AT1G44920

Protein of unknown function (DUF3054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011949
Physical Location & Seq
Reverse (-)
16982904 .. 16984444
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44920.1

Sequence Viewer

Length: 777 bp
ATGAGAATGTTAGTTCTTCGCACTCCCACCGGACCTGTCTCCGCCGTCAGATTCATCACCAAATCCAAACCTTCTCCTTTCTCTTCTCCCGATTCATGGCTCCTCCCTGCACCAAACACTCACCGGAGTCGTCCCCGCGTCGTCCTCGCTCTCTCTAACCCCGACGGAAGCGTCAACTCAAAACCCTCAACCTCAGCTTCTCAAATCCCTTCTTCAGGAGATGAAACAGTTTTCGTGGGTCAAGATAATGTTCCTCTCGAGGGCGTGATTCAATTCGATAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGGTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGATACTCTCCACACAGCTGACCCTTTCATTGCGGGATGGTTTCTGAGTGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACGAGGAATGAAGGGAAAGTCTAAAGCTGTGGTTGCAGCTGCGAAATCTTGGATTGTCGGAACTCCGCTTGGAATTATCATTAGGTCAGCTTCATCAGGTCACATTCCGGCATATAGCTTTGTGTTGGTGACAATGGGAAGTACTGCTGTTTTACTTATAGGATGGAGAGCATTGTTATTCAGTGTGCTTCCTACAGAGTCCAAGAAGAAAGATGATACGTATCGGAAGGGTAGTGCATTCGAGCTATTTGAGTTGCTTACTTCATTGATAAGACGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3054

Protein Analysis

258

Amino Acids

27.71

Weight (kDa)

10.04

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3054 PF11255 114 - 223 1.3e-31 Protein of unknown function (DUF3054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44920
fragaria_vesca FvH4_2g32650
malus_domestica MD08G1077300.v1.1 MD15G1064800.v1.1
prunus_persica Prupe.1G418700_v2.0.a1
pyrus_communis pycom08g06420 pycom15g06150
rosa_chinensis RchiOBHm_Chr6g0310081
rosa_laevigata RLG00000010513
rosa_multiflora Rmu_sc0000294.1_g000021 Rmu_sc0038452.1_g000001
rosa_roxburghii Rroxscaffold_7G00158900
rosa_rugosa Rorug06G0377200 Rorug06G0377200
rosa_samantha Rh6AG491100 Rh6BG500500 Rh6CG505400 Rh6DG491400
rosa_wichuraiana Rw6G042730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccII CGCG 1 cut(s) 138
AciI CCGC 6 cut(s) 42, 136, 338, 446, 485, 560
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 3 cut(s) 96, 215, 260
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 8 cut(s) 197, 356, 431, 521, 533, 584, 612, 739
AluI AGCT 8 cut(s) 197, 356, 431, 521, 533, 584, 612, 739
Alw26I GTCTC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 530, 533
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 4 cut(s) 49, 113, 356, 634
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 520, 542
BccI CCATC 3 cut(s) 444, 651, 765
BceAI ACGGC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 43
BfmI CTRYAG 1 cut(s) 687
BisI GCNGC 2 cut(s) 531, 534
BlsI GCNGC 2 cut(s) 532, 535
BmcAI AGTACT 1 cut(s) 637
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 714
BsaBI GATNNNNATC 1 cut(s) 714
BsaJI CCNNGG 1 cut(s) 391
BsaWI WCCGGW 2 cut(s) 29, 123
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 215, 260
Bse3DI GCAATG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 2 cut(s) 455, 662
BseJI GATNNNNATC 1 cut(s) 714
BseLI CCNNNNNNNGG 3 cut(s) 96, 215, 260
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 207, 449
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 520, 542
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 3 cut(s) 30, 124, 602
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 96, 215, 260
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 257
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 6 cut(s) 42, 136, 338, 446, 485, 560
BspCNI CTCAG 2 cut(s) 206, 450
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 391
Bst4CI ACNGT 2 cut(s) 229, 285
Bst6I CTCTTC 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 714
BstDEI CTNAG 2 cut(s) 193, 458
BstDSI CCRYGG 1 cut(s) 391
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 455, 662
BstFNI CGCG 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 335, 527
BstSFI CTRYAG 1 cut(s) 687
BstSNI TACGTA 1 cut(s) 714
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 520, 542
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 455, 662
BtsIMutI CAGTG 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 2 cut(s) 127, 160
Csp6I GTAC 1 cut(s) 636
CviAII CATG 2 cut(s) 96, 392
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 2 cut(s) 193, 458
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 31
Eco105I TACGTA 1 cut(s) 714
Eco130I CCWWGG 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 99, 395
FaiI YATR 6 cut(s) 97, 393, 483, 607, 609, 653
FaqI GGGAC 1 cut(s) 117
FatI CATG 2 cut(s) 95, 391
FauI CCCGC 3 cut(s) 143, 331, 439
Fnu4HI GCNGC 2 cut(s) 531, 534
FokI GGATG 2 cut(s) 462, 669
Fsp4HI GCNGC 2 cut(s) 531, 534
GluI GCNGC 2 cut(s) 531, 534
HapII CCGG 3 cut(s) 30, 124, 602
HgaI GACGC 2 cut(s) 127, 160
Hin1II CATG 2 cut(s) 99, 395
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 5 cut(s) 51, 92, 127, 268, 692
HpaII CCGG 3 cut(s) 30, 124, 602
HphI GGTGA 4 cut(s) 49, 113, 356, 634
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 4 cut(s) 50, 459, 554, 720
Hpy188III TCNNGA 5 cut(s) 89, 216, 242, 257, 413
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 2 cut(s) 143, 167
HpyAV CCTTC 5 cut(s) 81, 219, 485, 499, 715
HpyCH4III ACNGT 2 cut(s) 229, 285
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 3 cut(s) 110, 530, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 527
HpyF3I CTNAG 2 cut(s) 193, 458
HpySE526I ACGT 1 cut(s) 713
Hsp92II CATG 2 cut(s) 99, 395
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 43, 48, 120, 137, 201, 414, 576, 615
Lsp1109I GCAGC 2 cut(s) 520, 542
MaeII ACGT 1 cut(s) 713
MaeIII GTNAC 2 cut(s) 593, 622
MboII GAAGA 6 cut(s) 8, 75, 204, 291, 358, 712
MluCI AATT 2 cut(s) 272, 567
MlyI GAGTC 2 cut(s) 136, 701
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 8 cut(s) 113, 155, 196, 202, 253, 264, 481, 491
MspA1I CMGCKG 2 cut(s) 431, 533
MspI CCGG 3 cut(s) 30, 124, 602
Mva1269I GAATGC 1 cut(s) 731
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 335, 527
NcoI CCATGG 1 cut(s) 391
NlaIII CATG 2 cut(s) 99, 395
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 2 cut(s) 593, 622
PaeR7I CTCGAG 1 cut(s) 257
PctI GAATGC 1 cut(s) 731
PfeI GAWTC 3 cut(s) 51, 92, 268
PkrI GCNGC 2 cut(s) 532, 535
PleI GAGTC 2 cut(s) 135, 700
PpsI GAGTC 2 cut(s) 135, 700
Ppu21I YACGTR 1 cut(s) 714
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 32
PvuII CAGCTG 2 cut(s) 431, 533
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
SatI GCNGC 2 cut(s) 531, 534
Sau96I GGNCC 1 cut(s) 32
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 2 cut(s) 136, 701
SfcI CTRYAG 1 cut(s) 687
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SnaBI TACGTA 1 cut(s) 714
Sse9I AATT 2 cut(s) 272, 567
SsiI CCGC 6 cut(s) 42, 136, 338, 446, 485, 560
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 2 cut(s) 229, 285
TaiI ACGT 1 cut(s) 716
TaqI TCGA 3 cut(s) 258, 276, 735
TasI AATT 2 cut(s) 272, 567
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 3 cut(s) 51, 92, 268
TscAI CASTG 1 cut(s) 682
TseFI GTSAC 2 cut(s) 593, 622
TseI GCWGC 2 cut(s) 530, 533
Tsp45I GTSAC 2 cut(s) 593, 622
TspDTI ATGAA 8 cut(s) 43, 84, 237, 285, 430, 518, 576, 747
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 213
XhoI CTCGAG 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.