Rh6CG505400

Protein of unknown function (DUF3054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011949
Physical Location & Seq
Forward (+)
66702421 .. 66705979
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG505400.1

Sequence Viewer

Length: 627 bp
ATGCTAATTCTGAGCCAAGCTCCCACCGGAGCCTTATCGGCCAGCTGTTCTCGCAAGCCCCCTCTCAAATTCACCAACCCGAACCCGCCGATCTTCTCGACCCGAAAACCCAAATTCCTTTCCAGACCCAAGCCGTCCAAGTCCCTCAACCTCACGCTCGCTAAAGCCGTCGACGGAGGAGGAGGCGTCGATTCCACCTCCTTCAAGCCGCTCCCCAATCCTCCTCCGTCGCCGTTAGACAATGACCAGCCCGTCTTCGTCGGCGGCGAGAATATGCCCTTGGAAGGCGTCATTCAGTTCGACAAGCCCAGGCCCAGCTCCTCTGCTCGAATCAGAAAATGGGGTAAGGTGGCACTGCTCGCCGGCGGGGATGTTCTGGCTTTGCTGACGTTCGCTGCAATTGGGAGATTCAGTCATGGCTTCCCTGTTTTGGACTTTGAAACCCTCCGCACCGCTGACCCTTTTATTGCCGGTTGGTTTTTGAGTGCTTATTTCCTCGGAGGCTTTGGGGAAGACGGACGTGGAATCAATGGTCTGCCTAAGGCTGTTACTGCTTCTGCTAAGTCATGGGCCCTCGGAATCCCAGTATGTTTAAACATTTTGTATCCTATAGTTTCTTCGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3054

Protein Analysis

208

Amino Acids

21.99

Weight (kDa)

9.85

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3054 PF11255 122 - 200 3.3e-16 Protein of unknown function (DUF3054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44920
fragaria_vesca FvH4_2g32650
malus_domestica MD08G1077300.v1.1 MD15G1064800.v1.1
prunus_persica Prupe.1G418700_v2.0.a1
pyrus_communis pycom08g06420 pycom15g06150
rosa_chinensis RchiOBHm_Chr6g0310081
rosa_laevigata RLG00000010513
rosa_multiflora Rmu_sc0000294.1_g000021 Rmu_sc0038452.1_g000001
rosa_roxburghii Rroxscaffold_7G00158900
rosa_rugosa Rorug06G0377200 Rorug06G0377200
rosa_samantha Rh6AG491100 Rh6BG500500 Rh6CG505400 Rh6DG491400
rosa_wichuraiana Rw6G042730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccBSI CCGCTC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 171
AciI CCGC 6 cut(s) 86, 209, 264, 366, 448, 453
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 68, 113
AcyI GRCGYC 2 cut(s) 186, 288
AfiI CCNNNNNNNGG 2 cut(s) 284, 430
AgsI TTSAA 2 cut(s) 205, 440
AjiI CACGTC 1 cut(s) 521
AjnI CCWGG 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 3 cut(s) 20, 45, 318
AluI AGCT 3 cut(s) 20, 45, 318
AoxI GGCC 3 cut(s) 39, 311, 570
ApaI GGGCCC 1 cut(s) 574
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 68, 113
AspS9I GGNCC 3 cut(s) 312, 570, 571
AsuHPI GGTGA 1 cut(s) 64
AxyI CCTNAGG 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 574
BanII GRGCYC 1 cut(s) 574
BbsI GAAGAC 2 cut(s) 247, 519
BbvI GCAGC 1 cut(s) 382
BceAI ACGGC 3 cut(s) 118, 152, 217
BciT130I CCWGG 1 cut(s) 310
BciVI GTATCC 1 cut(s) 615
BfmI CTRYAG 1 cut(s) 609
BfuI GTATCC 1 cut(s) 615
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 209, 265, 396
BlsI GCNGC 3 cut(s) 210, 266, 397
Bme1390I CCNGG 1 cut(s) 310
BmgBI CACGTC 1 cut(s) 521
BmgT120I GGNCC 3 cut(s) 312, 570, 571
BmiI GGNNCC 2 cut(s) 31, 572
BmrFI CCNGG 1 cut(s) 310
BmrI ACTGGG 1 cut(s) 578
BmuI ACTGGG 1 cut(s) 578
BpiI GAAGAC 2 cut(s) 247, 519
BplI GAGNNNNNCTC 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 186, 288
BsaJI CCNNGG 4 cut(s) 279, 308, 496, 574
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 4 cut(s) 171, 201, 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 430
Bse118I RCCGGY 2 cut(s) 362, 470
Bse1I ACTGG 1 cut(s) 584
Bse21I CCTNAGG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 4 cut(s) 279, 308, 496, 574
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 284, 430
BseNI ACTGG 1 cut(s) 584
BseRI GAGGAG 4 cut(s) 192, 195, 213, 310
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 314
BshFI GGCC 3 cut(s) 41, 313, 572
BsiSI CCGG 3 cut(s) 27, 363, 471
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 284, 430
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 41, 313, 572
Bsp120I GGGCCC 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 6 cut(s) 86, 209, 264, 366, 448, 453
BspANI GGCC 3 cut(s) 41, 313, 572
BspLI GGNNCC 2 cut(s) 31, 572
BsrBI CCGCTC 1 cut(s) 211
BsrFI RCCGGY 2 cut(s) 362, 470
BsrI ACTGG 1 cut(s) 584
BssAI RCCGGY 2 cut(s) 362, 470
BssECI CCNNGG 4 cut(s) 279, 308, 496, 574
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 2 cut(s) 186, 288
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 310
BstACI GRCGYC 2 cut(s) 186, 288
BstC8I GCNNGC 5 cut(s) 43, 56, 159, 360, 364
BstDEI CTNAG 3 cut(s) 11, 540, 561
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 38, 51, 359, 551
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 1 cut(s) 574
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 2 cut(s) 247, 519
Bsu36I CCTNAGG 1 cut(s) 540
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 3 cut(s) 41, 313, 572
BtrI CACGTC 1 cut(s) 521
BtsCI GGATG 1 cut(s) 376
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 5 cut(s) 43, 56, 159, 360, 364
Cfr10I RCCGGY 2 cut(s) 362, 470
Cfr13I GGNCC 3 cut(s) 312, 570, 571
CseI GACGC 2 cut(s) 175, 277
CviAII CATG 2 cut(s) 416, 567
DdeI CTNAG 3 cut(s) 11, 540, 561
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DraI TTTAAA 1 cut(s) 594
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 540
EcoO109I RGGNCCY 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 419, 570
FaiI YATR 5 cut(s) 275, 417, 568, 589, 611
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 415, 566
FauI CCCGC 2 cut(s) 93, 359
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 209, 265, 396
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 3 cut(s) 209, 265, 396
GluI GCNGC 3 cut(s) 209, 265, 396
GsaI CCCAGC 1 cut(s) 318
HaeIII GGCC 3 cut(s) 41, 313, 572
HapII CCGG 3 cut(s) 27, 363, 471
HgaI GACGC 2 cut(s) 175, 277
Hin1I GRCGYC 2 cut(s) 186, 288
Hin1II CATG 2 cut(s) 419, 570
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 5 cut(s) 191, 330, 408, 525, 579
HpaII CCGG 3 cut(s) 27, 363, 471
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 4 cut(s) 12, 335, 500, 578
Hpy188III TCNNGA 2 cut(s) 97, 123
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 5 cut(s) 173, 176, 191, 232, 263
HpyAV CCTTC 2 cut(s) 211, 278
HpyCH4IV ACGT 2 cut(s) 389, 520
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 51, 359, 551
HpyF3I CTNAG 3 cut(s) 11, 540, 561
HpySE526I ACGT 2 cut(s) 389, 520
Hsp92I GRCGYC 2 cut(s) 186, 288
Hsp92II CATG 2 cut(s) 419, 570
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 4 cut(s) 25, 29, 216, 323
Lsp1109I GCAGC 1 cut(s) 382
MaeII ACGT 2 cut(s) 389, 520
MaeIII GTNAC 1 cut(s) 547
MalI GATC 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 211
MboI GATC 1 cut(s) 90
MboII GAAGA 4 cut(s) 85, 247, 524, 609
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 4 cut(s) 6, 68, 113, 399
MreI CGCCGGCG 1 cut(s) 362
MroNI GCCGGC 1 cut(s) 362
MseI TTAA 1 cut(s) 593
MspA1I CMGCKG 2 cut(s) 45, 455
MspI CCGG 3 cut(s) 27, 363, 471
MspR9I CCNGG 1 cut(s) 310
MssI GTTTAAAC 1 cut(s) 594
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 4 cut(s) 38, 51, 359, 551
NaeI GCCGGC 1 cut(s) 364
NdeII GATC 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 362
NlaIII CATG 2 cut(s) 419, 570
NlaIV GGNNCC 2 cut(s) 31, 572
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 264
PdiI GCCGGC 1 cut(s) 364
PfeI GAWTC 5 cut(s) 191, 330, 408, 525, 579
PkrI GCNGC 3 cut(s) 210, 266, 397
PmeI GTTTAAAC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 308
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 31, 572
PspOMI GGGCCC 1 cut(s) 570
PspPI GGNCC 3 cut(s) 312, 570, 571
PvuII CAGCTG 1 cut(s) 45
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 593
SatI GCNGC 3 cut(s) 209, 265, 396
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 3 cut(s) 312, 570, 571
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 1 cut(s) 574
SetI ASST 8 cut(s) 22, 47, 153, 200, 320, 351, 392, 523
SfcI CTRYAG 1 cut(s) 609
SgrAI CRCCGGYG 1 cut(s) 362
SgrDI CGTCGACG 1 cut(s) 170
Sse9I AATT 4 cut(s) 6, 68, 113, 399
SsiI CCGC 6 cut(s) 86, 209, 264, 366, 448, 453
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 279
TaiI ACGT 2 cut(s) 392, 523
TaqI TCGA 5 cut(s) 98, 171, 189, 300, 328
TasI AATT 4 cut(s) 6, 68, 113, 399
TauI GCSGC 2 cut(s) 211, 267
TfiI GAWTC 5 cut(s) 191, 330, 408, 525, 579
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 1 cut(s) 360
TseI GCWGC 1 cut(s) 395
TspGWI ACGGA 3 cut(s) 189, 216, 531
TspRI CASTG 1 cut(s) 360
XapI RAATTY 2 cut(s) 68, 113
XmiI GTMKAC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.