Rh6BG500500

Protein of unknown function (DUF3054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011949
Physical Location & Seq
Forward (+)
70021997 .. 70030215
8219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG500500.1

Sequence Viewer

Length: 807 bp
ATGCTAATTCTGAGCCAAGCTCCCACCGGAGCCTTATCGGCCAGCTGTTCTCGCAAGCCCCCTCTCAAATTCACCAACCCGAACCCGCCGATCTTCTCGACCCGAAAACCCAAATTCCTTTCCAGACCCAAGCCGTCCAAGTCCCTCAACCTCACGCTCGCTAAAGCCGTCGACGGAGGAGGAGGAGGAGGAGGCGTCGATTCCGCCTTCAAGCCGCTCCCCAATCCTCCTCCGTCGCCGTTAGACAATGACCAGCCCGTCTTCGTCGGCGGCGAGAATATGCCCTTGGAAGGCGTCATTCAGTTCGACAAGCCCAGGCCCAGCTCCTCTGCTCGAATCAGAAAATGGGGTAAGGTGGCATTGCTCGCCGGCGGGGATGTTCTGGCTTTGCTGACGTTCGCTGCAATTGGGAGATTCAGTCATGGCTTCCCTGTTTTGGACTTTGAAACCCTCCGCACCGCTGACCCTTTTATTGCCGGTTGGTTTTTGAGTGCTTATTTCCTCGGAGGCTTTGGGGAAGACGGACGTGGAATCAATGGTCTGCCTAAGGCTGTTACTGCTTCTGCTAAGTCATGGGCCCTCGGAATCCCACTTGGGATAGTCATAAGGGCATCAACAGCAGGTCACATTCCCTCCTTCAGTTTTGTGTTGGTATCAATGGGGAGCACTGCTGTTCTACTTTTGGGATGGAGGACGTTATTGTATAAATTCCTTCCTGGTGATAAGAGCAAAAAGAGTGATGTATATCGCCGCGGTAGCCCGTTTGAGTTGTTTGAGTTGCTCACATCTCTAGTACGAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3054

Protein Analysis

268

Amino Acids

28.61

Weight (kDa)

10.25

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3054 PF11255 124 - 233 7.6e-30 Protein of unknown function (DUF3054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44920
fragaria_vesca FvH4_2g32650
malus_domestica MD08G1077300.v1.1 MD15G1064800.v1.1
prunus_persica Prupe.1G418700_v2.0.a1
pyrus_communis pycom08g06420 pycom15g06150
rosa_chinensis RchiOBHm_Chr6g0310081
rosa_laevigata RLG00000010513
rosa_multiflora Rmu_sc0000294.1_g000021 Rmu_sc0038452.1_g000001
rosa_roxburghii Rroxscaffold_7G00158900
rosa_rugosa Rorug06G0377200 Rorug06G0377200
rosa_samantha Rh6AG491100 Rh6BG500500 Rh6CG505400 Rh6DG491400
rosa_wichuraiana Rw6G042730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 611
AccBSI CCGCTC 1 cut(s) 217
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 753
AciI CCGC 9 cut(s) 86, 204, 215, 270, 372, 454, 459, 751, 753
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 3 cut(s) 68, 113, 707
AcuI CTGAAG 1 cut(s) 622
AcyI GRCGYC 2 cut(s) 195, 294
AfaI GTAC 1 cut(s) 795
AfiI CCNNNNNNNGG 2 cut(s) 290, 436
AgsI TTSAA 2 cut(s) 211, 446
AjiI CACGTC 1 cut(s) 527
AjnI CCWGG 2 cut(s) 314, 715
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 3 cut(s) 20, 45, 324
AluI AGCT 3 cut(s) 20, 45, 324
Alw21I GWGCWC 1 cut(s) 668
AoxI GGCC 3 cut(s) 39, 317, 576
ApaI GGGCCC 1 cut(s) 580
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 3 cut(s) 68, 113, 707
AspS9I GGNCC 3 cut(s) 318, 576, 577
AsuHPI GGTGA 2 cut(s) 64, 731
AxyI CCTNAGG 1 cut(s) 546
BaeGI GKGCMC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 580
BbsI GAAGAC 2 cut(s) 253, 525
Bbv12I GWGCWC 1 cut(s) 668
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 681, 795
BceAI ACGGC 3 cut(s) 118, 152, 223
BciT130I CCWGG 2 cut(s) 316, 717
BfaI CTAG 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 611
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 4 cut(s) 215, 271, 402, 751
BlsI GCNGC 4 cut(s) 216, 272, 403, 752
Bme1390I CCNGG 2 cut(s) 316, 717
BmgBI CACGTC 1 cut(s) 527
BmgT120I GGNCC 3 cut(s) 318, 576, 577
BmiI GGNNCC 2 cut(s) 31, 578
BmrFI CCNGG 2 cut(s) 316, 717
BmsI GCATC 1 cut(s) 620
BpiI GAAGAC 2 cut(s) 253, 525
BplI GAGNNNNNCTC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 744
BsaHI GRCGYC 2 cut(s) 195, 294
BsaJI CCNNGG 5 cut(s) 285, 314, 502, 580, 751
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 6 cut(s) 180, 210, 403, 433, 617, 647
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 436
Bse118I RCCGGY 2 cut(s) 368, 476
Bse21I CCTNAGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 359
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 2 cut(s) 316, 717
BseDI CCNNGG 5 cut(s) 285, 314, 502, 580, 751
BseGI GGATG 2 cut(s) 382, 692
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 2 cut(s) 290, 436
BseMI GCAATG 1 cut(s) 359
BseRI GAGGAG 7 cut(s) 192, 195, 198, 201, 204, 219, 316
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 753
BshFI GGCC 3 cut(s) 41, 319, 578
BsiHKAI GWGCWC 1 cut(s) 668
BsiSI CCGG 3 cut(s) 27, 369, 477
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 290, 436
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 41, 319, 578
Bsp120I GGGCCC 1 cut(s) 576
Bsp1286I GDGCHC 2 cut(s) 580, 668
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 9 cut(s) 86, 204, 215, 270, 372, 454, 459, 751, 753
BspANI GGCC 3 cut(s) 41, 319, 578
BspFNI CGCG 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 31, 578
BspMI ACCTGC 1 cut(s) 611
BsrBI CCGCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 359
BsrFI RCCGGY 2 cut(s) 368, 476
BssAI RCCGGY 2 cut(s) 368, 476
BssECI CCNNGG 5 cut(s) 285, 314, 502, 580, 751
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 2 cut(s) 195, 294
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 316, 717
BstACI GRCGYC 2 cut(s) 195, 294
BstC8I GCNNGC 5 cut(s) 43, 56, 159, 366, 370
BstDEI CTNAG 3 cut(s) 11, 546, 567
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 2 cut(s) 382, 692
BstFNI CGCG 1 cut(s) 753
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 6 cut(s) 38, 51, 365, 557, 617, 756
BstNI CCWGG 2 cut(s) 316, 717
BstSCI CCNGG 2 cut(s) 314, 715
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 1 cut(s) 753
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 2 cut(s) 253, 525
Bsu36I CCTNAGG 1 cut(s) 546
BsuRI GGCC 3 cut(s) 41, 319, 578
BtgI CCRYGG 1 cut(s) 751
BtrI CACGTC 1 cut(s) 527
BtsCI GGATG 2 cut(s) 382, 692
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 1 cut(s) 666
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 5 cut(s) 43, 56, 159, 366, 370
Cfr10I RCCGGY 2 cut(s) 368, 476
Cfr13I GGNCC 3 cut(s) 318, 576, 577
Cfr42I CCGCGG 1 cut(s) 754
CseI GACGC 2 cut(s) 184, 283
Csp6I GTAC 1 cut(s) 794
CviAII CATG 2 cut(s) 422, 573
CviQI GTAC 1 cut(s) 794
DdeI CTNAG 3 cut(s) 11, 546, 567
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 622
Eco81I CCTNAGG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 314, 715
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 425, 576
FaiI YATR 6 cut(s) 281, 423, 574, 605, 705, 745
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 421, 572
FauI CCCGC 2 cut(s) 93, 365
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 215, 271, 402, 751
FokI GGATG 2 cut(s) 389, 699
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 4 cut(s) 215, 271, 402, 751
FspBI CTAG 1 cut(s) 791
GluI GCNGC 4 cut(s) 215, 271, 402, 751
GsaI CCCAGC 1 cut(s) 324
HaeIII GGCC 3 cut(s) 41, 319, 578
HapII CCGG 3 cut(s) 27, 369, 477
HgaI GACGC 2 cut(s) 184, 283
Hin1I GRCGYC 2 cut(s) 195, 294
Hin1II CATG 2 cut(s) 425, 576
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 5 cut(s) 200, 336, 414, 531, 585
HpaII CCGG 3 cut(s) 27, 369, 477
HphI GGTGA 2 cut(s) 64, 731
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 4 cut(s) 12, 341, 506, 584
Hpy188III TCNNGA 2 cut(s) 97, 123
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 5 cut(s) 173, 176, 200, 238, 269
HpyAV CCTTC 4 cut(s) 217, 284, 646, 722
HpyCH4IV ACGT 3 cut(s) 395, 526, 695
HpyCH4V TGCA 1 cut(s) 404
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 51, 365, 557, 617, 756
HpyF3I CTNAG 3 cut(s) 11, 546, 567
HpySE526I ACGT 3 cut(s) 395, 526, 695
Hsp92I GRCGYC 2 cut(s) 195, 294
Hsp92II CATG 2 cut(s) 425, 576
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
KspI CCGCGG 1 cut(s) 754
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 5 cut(s) 25, 29, 222, 329, 663
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 620
MaeI CTAG 1 cut(s) 791
MaeII ACGT 3 cut(s) 395, 526, 695
MaeIII GTNAC 2 cut(s) 553, 623
MalI GATC 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 217
MboI GATC 1 cut(s) 90
MboII GAAGA 3 cut(s) 85, 253, 530
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 2 cut(s) 580, 668
MluCI AATT 5 cut(s) 6, 68, 113, 405, 707
MreI CGCCGGCG 1 cut(s) 368
MroNI GCCGGC 1 cut(s) 368
MspA1I CMGCKG 3 cut(s) 45, 461, 753
MspI CCGG 3 cut(s) 27, 369, 477
MspR9I CCNGG 2 cut(s) 316, 717
MunI CAATTG 1 cut(s) 405
MvaI CCWGG 2 cut(s) 316, 717
MvnI CGCG 1 cut(s) 753
MwoI GCNNNNNNNGC 6 cut(s) 38, 51, 365, 557, 617, 756
NaeI GCCGGC 1 cut(s) 370
NdeII GATC 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 368
NlaIII CATG 2 cut(s) 425, 576
NlaIV GGNNCC 2 cut(s) 31, 578
NmuCI GTSAC 1 cut(s) 623
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 270
PdiI GCCGGC 1 cut(s) 370
PfeI GAWTC 5 cut(s) 200, 336, 414, 531, 585
PkrI GCNGC 4 cut(s) 216, 272, 403, 752
Psp6I CCWGG 2 cut(s) 314, 715
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 2 cut(s) 314, 715
PspN4I GGNNCC 2 cut(s) 31, 578
PspOMI GGGCCC 1 cut(s) 576
PspPI GGNCC 3 cut(s) 318, 576, 577
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 1 cut(s) 795
RsaNI GTAC 1 cut(s) 794
SacII CCGCGG 1 cut(s) 754
SalI GTCGAC 1 cut(s) 170
SatI GCNGC 4 cut(s) 215, 271, 402, 751
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 3 cut(s) 318, 576, 577
ScrFI CCNGG 2 cut(s) 316, 717
SduI GDGCHC 2 cut(s) 580, 668
SetI ASST 9 cut(s) 22, 47, 153, 326, 357, 398, 529, 625, 698
SfaNI GCATC 1 cut(s) 620
Sfr303I CCGCGG 1 cut(s) 754
SgrAI CRCCGGYG 1 cut(s) 368
SgrBI CCGCGG 1 cut(s) 754
SgrDI CGTCGACG 1 cut(s) 170
Sse9I AATT 5 cut(s) 6, 68, 113, 405, 707
SsiI CCGC 9 cut(s) 86, 204, 215, 270, 372, 454, 459, 751, 753
SspMI CTAG 1 cut(s) 791
StyD4I CCNGG 2 cut(s) 314, 715
StyI CCWWGG 1 cut(s) 285
TaiI ACGT 3 cut(s) 398, 529, 698
TaqI TCGA 5 cut(s) 98, 171, 198, 306, 334
TasI AATT 5 cut(s) 6, 68, 113, 405, 707
TauI GCSGC 3 cut(s) 217, 273, 753
TfiI GAWTC 5 cut(s) 200, 336, 414, 531, 585
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 623
TspGWI ACGGA 3 cut(s) 189, 222, 537
TspRI CASTG 1 cut(s) 673
XapI RAATTY 3 cut(s) 68, 113, 707
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.