Rmu_sc0038452.1_g000001

Protein of unknown function (DUF3054)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038452.1
OG0011949
Physical Location & Seq
Forward (+)
242 .. 817
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038452.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgctaattctgagccaagctcccaccggagccttatcggccagctgttctcgcaagccccctctcaaattcaccaacccgaacccgccaatcttctcgacccgaaaacccaaattccttcccggacccaacccgtccaagtccctcaacctcacgctcgctaaagccgtcgacggaggaggaggaggaggaggaggcgtcgattccacctcacccgccgccgccgtcaagccgctcctctctcctcctccgtcgccgttagacaatgaccagcccgtcttcgtcgccggcgagaatatgcccttggaaggcgtcattcagttcgacaagcccaggcccagctcctctgctcgaatcagaaaatggggtaaggtggcattgctcgccggcggggatgttctggctttgctgaccttcgctgcaattgggagattcagtcatggcttccctgttttggacttcgaaaccctccgcactgctgacccttttattgcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3054

Protein Analysis

165

Amino Acids

17.08

Weight (kDa)

9.84

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44920
fragaria_vesca FvH4_2g32650
malus_domestica MD08G1077300.v1.1 MD15G1064800.v1.1
prunus_persica Prupe.1G418700_v2.0.a1
pyrus_communis pycom08g06420 pycom15g06150
rosa_chinensis RchiOBHm_Chr6g0310081
rosa_laevigata RLG00000010513
rosa_multiflora Rmu_sc0000294.1_g000021 Rmu_sc0038452.1_g000001
rosa_roxburghii Rroxscaffold_7G00158900
rosa_rugosa Rorug06G0377200 Rorug06G0377200
rosa_samantha Rh6AG491100 Rh6BG500500 Rh6CG505400 Rh6DG491400
rosa_wichuraiana Rw6G042730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 235
AccI GTMKAC 1 cut(s) 171
AciI CCGC 7 cut(s) 86, 216, 219, 222, 233, 390, 472
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 68, 113
AcyI GRCGYC 2 cut(s) 198, 312
AfiI CCNNNNNNNGG 2 cut(s) 308, 454
AjnI CCWGG 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 3 cut(s) 20, 45, 342
AluI AGCT 3 cut(s) 20, 45, 342
AoxI GGCC 2 cut(s) 39, 335
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 2 cut(s) 68, 113
AspS9I GGNCC 2 cut(s) 125, 336
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 64, 204
AsuII TTCGAA 1 cut(s) 462
AvaII GGWCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 406
BceAI ACGGC 3 cut(s) 152, 209, 241
BciT130I CCWGG 1 cut(s) 334
BcnI CCSGG 1 cut(s) 123
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 4 cut(s) 219, 222, 233, 420
BlsI GCNGC 4 cut(s) 220, 223, 234, 421
Bme1390I CCNGG 2 cut(s) 123, 334
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 125, 336
BmiI GGNNCC 2 cut(s) 31, 127
BmrFI CCNGG 2 cut(s) 123, 334
BpiI GAAGAC 1 cut(s) 271
BplI GAGNNNNNCTC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 462
BpuMI CCSGG 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 198, 312
BsaJI CCNNGG 2 cut(s) 303, 332
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 454
Bse118I RCCGGY 2 cut(s) 287, 386
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 303, 332
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 2 cut(s) 308, 454
BseMI GCAATG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 406
BseYI CCCAGC 1 cut(s) 338
BshFI GGCC 2 cut(s) 41, 337
BsiSI CCGG 4 cut(s) 27, 123, 288, 387
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 308, 454
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 2 cut(s) 41, 337
Bsp119I TTCGAA 1 cut(s) 462
BspACI CCGC 7 cut(s) 86, 216, 219, 222, 233, 390, 472
BspANI GGCC 2 cut(s) 41, 337
BspLI GGNNCC 2 cut(s) 31, 127
BspT104I TTCGAA 1 cut(s) 462
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 377
BsrFI RCCGGY 2 cut(s) 287, 386
BssAI RCCGGY 2 cut(s) 287, 386
BssECI CCNNGG 2 cut(s) 303, 332
BssNI GRCGYC 2 cut(s) 198, 312
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 334
BstACI GRCGYC 2 cut(s) 198, 312
BstBI TTCGAA 1 cut(s) 462
BstC8I GCNNGC 6 cut(s) 43, 56, 159, 289, 384, 388
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 400
BstMWI GCNNNNNNNGC 3 cut(s) 38, 51, 383
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 121, 332
BstV1I GCAGC 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 271
BsuRI GGCC 2 cut(s) 41, 337
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 6 cut(s) 43, 56, 159, 289, 384, 388
Cfr10I RCCGGY 2 cut(s) 287, 386
Cfr13I GGNCC 2 cut(s) 125, 336
CseI GACGC 2 cut(s) 187, 301
CviAII CATG 1 cut(s) 440
DdeI CTNAG 1 cut(s) 11
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 443
FaiI YATR 2 cut(s) 299, 441
FaqI GGGAC 1 cut(s) 127
FatI CATG 1 cut(s) 439
FauI CCCGC 3 cut(s) 93, 223, 383
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 219, 222, 233, 420
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 4 cut(s) 219, 222, 233, 420
GluI GCNGC 4 cut(s) 219, 222, 233, 420
GsaI CCCAGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 41, 337
HapII CCGG 4 cut(s) 27, 123, 288, 387
HgaI GACGC 2 cut(s) 187, 301
Hin1I GRCGYC 2 cut(s) 198, 312
Hin1II CATG 1 cut(s) 443
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 203, 354, 432
HpaII CCGG 4 cut(s) 27, 123, 288, 387
HphI GGTGA 2 cut(s) 64, 204
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 12, 359
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 5 cut(s) 173, 176, 203, 256, 287
HpyAV CCTTC 3 cut(s) 128, 302, 424
HpyCH4V TGCA 1 cut(s) 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 51, 383
HpyF3I CTNAG 1 cut(s) 11
Hsp92I GRCGYC 2 cut(s) 198, 312
Hsp92II CATG 1 cut(s) 443
KroI GCCGGC 2 cut(s) 287, 386
KroNI GCCGGC 2 cut(s) 289, 388
LmnI GCTCC 4 cut(s) 25, 29, 240, 347
Lsp1109I GCAGC 1 cut(s) 406
MbiI CCGCTC 1 cut(s) 235
MboII GAAGA 2 cut(s) 85, 271
MfeI CAATTG 1 cut(s) 423
MluCI AATT 4 cut(s) 6, 68, 113, 423
MreI CGCCGGCG 2 cut(s) 287, 386
MroNI GCCGGC 2 cut(s) 287, 386
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 4 cut(s) 27, 123, 288, 387
MspR9I CCNGG 2 cut(s) 123, 334
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 3 cut(s) 38, 51, 383
NaeI GCCGGC 2 cut(s) 289, 388
NciI CCSGG 1 cut(s) 123
NgoMIV GCCGGC 2 cut(s) 287, 386
NlaIII CATG 1 cut(s) 443
NlaIV GGNNCC 2 cut(s) 31, 127
NspV TTCGAA 1 cut(s) 462
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 288
PdiI GCCGGC 2 cut(s) 289, 388
PfeI GAWTC 3 cut(s) 203, 354, 432
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 4 cut(s) 220, 223, 234, 421
Psp6I CCWGG 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 31, 127
PspPI GGNCC 2 cut(s) 125, 336
PvuII CAGCTG 1 cut(s) 45
SalI GTCGAC 1 cut(s) 170
SatI GCNGC 4 cut(s) 219, 222, 233, 420
Sau96I GGNCC 2 cut(s) 125, 336
ScrFI CCNGG 2 cut(s) 123, 334
SetI ASST 7 cut(s) 22, 47, 153, 212, 344, 375, 416
SfuI TTCGAA 1 cut(s) 462
SgrAI CRCCGGYG 2 cut(s) 287, 386
SgrDI CGTCGACG 1 cut(s) 170
SinI GGWCC 1 cut(s) 125
Sse9I AATT 4 cut(s) 6, 68, 113, 423
SsiI CCGC 7 cut(s) 86, 216, 219, 222, 233, 390, 472
StyD4I CCNGG 2 cut(s) 121, 332
StyI CCWWGG 1 cut(s) 303
TaqI TCGA 6 cut(s) 98, 171, 201, 324, 352, 462
TasI AATT 4 cut(s) 6, 68, 113, 423
TauI GCSGC 3 cut(s) 221, 224, 235
TfiI GAWTC 3 cut(s) 203, 354, 432
TscAI CASTG 1 cut(s) 481
TseI GCWGC 1 cut(s) 419
TspGWI ACGGA 2 cut(s) 189, 240
TspRI CASTG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 2 cut(s) 68, 113
XmiI GTMKAC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.