGGGCAGTGATCCCTCCAGGCAAAGGATTGAAATCAGCCTTGGGTCTCAAGGAAGGAGGTCCTCTATTTGGATTCACAAAGGCGAATGAGCTATTTGTGGGAAGATTGGCACAGTTGGGATTTGCATTCTCCCTAATAGGAGAAATCATTACAGGGAAGGGAGCTCTAGCCCAGTTAAACATTGAGACTGGAGTCCCCATCAGCGAAATCGAACCCCTTGTGTTGCTCAACGTTGTCTTCTTCTTCATCGCTGCGGTGAATCCTGGAACTGGTAAATTCATCACAGATGTGGATGAAGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

276

Amino Acids

28.74

Weight (kDa)

7.78

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccB7I	CCANNNNNTGG	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	161
AciI	CCGC	4 cut(s)	230, 506, 510, 776
AclI	AACGTT	1 cut(s)	753
AclWI	GGATC	1 cut(s)	526
AcsI	RAATTY	3 cut(s)	388, 402, 797
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	5 cut(s)	52, 512, 545, 590, 791
AgsI	TTSAA	6 cut(s)	61, 193, 248, 388, 521, 553
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	538, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AleI	CACNNNNGTG	1 cut(s)	809
AluBI	AGCT	7 cut(s)	92, 209, 301, 419, 473, 613, 686
AluI	AGCT	7 cut(s)	92, 209, 301, 419, 473, 613, 686
Alw21I	GWGCWC	3 cut(s)	303, 475, 688
Alw26I	GTCTC	2 cut(s)	572, 701
AlwI	GGATC	1 cut(s)	526
AoxI	GGCC	2 cut(s)	43, 104
ApeKI	GCWGC	3 cut(s)	146, 335, 773
ApoI	RAATTY	3 cut(s)	388, 402, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	4 cut(s)	277, 442, 491, 790
AvaII	GGWCC	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	3 cut(s)	303, 475, 688
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
BbsI	GAAGAC	3 cut(s)	30, 255, 751
Bbv12I	GWGCWC	3 cut(s)	303, 475, 688
BbvI	GCAGC	3 cut(s)	158, 322, 760
BccI	CCATC	2 cut(s)	416, 728
BciT130I	CCWGG	2 cut(s)	540, 786
BcoDI	GTCTC	2 cut(s)	572, 701
BfaI	CTAG	4 cut(s)	27, 476, 689, 826
BfmI	CTRYAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	3 cut(s)	147, 336, 774
BlsI	GCNGC	3 cut(s)	148, 337, 775
Bme1390I	CCNGG	2 cut(s)	540, 786
Bme18I	GGWCC	1 cut(s)	581
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	3 cut(s)	225, 265, 463
BmrFI	CCNGG	2 cut(s)	540, 786
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	1 cut(s)	347
BmuI	ACTGGG	1 cut(s)	688
BoxI	GACNNNNGTC	2 cut(s)	179, 713
BpiI	GAAGAC	3 cut(s)	30, 255, 751
BpmI	CTGGAG	2 cut(s)	522, 732
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	240, 484, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 512, 545, 590, 791
Bse1I	ACTGG	4 cut(s)	403, 694, 715, 796
Bse8I	GATNNNNATC	1 cut(s)	553
BseBI	CCWGG	2 cut(s)	540, 786
BseDI	CCNNGG	3 cut(s)	240, 484, 561
BseGI	GGATG	2 cut(s)	441, 820
BseJI	GATNNNNATC	1 cut(s)	553
BseLI	CCNNNNNNNGG	5 cut(s)	52, 512, 545, 590, 791
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	4 cut(s)	403, 694, 715, 796
BseXI	GCAGC	3 cut(s)	158, 322, 760
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	45, 106
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	3 cut(s)	303, 475, 688
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	5 cut(s)	52, 512, 545, 590, 791
BsmAI	GTCTC	2 cut(s)	572, 701
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	2 cut(s)	45, 106
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	3 cut(s)	303, 475, 688
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	4 cut(s)	230, 506, 510, 776
BspANI	GGCC	2 cut(s)	45, 106
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	225, 265, 463
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	572
BsrI	ACTGG	4 cut(s)	403, 694, 715, 796
BssECI	CCNNGG	3 cut(s)	240, 484, 561
BssMI	GATC	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	240, 561
Bst2UI	CCWGG	2 cut(s)	540, 786
Bst4CI	ACNGT	4 cut(s)	178, 254, 485, 636
Bst6I	CTCTTC	3 cut(s)	145, 194, 440
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	3 cut(s)	67, 101, 108
BstDSI	CCRYGG	1 cut(s)	484
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	2 cut(s)	441, 820
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	2 cut(s)	572, 701
BstMBI	GATC	1 cut(s)	531
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 298, 470
BstNI	CCWGG	2 cut(s)	540, 786
BstPAI	GACNNNNGTC	2 cut(s)	179, 713
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	538, 784
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	158, 322, 760
BstV2I	GAAGAC	3 cut(s)	30, 255, 751
BsuRI	GGCC	2 cut(s)	45, 106
BtgI	CCRYGG	1 cut(s)	484
BtgZI	GCGATG	1 cut(s)	754
BtsCI	GGATG	2 cut(s)	441, 820
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	581
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	4 cut(s)	13, 22, 47, 322
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	3 cut(s)	67, 101, 108
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	145, 194, 440
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	3 cut(s)	145, 194, 440
Ecl136II	GAGCTC	3 cut(s)	301, 473, 686
Eco130I	CCWWGG	2 cut(s)	240, 561
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	3 cut(s)	303, 475, 688
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	581
Eco53kI	GAGCTC	3 cut(s)	301, 473, 686
Eco57I	CTGAAG	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	479
EcoICRI	GAGCTC	3 cut(s)	301, 473, 686
EcoO109I	RGGNCCY	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	402
EcoRII	CCWGG	2 cut(s)	538, 784
EcoT14I	CCWWGG	2 cut(s)	240, 561
EcoT38I	GRGCYC	3 cut(s)	303, 475, 688
ErhI	CCWWGG	2 cut(s)	240, 561
FaeI	CATG	4 cut(s)	16, 25, 50, 325
FaiI	YATR	5 cut(s)	14, 23, 48, 323, 414
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	4 cut(s)	12, 21, 46, 321
FauI	CCCGC	2 cut(s)	513, 517
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	147, 336, 774
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	3 cut(s)	303, 475, 688
Fsp4HI	GCNGC	3 cut(s)	147, 336, 774
FspBI	CTAG	4 cut(s)	27, 476, 689, 826
GluI	GCNGC	3 cut(s)	147, 336, 774
GsuI	CTGGAG	2 cut(s)	522, 732
HaeIII	GGCC	2 cut(s)	45, 106
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	16, 25, 50, 325
HinfI	GANTC	4 cut(s)	373, 594, 714, 781
HphI	GGTGA	4 cut(s)	277, 442, 491, 790
Hpy166II	GTNNAC	2 cut(s)	55, 162
Hpy188I	TCNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	55, 162
Hpy99I	CGWCG	3 cut(s)	154, 182, 185
HpyAV	CCTTC	5 cut(s)	214, 437, 515, 569, 673
HpyCH4III	ACNGT	4 cut(s)	178, 254, 485, 636
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	4 cut(s)	132, 146, 338, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 298, 470
HpyF3I	CTNAG	3 cut(s)	67, 101, 108
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	4 cut(s)	16, 25, 50, 325
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	4 cut(s)	214, 461, 470, 683
Lsp1109I	GCAGC	3 cut(s)	158, 322, 760
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	4 cut(s)	27, 476, 689, 826
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MfeI	CAATTG	1 cut(s)	383
MhlI	GDGCHC	3 cut(s)	303, 475, 688
MluCI	AATT	6 cut(s)	357, 383, 388, 402, 516, 797
MlyI	GAGTC	1 cut(s)	723
MnlI	CCTC	7 cut(s)	76, 148, 159, 277, 546, 572, 594
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	1 cut(s)	698
MslI	CAYNNNNRTG	1 cut(s)	809
MspA1I	CMGCKG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	540, 786
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	2 cut(s)	540, 786
MwoI	GCNNNNNNNGC	3 cut(s)	221, 298, 470
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	4 cut(s)	16, 25, 50, 325
NlaIV	GGNNCC	3 cut(s)	225, 265, 463
NmuCI	GTSAC	1 cut(s)	479
OliI	CACNNNNGTG	1 cut(s)	809
PceI	AGGCCT	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	373, 594, 781
PflMI	CCANNNNNTGG	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	3 cut(s)	148, 337, 775
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	581
PshAI	GACNNNNGTC	2 cut(s)	179, 713
Psp124BI	GAGCTC	3 cut(s)	303, 475, 688
Psp1406I	AACGTT	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	538, 784
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	2 cut(s)	538, 784
PspN4I	GGNNCC	3 cut(s)	225, 265, 463
PspPI	GGNCC	1 cut(s)	581
PspPPI	RGGWCCY	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	809
SacI	GAGCTC	3 cut(s)	303, 475, 688
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	3 cut(s)	147, 336, 774
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	2 cut(s)	540, 786
SduI	GDGCHC	3 cut(s)	303, 475, 688
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	6 cut(s)	357, 383, 388, 402, 516, 797
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	4 cut(s)	230, 506, 510, 776
SspMI	CTAG	4 cut(s)	27, 476, 689, 826
SstI	GAGCTC	3 cut(s)	303, 475, 688
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	538, 784
StyI	CCWWGG	2 cut(s)	240, 561
TaaI	ACNGT	4 cut(s)	178, 254, 485, 636
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	4 cut(s)	173, 197, 498, 732
TasI	AATT	6 cut(s)	357, 383, 388, 402, 516, 797
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	3 cut(s)	373, 594, 781
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	3 cut(s)	146, 335, 773
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	4 cut(s)	429, 430, 757, 790
TspRI	CASTG	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	3 cut(s)	388, 402, 797
XmiI	GTMKAC	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	4 cut(s)	27, 476, 689, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.