Prupe.1G418700_v2.0.a1

Protein of unknown function (DUF3054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011949
Physical Location & Seq
Reverse (-)
36290812 .. 36293283
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G418700.1

Sequence Viewer

Length: 810 bp
ATGCTAGTGCTCGGCCAAGCTCCAAGCGGAGCCTTATCGGCCAGACGCTGTTCTCTCTCATCCCCCCCCAAATTCACAAACCCAAATCCACCTCTCTTCTCTAACCGCAAACCCAGGTTCGCTTCCAAAGCAAACCCTTCGAAATCTCTCAATATCACGCTTGCGAAGGCTGATGGAGGCATCGATTCGACTTCAGCCGCAACCAAACAGGCCTTTTCTAGCTCACCAGCTCCTCCGCCTCCTCCTTCTTTGGACAATGACCAACCAGTTGTCGTGGGTCAGGAGAACATACCCTTGGAAGGTGTCATTCAGTTCGAGAAGCCCAGTTCGTCTTCTCGTTTACGCAAATGGGGTCGAGTGGCATTGCTTGCTGGTGGGGATGTTTTGGCTTTGCTTACGTTTGCTGCAATTGGAAGATTTAGTCATGGGTTCTCTGTTTTCGAATTTGAAACCCTGCGCACAGCTGACCCTTTTATCGCCGGGTGGTTTTTGAGTGCTTATTTCCTTGGAGGCTATGGGAAGGATGGACGTGGAGTCAATGGTCAGTCAAAGGCTCTTACTGCTACAGCTAAGTCATGGGCCCTGGGGATTCCACTTGGGATAATCATAAGGGCATCAACAGCAGGCCACCTTCCACCATACAAATTTATACTTGTAACAATGGGGAGCACTGCTGTTTTACTTCTTGGATGGAGAGCACTTTTGTATAAATTTCTTCCTGGTGATAAGAGCAAGAAGAGTGATGTATATCGGCGCGGCAGTCCATTTGAATTGTTTGAGTTGCTCACATCGTTAGTACGAAGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3054

Protein Analysis

270

Amino Acids

28.85

Weight (kDa)

10.28

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44920
fragaria_vesca FvH4_2g32650
malus_domestica MD08G1077300.v1.1 MD15G1064800.v1.1
prunus_persica Prupe.1G418700_v2.0.a1
pyrus_communis pycom08g06420 pycom15g06150
rosa_chinensis RchiOBHm_Chr6g0310081
rosa_laevigata RLG00000010513
rosa_multiflora Rmu_sc0000294.1_g000021 Rmu_sc0038452.1_g000001
rosa_roxburghii Rroxscaffold_7G00158900
rosa_rugosa Rorug06G0377200 Rorug06G0377200
rosa_samantha Rh6AG491100 Rh6BG500500 Rh6CG505400 Rh6DG491400
rosa_wichuraiana Rw6G042730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 458
AccII CGCG 1 cut(s) 756
AciI CCGC 5 cut(s) 27, 106, 198, 236, 756
AcoI YGGCCR 2 cut(s) 13, 39
AcsI RAATTY 4 cut(s) 71, 443, 644, 710
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 798
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 2 cut(s) 449, 770
AhdI GACNNNNNGTC 1 cut(s) 533
AjiI CACGTC 1 cut(s) 530
AjnI CCWGG 3 cut(s) 113, 582, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 5 cut(s) 20, 222, 230, 464, 569
AluI AGCT 5 cut(s) 20, 222, 230, 464, 569
Alw21I GWGCWC 3 cut(s) 12, 671, 700
AlwNI CAGNNNCTG 1 cut(s) 48
AoxI GGCC 5 cut(s) 13, 39, 210, 579, 625
ApaI GGGCCC 1 cut(s) 583
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 4 cut(s) 71, 443, 644, 710
AspLEI GCGC 2 cut(s) 459, 756
AspS9I GGNCC 2 cut(s) 579, 580
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 216, 734
AsuII TTCGAA 2 cut(s) 140, 441
BaeGI GKGCMC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 3 cut(s) 12, 671, 700
BbvI GCAGC 1 cut(s) 391
BccI CCATC 3 cut(s) 167, 518, 684
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BciT130I CCWGG 3 cut(s) 115, 584, 720
BcnI CCSGG 1 cut(s) 481
BfaI CTAG 2 cut(s) 5, 219
BfmI CTRYAG 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 198, 405, 757
BlsI GCNGC 3 cut(s) 199, 406, 758
Bme1390I CCNGG 4 cut(s) 115, 481, 584, 720
BmeRI GACNNNNNGTC 1 cut(s) 533
BmgBI CACGTC 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 579, 580
BmiI GGNNCC 2 cut(s) 31, 581
BmrFI CCNGG 4 cut(s) 115, 481, 584, 720
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 2 cut(s) 189, 623
BmuI ACTGGG 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 324
Bpu14I TTCGAA 2 cut(s) 140, 441
BpuMI CCSGG 1 cut(s) 481
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 747
BsaJI CCNNGG 5 cut(s) 113, 294, 505, 582, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 266, 324
Bse3DI GCAATG 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 3 cut(s) 115, 584, 720
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 5 cut(s) 113, 294, 505, 582, 583
BseGI GGATG 4 cut(s) 59, 385, 529, 695
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 266, 324
BseRI GAGGAG 2 cut(s) 222, 231
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 756
BshFI GGCC 5 cut(s) 15, 41, 212, 581, 627
BshVI ATCGAT 1 cut(s) 183
BsiHKAI GWGCWC 3 cut(s) 12, 671, 700
BsiSI CCGG 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 299
BsnI GGCC 5 cut(s) 15, 41, 212, 581, 627
Bsp119I TTCGAA 2 cut(s) 140, 441
Bsp120I GGGCCC 1 cut(s) 579
Bsp1286I GDGCHC 4 cut(s) 12, 583, 671, 700
BspACI CCGC 5 cut(s) 27, 106, 198, 236, 756
BspANI GGCC 5 cut(s) 15, 41, 212, 581, 627
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 756
BspLI GGNNCC 2 cut(s) 31, 581
BspT104I TTCGAA 2 cut(s) 140, 441
BsrDI GCAATG 1 cut(s) 362
BsrI ACTGG 2 cut(s) 266, 324
BssECI CCNNGG 5 cut(s) 113, 294, 505, 582, 583
BssT1I CCWWGG 2 cut(s) 294, 505
Bst2UI CCWGG 3 cut(s) 115, 584, 720
Bst6I CTCTTC 2 cut(s) 101, 731
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBI TTCGAA 2 cut(s) 140, 441
BstC8I GCNNGC 3 cut(s) 162, 369, 625
BstDEI CTNAG 1 cut(s) 570
BstF5I GGATG 4 cut(s) 59, 385, 529, 695
BstFNI CGCG 1 cut(s) 756
BstHHI GCGC 2 cut(s) 459, 756
BstMWI GCNNNNNNNGC 5 cut(s) 38, 128, 368, 560, 620
BstNI CCWGG 3 cut(s) 115, 584, 720
BstSCI CCNGG 4 cut(s) 113, 479, 582, 718
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 583
BstUI CGCG 1 cut(s) 756
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 324
Bsu15I ATCGAT 1 cut(s) 183
BsuRI GGCC 5 cut(s) 15, 41, 212, 581, 627
BsuTUI ATCGAT 1 cut(s) 183
BtrI CACGTC 1 cut(s) 530
BtsCI GGATG 4 cut(s) 59, 385, 529, 695
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 3 cut(s) 162, 369, 625
CaiI CAGNNNCTG 1 cut(s) 48
CfoI GCGC 2 cut(s) 459, 756
Cfr13I GGNCC 2 cut(s) 579, 580
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 797
CviAII CATG 2 cut(s) 425, 576
CviQI GTAC 1 cut(s) 797
DdeI CTNAG 1 cut(s) 570
DriI GACNNNNNGTC 1 cut(s) 533
EaeI YGGCCR 2 cut(s) 13, 39
Eam1104I CTCTTC 2 cut(s) 101, 731
Eam1105I GACNNNNNGTC 1 cut(s) 533
EarI CTCTTC 2 cut(s) 101, 731
EciI GGCGGA 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 294, 505
Eco147I AGGCCT 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 580
EcoRII CCWGG 3 cut(s) 113, 582, 718
EcoT14I CCWWGG 2 cut(s) 294, 505
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 2 cut(s) 294, 505
FaeI CATG 2 cut(s) 428, 579
FaiI YATR 9 cut(s) 290, 426, 516, 577, 608, 640, 650, 708, 748
FatI CATG 2 cut(s) 424, 575
Fnu4HI GCNGC 3 cut(s) 198, 405, 757
FokI GGATG 4 cut(s) 46, 392, 536, 702
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 3 cut(s) 198, 405, 757
FspBI CTAG 2 cut(s) 5, 219
FspI TGCGCA 1 cut(s) 458
GlaI GCGC 2 cut(s) 458, 755
GluI GCNGC 3 cut(s) 198, 405, 757
HaeIII GGCC 5 cut(s) 15, 41, 212, 581, 627
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 54
HhaI GCGC 2 cut(s) 459, 756
Hin1II CATG 2 cut(s) 428, 579
Hin6I GCGC 2 cut(s) 457, 754
HinP1I GCGC 2 cut(s) 457, 754
HinfI GANTC 3 cut(s) 185, 534, 589
HpaII CCGG 1 cut(s) 480
HphI GGTGA 2 cut(s) 216, 734
Hpy166II GTNNAC 1 cut(s) 341
Hpy188III TCNNGA 2 cut(s) 281, 316
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 7 cut(s) 147, 160, 255, 293, 514, 641, 795
HpyCH4IV ACGT 2 cut(s) 398, 529
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 128, 368, 560, 620
HpyF3I CTNAG 1 cut(s) 570
HpySE526I ACGT 2 cut(s) 398, 529
Hsp92II CATG 2 cut(s) 428, 579
HspAI GCGC 2 cut(s) 457, 754
LmnI GCTCC 4 cut(s) 25, 29, 235, 666
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 189, 623
MaeI CTAG 2 cut(s) 5, 219
MaeII ACGT 2 cut(s) 398, 529
MaeIII GTNAC 1 cut(s) 655
MboII GAAGA 5 cut(s) 88, 324, 426, 707, 748
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 4 cut(s) 12, 583, 671, 700
MluCI AATT 6 cut(s) 71, 408, 443, 644, 710, 770
MlyI GAGTC 1 cut(s) 543
MnlI CCTC 6 cut(s) 102, 170, 243, 249, 252, 503
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 4 cut(s) 115, 481, 584, 720
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 3 cut(s) 115, 584, 720
MvnI CGCG 1 cut(s) 756
MwoI GCNNNNNNNGC 5 cut(s) 38, 128, 368, 560, 620
NciI CCSGG 1 cut(s) 481
NlaIII CATG 2 cut(s) 428, 579
NlaIV GGNNCC 2 cut(s) 31, 581
NsbI TGCGCA 1 cut(s) 458
NspV TTCGAA 2 cut(s) 140, 441
PasI CCCWGGG 1 cut(s) 583
PceI AGGCCT 1 cut(s) 212
PfeI GAWTC 2 cut(s) 185, 589
PkrI GCNGC 3 cut(s) 199, 406, 758
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
Psp6I CCWGG 3 cut(s) 113, 582, 718
PspGI CCWGG 3 cut(s) 113, 582, 718
PspN4I GGNNCC 2 cut(s) 31, 581
PspOMI GGGCCC 1 cut(s) 579
PspPI GGNCC 2 cut(s) 579, 580
PstNI CAGNNNCTG 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 798
RsaNI GTAC 1 cut(s) 797
SatI GCNGC 3 cut(s) 198, 405, 757
Sau96I GGNCC 2 cut(s) 579, 580
SchI GAGTC 1 cut(s) 543
ScrFI CCNGG 4 cut(s) 115, 481, 584, 720
SduI GDGCHC 4 cut(s) 12, 583, 671, 700
SfaNI GCATC 2 cut(s) 189, 623
SfcI CTRYAG 1 cut(s) 564
SfuI TTCGAA 2 cut(s) 140, 441
Sse9I AATT 6 cut(s) 71, 408, 443, 644, 710, 770
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 5 cut(s) 27, 106, 198, 236, 756
SspMI CTAG 2 cut(s) 5, 219
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 4 cut(s) 113, 479, 582, 718
StyI CCWWGG 2 cut(s) 294, 505
TaiI ACGT 2 cut(s) 401, 532
TaqI TCGA 6 cut(s) 140, 183, 188, 315, 355, 441
TasI AATT 6 cut(s) 71, 408, 443, 644, 710, 770
TauI GCSGC 2 cut(s) 200, 759
TfiI GAWTC 2 cut(s) 185, 589
TscAI CASTG 1 cut(s) 676
TseI GCWGC 1 cut(s) 404
TspRI CASTG 1 cut(s) 676
XapI RAATTY 4 cut(s) 71, 443, 644, 710
XspI CTAG 2 cut(s) 5, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.