pycom15g06150

Protein of unknown function (DUF3054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011949
Physical Location & Seq
Reverse (-)
3766549 .. 3768325
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g06150.1

Sequence Viewer

Length: 822 bp
ATGAAAATGCTGGTGCTCGGCCAAGCGCCCAGCGGAGCCTTATCAACTCGGCGGTGTTATCTTACATCCCCGCCAAAATTCTCAAACCCAAACCCTCCCCTCTTCTCTTCCCACAGACCCAGCAGATTCTTCTCCATTGTAAACCCTTCAAAATCTCTCAATATCACGCTCGCAAAGGCCGACGGAGGCGTCGATTCGGCTTCCTCCGCTGACAAACAGGGCTTCTCCGCCTCATCAGCTCCTCCTCCTCCTCCTCCGCCTTCTGTCGATAACCAACCAGTTTTCGTGGGTCAGGACAACATTCCTCTAGAAGGCGTGATTCAGTTCGAGAAGCCCGATTCTTCTGCTCGTTTACGCAAATGGGGTCATGTGGCATTGCTTGCTGGAGGGGATGTTTTGGCATTGCTTACGTTTGCTGCAATTGGAAGATTCAGCCATGGATTCCCCGTTTTCGAATTCGAAACACTTCGCACGGCTGACCCTTTCATTGCTGGATGGTTTTTGAGTGCATATTTTCTCGGAGGCTTTGGTGAGGATGGACGTGGAGTCAATGGACAATCCAAGGCACTTACCGCTACGGCTATGTCATGGGCCTTGGGAATTCCACTTGGGATAATCATAAGGGCATCAACAGCTGGCCACATTCCACCAATCAAATTCGTACTTGTAACAATGGGGAGCACTGGTGTTTTACTTGTTGGATGGAGAGCACTTCTGTATAAGTTTCTTCCCGGCGATAAGAGCAAGAAGAGAGATGTATATCGCCGCGGTAGCCCATTTGAATTGTTTGAGTTGCTCACGTCATTAGTACGAAGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3054

Protein Analysis

274

Amino Acids

29.39

Weight (kDa)

10.04

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3054 PF11255 129 - 238 1.4e-29 Protein of unknown function (DUF3054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44920
fragaria_vesca FvH4_2g32650
malus_domestica MD08G1077300.v1.1 MD15G1064800.v1.1
prunus_persica Prupe.1G418700_v2.0.a1
pyrus_communis pycom08g06420 pycom15g06150
rosa_chinensis RchiOBHm_Chr6g0310081
rosa_laevigata RLG00000010513
rosa_multiflora Rmu_sc0000294.1_g000021 Rmu_sc0038452.1_g000001
rosa_roxburghii Rroxscaffold_7G00158900
rosa_rugosa Rorug06G0377200 Rorug06G0377200
rosa_samantha Rh6AG491100 Rh6BG500500 Rh6CG505400 Rh6DG491400
rosa_wichuraiana Rw6G042730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccII CGCG 1 cut(s) 768
AciI CCGC 9 cut(s) 33, 52, 71, 207, 228, 257, 573, 766, 768
AcoI YGGCCR 2 cut(s) 19, 637
AcsI RAATTY 4 cut(s) 77, 455, 600, 656
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 2 cut(s) 663, 810
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 150, 782
AhdI GACNNNNNGTC 1 cut(s) 545
AjiI CACGTC 2 cut(s) 542, 801
AluBI AGCT 2 cut(s) 239, 635
AluI AGCT 2 cut(s) 239, 635
Alw21I GWGCWC 3 cut(s) 18, 683, 712
AoxI GGCC 4 cut(s) 19, 177, 591, 637
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 4 cut(s) 77, 455, 600, 656
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 591
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 1 cut(s) 542
AsuII TTCGAA 2 cut(s) 453, 459
BalI TGGCCA 1 cut(s) 639
Bbv12I GWGCWC 3 cut(s) 18, 683, 712
BbvI GCAGC 1 cut(s) 403
BccI CCATC 3 cut(s) 489, 530, 696
BceAI ACGGC 2 cut(s) 489, 594
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BcnI CCSGG 1 cut(s) 732
BfaI CTAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 29
BisI GCNGC 2 cut(s) 417, 766
BlsI GCNGC 2 cut(s) 418, 767
Bme1390I CCNGG 1 cut(s) 732
BmeRI GACNNNNNGTC 1 cut(s) 545
BmgBI CACGTC 2 cut(s) 542, 801
BmgT120I GGNCC 1 cut(s) 591
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 732
BmsI GCATC 1 cut(s) 635
BpmI CTGGAG 1 cut(s) 405
Bpu14I TTCGAA 2 cut(s) 453, 459
BpuMI CCSGG 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 759
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 436, 561, 594, 766
BsaXI ACNNNNNCTCC 4 cut(s) 378, 408, 670, 700
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 2 cut(s) 278, 688
Bse3DI GCAATG 3 cut(s) 374, 401, 486
Bse8I GATNNNNATC 1 cut(s) 759
BseDI CCNNGG 4 cut(s) 436, 561, 594, 766
BseGI GGATG 5 cut(s) 65, 397, 500, 541, 707
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 3 cut(s) 374, 401, 486
BseNI ACTGG 2 cut(s) 278, 688
BseRI GAGGAG 5 cut(s) 231, 234, 237, 240, 243
BseXI GCAGC 1 cut(s) 403
BseYI CCCAGC 2 cut(s) 29, 119
Bsh1236I CGCG 1 cut(s) 768
BshFI GGCC 4 cut(s) 21, 179, 593, 639
BsiHKAI GWGCWC 3 cut(s) 18, 683, 712
BsiSI CCGG 1 cut(s) 732
BslI CCNNNNNNNGG 1 cut(s) 311
BsnI GGCC 4 cut(s) 21, 179, 593, 639
Bsp119I TTCGAA 2 cut(s) 453, 459
Bsp1286I GDGCHC 3 cut(s) 18, 683, 712
Bsp19I CCATGG 1 cut(s) 436
BspACI CCGC 9 cut(s) 33, 52, 71, 207, 228, 257, 573, 766, 768
BspANI GGCC 4 cut(s) 21, 179, 593, 639
BspFNI CGCG 1 cut(s) 768
BspLI GGNNCC 1 cut(s) 37
BspT104I TTCGAA 2 cut(s) 453, 459
BsrDI GCAATG 3 cut(s) 374, 401, 486
BsrI ACTGG 2 cut(s) 278, 688
BssECI CCNNGG 4 cut(s) 436, 561, 594, 766
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 3 cut(s) 436, 561, 594
Bst6I CTCTTC 3 cut(s) 107, 112, 743
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 380
BstBI TTCGAA 2 cut(s) 453, 459
BstC8I GCNNGC 3 cut(s) 171, 381, 637
BstDSI CCRYGG 2 cut(s) 436, 766
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 5 cut(s) 65, 397, 500, 541, 707
BstFNI CGCG 1 cut(s) 768
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstMWI GCNNNNNNNGC 7 cut(s) 206, 236, 380, 572, 632, 741, 771
BstSCI CCNGG 1 cut(s) 730
BstUI CGCG 1 cut(s) 768
BstV1I GCAGC 1 cut(s) 403
BsuRI GGCC 4 cut(s) 21, 179, 593, 639
BtgI CCRYGG 2 cut(s) 436, 766
BtrI CACGTC 2 cut(s) 542, 801
BtsCI GGATG 5 cut(s) 65, 397, 500, 541, 707
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 3 cut(s) 171, 381, 637
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 591
Cfr42I CCGCGG 1 cut(s) 769
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 662, 809
CviAII CATG 3 cut(s) 368, 437, 588
CviQI GTAC 2 cut(s) 662, 809
DrdI GACNNNNNNGTC 1 cut(s) 188
DriI GACNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 2 cut(s) 19, 637
Eam1104I CTCTTC 3 cut(s) 107, 112, 743
Eam1105I GACNNNNNGTC 1 cut(s) 545
EarI CTCTTC 3 cut(s) 107, 112, 743
EciI GGCGGA 2 cut(s) 217, 246
Eco130I CCWWGG 3 cut(s) 436, 561, 594
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRI GAATTC 2 cut(s) 455, 600
EcoT14I CCWWGG 3 cut(s) 436, 561, 594
ErhI CCWWGG 3 cut(s) 436, 561, 594
FaeI CATG 3 cut(s) 371, 440, 591
FaiI YATR 8 cut(s) 369, 438, 511, 584, 589, 620, 720, 760
FatI CATG 3 cut(s) 367, 436, 587
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 417, 766
FokI GGATG 5 cut(s) 52, 404, 507, 548, 714
Fsp4HI GCNGC 2 cut(s) 417, 766
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 27
GluI GCNGC 2 cut(s) 417, 766
GsaI CCCAGC 2 cut(s) 33, 123
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 4 cut(s) 21, 179, 593, 639
HapII CCGG 1 cut(s) 732
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 371, 440, 591
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 7 cut(s) 126, 194, 319, 338, 429, 441, 546
HpaII CCGG 1 cut(s) 732
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 2 cut(s) 142, 353
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 3 cut(s) 293, 308, 328
Hpy8I GTNNAC 2 cut(s) 142, 353
Hpy99I CGWCG 2 cut(s) 185, 194
HpyAV CCTTC 4 cut(s) 156, 270, 305, 807
HpyCH4IV ACGT 3 cut(s) 410, 541, 800
HpyCH4V TGCA 2 cut(s) 419, 509
HpyF10VI GCNNNNNNNGC 7 cut(s) 206, 236, 380, 572, 632, 741, 771
HpySE526I ACGT 3 cut(s) 410, 541, 800
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 371, 440, 591
HspAI GCGC 1 cut(s) 26
KspI CCGCGG 1 cut(s) 769
LmnI GCTCC 3 cut(s) 35, 244, 678
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 1 cut(s) 635
MaeI CTAG 1 cut(s) 308
MaeII ACGT 3 cut(s) 410, 541, 800
MaeIII GTNAC 1 cut(s) 667
MboII GAAGA 7 cut(s) 94, 99, 121, 333, 438, 719, 760
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 3 cut(s) 18, 683, 712
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 6 cut(s) 77, 420, 455, 600, 656, 782
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 1 cut(s) 555
MmeI TCCRAC 1 cut(s) 679
Mox20I TGGCCA 1 cut(s) 639
MroXI GAANNNNTTC 1 cut(s) 465
MscI TGGCCA 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 4 cut(s) 33, 209, 635, 768
MspI CCGG 1 cut(s) 732
MspR9I CCNGG 1 cut(s) 732
MunI CAATTG 1 cut(s) 420
MvnI CGCG 1 cut(s) 768
MwoI GCNNNNNNNGC 7 cut(s) 206, 236, 380, 572, 632, 741, 771
NciI CCSGG 1 cut(s) 732
NcoI CCATGG 1 cut(s) 436
NlaIII CATG 3 cut(s) 371, 440, 591
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 28
NspV TTCGAA 2 cut(s) 453, 459
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 189, 333
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 6 cut(s) 126, 194, 319, 338, 429, 441
PkrI GCNGC 2 cut(s) 418, 767
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PspFI CCCAGC 2 cut(s) 29, 119
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 591
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 2 cut(s) 663, 810
RsaNI GTAC 2 cut(s) 662, 809
SacII CCGCGG 1 cut(s) 769
SatI GCNGC 2 cut(s) 417, 766
Sau96I GGNCC 1 cut(s) 591
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 1 cut(s) 732
SduI GDGCHC 3 cut(s) 18, 683, 712
SetI ASST 6 cut(s) 241, 413, 544, 637, 803, 818
SfaNI GCATC 1 cut(s) 635
Sfr303I CCGCGG 1 cut(s) 769
SfuI TTCGAA 2 cut(s) 453, 459
SgrBI CCGCGG 1 cut(s) 769
Sse9I AATT 6 cut(s) 77, 420, 455, 600, 656, 782
SsiI CCGC 9 cut(s) 33, 52, 71, 207, 228, 257, 573, 766, 768
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 730
StyI CCWWGG 3 cut(s) 436, 561, 594
TaiI ACGT 3 cut(s) 413, 544, 803
TaqI TCGA 5 cut(s) 192, 267, 327, 453, 459
TasI AATT 6 cut(s) 77, 420, 455, 600, 656, 782
TauI GCSGC 1 cut(s) 768
TfiI GAWTC 6 cut(s) 126, 194, 319, 338, 429, 441
TscAI CASTG 1 cut(s) 688
TseI GCWGC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 17, 475
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 688
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 4 cut(s) 77, 455, 600, 656
XbaI TCTAGA 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.