Rh6AG491100

Protein of unknown function (DUF3054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011949
Physical Location & Seq
Forward (+)
66769027 .. 66770746
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG491100.1

Sequence Viewer

Length: 810 bp
ATGCTAATTCTGAGCCAAGCTCCCACCGGAGCCTTATCGGCCAGCTGTTCTCGCAAGCCCCCTCTCAAATTCACCAACCCGAACCCGCCAATCTTCTCGACCCGAAAACCCAAATTCCTTCCCAGACCCAACCCGTCCAAGTCCCTCAACCTCACGATCGCTAAAGCCGTCGACGGAGGAGGCGTCGATTCCACCTCACCCGCCGCCGCCGTCAAGCCGCTCCCCTCTCCTCCTCCGTCGCCGTTAGACAATGACCAGCCCGTCTTCGTCGGCGGCGAGAATATGCCCTTGGAAGGCGTCATTCAGTTCGACAAGCCCAGGCCCAGCTCCTCTGCTCGAATCAGAAAATGGGGTAAGGTGGCATTGCTCGCCGGCGGGGATGTTCTGGCTTTGCTGACGTTCGCTGCAATTGGGAGATTCAGTCATGGCTTCCCTGTTTTGGACCTTGAAACCCTCCGCACTGCTGACCCTTTTATTGCCGGTTGGTTTTTGAGTGCTTATTTCCTCGGAGGCTTTGGGGAAGACGGACGTGGAATCAATGGTCTGCCTAAGGCTGTTACTGCTTCTGCAAAGTCATGGGCCCTCGGAATCCCACTTGGGATAGTCATAAGGGCATCAACAGCAGGTCACATTCCCTCATTCAGTTTTGTGTTGGTATCAATGGGGAGCACTGCTGTTCTACTTTTGGGATGGAGGACGTTATTGTATAAATTCCTTCCTGGTGATAAGAGCAAAAAGAGTGATGTATATCGCCGTGGTAGCCCGTTTGAGTTGTTTGAGTTGCTCACATCTCTAGTACGAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3054

Protein Analysis

269

Amino Acids

28.69

Weight (kDa)

10.22

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3054 PF11255 125 - 234 5.8e-30 Protein of unknown function (DUF3054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44920
fragaria_vesca FvH4_2g32650
malus_domestica MD08G1077300.v1.1 MD15G1064800.v1.1
prunus_persica Prupe.1G418700_v2.0.a1
pyrus_communis pycom08g06420 pycom15g06150
rosa_chinensis RchiOBHm_Chr6g0310081
rosa_laevigata RLG00000010513
rosa_multiflora Rmu_sc0000294.1_g000021 Rmu_sc0038452.1_g000001
rosa_roxburghii Rroxscaffold_7G00158900
rosa_rugosa Rorug06G0377200 Rorug06G0377200
rosa_samantha Rh6AG491100 Rh6BG500500 Rh6CG505400 Rh6DG491400
rosa_wichuraiana Rw6G042730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 614
AccBSI CCGCTC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 171
AciI CCGC 8 cut(s) 86, 201, 204, 207, 218, 273, 375, 457
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 3 cut(s) 68, 113, 710
AcyI GRCGYC 2 cut(s) 183, 297
AfaI GTAC 1 cut(s) 798
AfiI CCNNNNNNNGG 2 cut(s) 293, 439
AgsI TTSAA 1 cut(s) 449
AjiI CACGTC 1 cut(s) 530
AjnI CCWGG 2 cut(s) 317, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 3 cut(s) 20, 45, 327
AluI AGCT 3 cut(s) 20, 45, 327
Alw21I GWGCWC 1 cut(s) 671
AoxI GGCC 3 cut(s) 39, 320, 579
ApaI GGGCCC 1 cut(s) 583
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 3 cut(s) 68, 113, 710
AspS9I GGNCC 4 cut(s) 321, 442, 579, 580
AsuHPI GGTGA 3 cut(s) 64, 189, 734
AvaII GGWCC 1 cut(s) 442
AxyI CCTNAGG 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 2 cut(s) 256, 528
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 684, 798
BceAI ACGGC 4 cut(s) 152, 194, 226, 738
BciT130I CCWGG 2 cut(s) 319, 720
BfaI CTAG 1 cut(s) 794
BfuAI ACCTGC 1 cut(s) 614
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 5 cut(s) 204, 207, 218, 274, 405
BlsI GCNGC 5 cut(s) 205, 208, 219, 275, 406
Bme1390I CCNGG 2 cut(s) 319, 720
Bme18I GGWCC 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 530
BmgT120I GGNCC 4 cut(s) 321, 442, 579, 580
BmiI GGNNCC 2 cut(s) 31, 581
BmrFI CCNGG 2 cut(s) 319, 720
BmsI GCATC 1 cut(s) 623
BpiI GAAGAC 2 cut(s) 256, 528
BplI GAGNNNNNCTC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 2 cut(s) 183, 297
BsaJI CCNNGG 5 cut(s) 288, 317, 505, 583, 754
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 406, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 439
Bse118I RCCGGY 2 cut(s) 371, 479
Bse21I CCTNAGG 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 2 cut(s) 319, 720
BseDI CCNNGG 5 cut(s) 288, 317, 505, 583, 754
BseGI GGATG 2 cut(s) 385, 695
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 2 cut(s) 293, 439
BseMI GCAATG 1 cut(s) 362
BseRI GAGGAG 4 cut(s) 192, 219, 222, 319
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 323
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 41, 322, 581
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 3 cut(s) 27, 372, 480
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 293, 439
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 41, 322, 581
Bsp120I GGGCCC 1 cut(s) 579
Bsp1286I GDGCHC 2 cut(s) 583, 671
Bsp143I GATC 1 cut(s) 156
BspACI CCGC 8 cut(s) 86, 201, 204, 207, 218, 273, 375, 457
BspANI GGCC 3 cut(s) 41, 322, 581
BspLI GGNNCC 2 cut(s) 31, 581
BspMI ACCTGC 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 362
BsrFI RCCGGY 2 cut(s) 371, 479
BssAI RCCGGY 2 cut(s) 371, 479
BssECI CCNNGG 5 cut(s) 288, 317, 505, 583, 754
BssMI GATC 1 cut(s) 156
BssNI GRCGYC 2 cut(s) 183, 297
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 319, 720
BstACI GRCGYC 2 cut(s) 183, 297
BstC8I GCNNGC 4 cut(s) 43, 56, 369, 373
BstDEI CTNAG 2 cut(s) 11, 549
BstDSI CCRYGG 1 cut(s) 754
BstF5I GGATG 2 cut(s) 385, 695
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 6 cut(s) 38, 51, 368, 560, 620, 759
BstNI CCWGG 2 cut(s) 319, 720
BstSCI CCNGG 2 cut(s) 317, 718
BstSLI GKGCMC 1 cut(s) 583
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 2 cut(s) 256, 528
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 3 cut(s) 41, 322, 581
BtgI CCRYGG 1 cut(s) 754
BtrI CACGTC 1 cut(s) 530
BtsCI GGATG 2 cut(s) 385, 695
BtsI GCAGTG 2 cut(s) 459, 669
BtsIMutI CAGTG 2 cut(s) 459, 669
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 4 cut(s) 43, 56, 369, 373
Cfr10I RCCGGY 2 cut(s) 371, 479
Cfr13I GGNCC 4 cut(s) 321, 442, 579, 580
CseI GACGC 2 cut(s) 172, 286
Csp6I GTAC 1 cut(s) 797
CviAII CATG 2 cut(s) 425, 576
CviQI GTAC 1 cut(s) 797
DdeI CTNAG 2 cut(s) 11, 549
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 442
Eco81I CCTNAGG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 580
EcoRII CCWGG 2 cut(s) 317, 718
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 428, 579
FaiI YATR 6 cut(s) 284, 426, 577, 608, 708, 748
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 424, 575
FauI CCCGC 3 cut(s) 93, 208, 368
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 5 cut(s) 204, 207, 218, 274, 405
FokI GGATG 2 cut(s) 392, 702
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 5 cut(s) 204, 207, 218, 274, 405
FspBI CTAG 1 cut(s) 794
GluI GCNGC 5 cut(s) 204, 207, 218, 274, 405
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 3 cut(s) 41, 322, 581
HapII CCGG 3 cut(s) 27, 372, 480
HgaI GACGC 2 cut(s) 172, 286
Hin1I GRCGYC 2 cut(s) 183, 297
Hin1II CATG 2 cut(s) 428, 579
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 5 cut(s) 188, 339, 417, 534, 588
HpaII CCGG 3 cut(s) 27, 372, 480
HphI GGTGA 3 cut(s) 64, 189, 734
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 4 cut(s) 12, 344, 509, 587
Hpy188III TCNNGA 2 cut(s) 97, 154
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 5 cut(s) 173, 176, 188, 241, 272
HpyAV CCTTC 3 cut(s) 128, 287, 725
HpyCH4IV ACGT 3 cut(s) 398, 529, 698
HpyCH4V TGCA 2 cut(s) 407, 569
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 51, 368, 560, 620, 759
HpyF3I CTNAG 2 cut(s) 11, 549
HpySE526I ACGT 3 cut(s) 398, 529, 698
Hsp92I GRCGYC 2 cut(s) 183, 297
Hsp92II CATG 2 cut(s) 428, 579
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 5 cut(s) 25, 29, 225, 332, 666
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 623
MaeI CTAG 1 cut(s) 794
MaeII ACGT 3 cut(s) 398, 529, 698
MaeIII GTNAC 2 cut(s) 556, 626
MalI GATC 1 cut(s) 158
MbiI CCGCTC 1 cut(s) 220
MboI GATC 1 cut(s) 156
MboII GAAGA 3 cut(s) 85, 256, 533
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 583, 671
MluCI AATT 5 cut(s) 6, 68, 113, 408, 710
MreI CGCCGGCG 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 27, 372, 480
MspR9I CCNGG 2 cut(s) 319, 720
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 2 cut(s) 319, 720
MwoI GCNNNNNNNGC 6 cut(s) 38, 51, 368, 560, 620, 759
NaeI GCCGGC 1 cut(s) 373
NdeII GATC 1 cut(s) 156
NgoMIV GCCGGC 1 cut(s) 371
NlaIII CATG 2 cut(s) 428, 579
NlaIV GGNNCC 2 cut(s) 31, 581
NmuCI GTSAC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 3 cut(s) 165, 180, 273
PdiI GCCGGC 1 cut(s) 373
PfeI GAWTC 5 cut(s) 188, 339, 417, 534, 588
PkrI GCNGC 5 cut(s) 205, 208, 219, 275, 406
Ple19I CGATCG 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 317, 718
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 2 cut(s) 317, 718
PspN4I GGNNCC 2 cut(s) 31, 581
PspOMI GGGCCC 1 cut(s) 579
PspPI GGNCC 4 cut(s) 321, 442, 579, 580
PvuI CGATCG 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 1 cut(s) 798
RsaNI GTAC 1 cut(s) 797
SalI GTCGAC 1 cut(s) 170
SatI GCNGC 5 cut(s) 204, 207, 218, 274, 405
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 4 cut(s) 321, 442, 579, 580
ScrFI CCNGG 2 cut(s) 319, 720
SduI GDGCHC 2 cut(s) 583, 671
SfaNI GCATC 1 cut(s) 623
SgrAI CRCCGGYG 1 cut(s) 371
SgrDI CGTCGACG 1 cut(s) 170
SinI GGWCC 1 cut(s) 442
Sse9I AATT 5 cut(s) 6, 68, 113, 408, 710
SsiI CCGC 8 cut(s) 86, 201, 204, 207, 218, 273, 375, 457
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 2 cut(s) 317, 718
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 3 cut(s) 401, 532, 701
TaqI TCGA 5 cut(s) 98, 171, 186, 309, 337
TasI AATT 5 cut(s) 6, 68, 113, 408, 710
TauI GCSGC 4 cut(s) 206, 209, 220, 276
TfiI GAWTC 5 cut(s) 188, 339, 417, 534, 588
TscAI CASTG 2 cut(s) 466, 676
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 626
TspGWI ACGGA 3 cut(s) 189, 225, 540
TspRI CASTG 2 cut(s) 466, 676
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 3 cut(s) 68, 113, 710
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.