FvH4_2g32650

Protein of unknown function (DUF3054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011949
Physical Location & Seq
Reverse (-)
24692381 .. 24694492
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32650.t1

Sequence Viewer

Length: 795 bp
ATGCTAATTCTGAGCCAAGCTCCCGCCGGAGCCTTATCGGCCACCTGTTCCCGCAAGCCCCCTCTCAAATTCACCAACCCGAACCCGCCAATCTTCTCGACCCGAAAACCTAAATTCGTTTCCACACCCAACTCCTCCAAGTCCCTCACCCTCGCTAAAGCCGTCGACGATTCCACCTCCGCCGCCGTCAATTCCAAACCGCCCCTCTCCACCGCCGCCAATCCTCCGCCGTTGAACAATGACGACCAGCCCGTCTTCGTCGGCGGCGAGAATATGCCCCTGGAAGGCGTCATTCAGTTCGACAGGCCCAGCTCATCTGCTCGTATCAGAAAATGGGGTAAGGTGGGATTGCTCGCCGGCGGGGATGTTCTGGCTTTGCTGACGTTTGCTGCTATTGGGAGATTCAGTCATGGCTTCCCTGTTTTCGACTTCGAAACCCTACGCACGGCTGACCCTTTTATTGCTGGTTGGTTTTTGAGTGCTTATTTCCTCGGCGGGTTTGGGGAAGACGGACGGGGAACCAATGGTCTGTCCAAGGCTGTCGTTGCTTCTGCTAAGTCATGGGCCCTTGGAATCCCGCTTGGGATAGGCATAAGGGCATACACAGCAGGTCACATTCCCTCCCTCAGCTTTGTGTTGGTATCGATGGGGAGCACTGCTGTTCTTCTTTTGGGATGGAGGACGTTATTGTATAAATTCCTTCCTGGTGATAAGGACAAGAAGAGTGATGTATATCGCCGCGGTAGCCCGTTTGAATTGTTTGAGTTGCTCACATCTCTAGTACGAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3054

Protein Analysis

265

Amino Acids

28.24

Weight (kDa)

9.95

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3054 PF11255 120 - 229 2.6e-30 Protein of unknown function (DUF3054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44920
fragaria_vesca FvH4_2g32650
malus_domestica MD08G1077300.v1.1 MD15G1064800.v1.1
prunus_persica Prupe.1G418700_v2.0.a1
pyrus_communis pycom08g06420 pycom15g06150
rosa_chinensis RchiOBHm_Chr6g0310081
rosa_laevigata RLG00000010513
rosa_multiflora Rmu_sc0000294.1_g000021 Rmu_sc0038452.1_g000001
rosa_roxburghii Rroxscaffold_7G00158900
rosa_rugosa Rorug06G0377200 Rorug06G0377200
rosa_samantha Rh6AG491100 Rh6BG500500 Rh6CG505400 Rh6DG491400
rosa_wichuraiana Rw6G042730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 599
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 741
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 3 cut(s) 68, 113, 695
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 2 cut(s) 284, 445
AgsI TTSAA 2 cut(s) 235, 755
AjnI CCWGG 2 cut(s) 279, 703
AluBI AGCT 3 cut(s) 20, 312, 630
AluI AGCT 3 cut(s) 20, 312, 630
Alw21I GWGCWC 1 cut(s) 656
AoxI GGCC 3 cut(s) 39, 305, 564
ApaI GGGCCC 1 cut(s) 568
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 3 cut(s) 68, 113, 695
AspS9I GGNCC 3 cut(s) 306, 564, 565
AsuHPI GGTGA 3 cut(s) 64, 139, 719
AsuII TTCGAA 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 568
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 2 cut(s) 247, 513
Bbv12I GWGCWC 1 cut(s) 656
BbvCI CCTCAGC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 376
BccI CCATC 3 cut(s) 640, 669, 783
BceAI ACGGC 4 cut(s) 146, 170, 214, 462
BciT130I CCWGG 2 cut(s) 281, 705
BfaI CTAG 1 cut(s) 779
BfuAI ACCTGC 1 cut(s) 599
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 5 cut(s) 183, 216, 265, 390, 739
BlsI GCNGC 5 cut(s) 184, 217, 266, 391, 740
Bme1390I CCNGG 2 cut(s) 281, 705
BmgT120I GGNCC 3 cut(s) 306, 564, 565
BmiI GGNNCC 3 cut(s) 31, 520, 566
BmrFI CCNGG 2 cut(s) 281, 705
BpiI GAAGAC 2 cut(s) 247, 513
BplI GAGNNNNNCTC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 626
Bpu14I TTCGAA 1 cut(s) 432
Bsa29I ATCGAT 1 cut(s) 644
BsaBI GATNNNNATC 1 cut(s) 732
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 5 cut(s) 279, 490, 534, 568, 739
BsaXI ACNNNNNCTCC 4 cut(s) 391, 421, 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 445
Bse118I RCCGGY 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 2 cut(s) 281, 705
BseCI ATCGAT 1 cut(s) 644
BseDI CCNNGG 5 cut(s) 279, 490, 534, 568, 739
BseGI GGATG 2 cut(s) 370, 680
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 2 cut(s) 284, 445
BseMII CTCAG 1 cut(s) 640
BseRI GAGGAG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 1 cut(s) 376
BseYI CCCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 3 cut(s) 41, 307, 566
BshVI ATCGAT 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 2 cut(s) 27, 357
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 284, 445
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 41, 307, 566
Bsp119I TTCGAA 1 cut(s) 432
Bsp120I GGGCCC 1 cut(s) 564
Bsp1286I GDGCHC 2 cut(s) 568, 656
BspANI GGCC 3 cut(s) 41, 307, 566
BspCNI CTCAG 1 cut(s) 639
BspDI ATCGAT 1 cut(s) 644
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 3 cut(s) 31, 520, 566
BspMI ACCTGC 1 cut(s) 599
BspT104I TTCGAA 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 5 cut(s) 279, 490, 534, 568, 739
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 534, 568
Bst2UI CCWGG 2 cut(s) 281, 705
Bst6I CTCTTC 1 cut(s) 716
BstACI GRCGYC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 3 cut(s) 56, 354, 358
BstDEI CTNAG 3 cut(s) 11, 555, 626
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 2 cut(s) 370, 680
BstFNI CGCG 1 cut(s) 741
BstMWI GCNNNNNNNGC 4 cut(s) 38, 545, 605, 744
BstNI CCWGG 2 cut(s) 281, 705
BstSCI CCNGG 2 cut(s) 279, 703
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 2 cut(s) 247, 513
Bsu15I ATCGAT 1 cut(s) 644
BsuRI GGCC 3 cut(s) 41, 307, 566
BsuTUI ATCGAT 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 2 cut(s) 370, 680
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 3 cut(s) 56, 354, 358
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 306, 564, 565
Cfr42I CCGCGG 1 cut(s) 742
ClaI ATCGAT 1 cut(s) 644
CseI GACGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 782
CviAII CATG 2 cut(s) 410, 561
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 3 cut(s) 11, 555, 626
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
EciI GGCGGA 2 cut(s) 169, 216
Eco130I CCWWGG 2 cut(s) 534, 568
Eco24I GRGCYC 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 279, 703
EcoT14I CCWWGG 2 cut(s) 534, 568
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 534, 568
FaeI CATG 2 cut(s) 413, 564
FaiI YATR 7 cut(s) 275, 411, 562, 593, 601, 693, 733
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 409, 560
FauI CCCGC 6 cut(s) 31, 59, 93, 353, 488, 585
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 5 cut(s) 183, 216, 265, 390, 739
FokI GGATG 2 cut(s) 377, 687
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 5 cut(s) 183, 216, 265, 390, 739
FspBI CTAG 1 cut(s) 779
GluI GCNGC 5 cut(s) 183, 216, 265, 390, 739
GsaI CCCAGC 1 cut(s) 312
HaeIII GGCC 3 cut(s) 41, 307, 566
HapII CCGG 2 cut(s) 27, 357
HgaI GACGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 2 cut(s) 413, 564
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 3 cut(s) 170, 402, 573
HpaII CCGG 2 cut(s) 27, 357
HphI GGTGA 3 cut(s) 64, 139, 719
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 12, 329
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 3 cut(s) 167, 170, 263
HpyAV CCTTC 2 cut(s) 278, 710
HpyCH4IV ACGT 2 cut(s) 383, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 545, 605, 744
HpyF3I CTNAG 3 cut(s) 11, 555, 626
HpySE526I ACGT 2 cut(s) 383, 683
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 2 cut(s) 413, 564
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
KspI CCGCGG 1 cut(s) 742
LmnI GCTCC 3 cut(s) 25, 29, 651
Lsp1109I GCAGC 1 cut(s) 376
MaeI CTAG 1 cut(s) 779
MaeII ACGT 2 cut(s) 383, 683
MaeIII GTNAC 1 cut(s) 611
MboII GAAGA 5 cut(s) 85, 247, 518, 656, 733
MhlI GDGCHC 2 cut(s) 568, 656
MluCI AATT 6 cut(s) 6, 68, 113, 190, 695, 755
MreI CGCCGGCG 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 741
MspI CCGG 2 cut(s) 27, 357
MspR9I CCNGG 2 cut(s) 281, 705
MvaI CCWGG 2 cut(s) 281, 705
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 4 cut(s) 38, 545, 605, 744
NaeI GCCGGC 1 cut(s) 358
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 413, 564
NlaIV GGNNCC 3 cut(s) 31, 520, 566
NmeAIII GCCGAG 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 611
NspV TTCGAA 1 cut(s) 432
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 249, 264
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 3 cut(s) 170, 402, 573
PkrI GCNGC 5 cut(s) 184, 217, 266, 391, 740
Psp6I CCWGG 2 cut(s) 279, 703
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 2 cut(s) 279, 703
PspN4I GGNNCC 3 cut(s) 31, 520, 566
PspOMI GGGCCC 1 cut(s) 564
PspPI GGNCC 3 cut(s) 306, 564, 565
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
SacII CCGCGG 1 cut(s) 742
SalI GTCGAC 1 cut(s) 164
SatI GCNGC 5 cut(s) 183, 216, 265, 390, 739
Sau96I GGNCC 3 cut(s) 306, 564, 565
ScrFI CCNGG 2 cut(s) 281, 705
SduI GDGCHC 2 cut(s) 568, 656
Sfr303I CCGCGG 1 cut(s) 742
SfuI TTCGAA 1 cut(s) 432
SgrAI CRCCGGYG 1 cut(s) 356
SgrBI CCGCGG 1 cut(s) 742
SgrDI CGTCGACG 1 cut(s) 164
Sse9I AATT 6 cut(s) 6, 68, 113, 190, 695, 755
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 2 cut(s) 279, 703
StyI CCWWGG 2 cut(s) 534, 568
TaiI ACGT 2 cut(s) 386, 686
TaqI TCGA 6 cut(s) 98, 165, 300, 426, 432, 644
TasI AATT 6 cut(s) 6, 68, 113, 190, 695, 755
TauI GCSGC 4 cut(s) 185, 218, 267, 741
TfiI GAWTC 3 cut(s) 170, 402, 573
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 611
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 1 cut(s) 661
XapI RAATTY 3 cut(s) 68, 113, 695
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.