Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

17424473 .. 17427475

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGCAGACGTCAAGATTCAATCCGAATCCGAATCCTCGGATTCTCATCCAGTGGTCGACAATCAACCACCTCCTCCGCCTCCGCCGCCGCAACAGCCGGCGAAAGAAGAGGAGAATCAACCAAAAACATCTCCGACTCCGCCGCCACACTGGATGCGGTATCCACCAACGGTGATAATCCCTCATCAGATGATGTACGCGCCGCCGCCGTTCCCACCTTATCATCAGTATCCGAATCACCACCACCTTCACCATCAATCTCGTGGTAATAAGCATCAAAACGCTTTTAATGGTGAGAATAAAACCATATGGGTTGGTGATTTGCATCACTGGATGGATGAGGCTTATCTTAATTCTTCTTTTGCTTCCGGCGACGAGAGAGAGATTGTTTCGGTGAAGGTGATTCGTAATAAGAACAATGGTTTATCAGAAGGATATGGATTTGTGGAGTTTGAGTCCCATGATGTAGCTGATAAGGTTTTGCGGGAGTTTAACGGGACGACTATGCCAAATACTGACCAACCTTTTCGTTTGAACTGGGCTAGTTTTAGCACCGGTGAGAAGCGGTTAGAGAACAATGGACCTGATCTCTCTATTTTCGTGGGGGATTTGTCACCAGATGTTTCGGATAATTTGTTGCACGAGACCTTCTCTGAGAAGTATCCGTCGGTTAAAGCTGCGAAAGTTGTCCTTGATGCTAATACTGGTAGGTCAAAGGGGTATGGGTTTGTGAGGTTTGGTGATGAGAATGAAAGGACCAAAGCAATGACTGAGATGAATGGTGTTAAATGTTCTAGTAGAGCTATGCGCATCGGTCCTGCTACCCCGAGGAAGACTAATGGTTATCAACAACAAGGTGGATACATGCCGAATGGTACCTTGACGCGTCCTGAAGGGGACATAATGAACACAACAATATTTGTTGGAGGGCTTGACTCTAGTGTCACTGATGAAGACTTAAAGCAACCTTTCAATGAATTCGGGGAAATAGTCTCTGTCAAGATTCCTGTTGGTAAAGGATGCGGATTTGTTCAGTTTGTTAACAGACCAAATGCAGAGGAGGCTTTGGAGAAACTAAATGGGACTGTAATTGGAAAACAAACAGTTCGGCTTTCTTGGGGACGTAATCCCGCCAATAAGCAGCCTAGAGATAAGTATGGAAACCAATGGGTTGATCCGTACTATGGAGGACAGTTTTACAATGGGTATGGATACATGGTACCTCAACCTGACCCGAGAATGTATCCCGCTGCACCTTACTATCCAATGTACGGTGGTCATCAGCAACAAGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

432

Amino Acids

48.5

Weight (kDa)

6.11

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	103 - 172	2e-10	RNA recognition motif
RRM_1	PF00076	199 - 269	2e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	941
AatII	GACGTC	1 cut(s)	12
Acc16I	TGCGCA	1 cut(s)	809
Acc65I	GGTACC	2 cut(s)	875, 1219
AccB1I	GGYRCC	2 cut(s)	875, 1219
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	2 cut(s)	200, 886
AclWI	GGATC	1 cut(s)	1169
AcsI	RAATTY	1 cut(s)	977
AcuI	CTGAAG	1 cut(s)	912
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	5 cut(s)	197, 877, 1181, 1221, 1271
AfiI	CCNNNNNNNGG	2 cut(s)	1184, 1271
AflIII	ACRYGT	1 cut(s)	884
AgeI	ACCGGT	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	20, 535, 973
AluBI	AGCT	4 cut(s)	470, 677, 803, 1296
AluI	AGCT	4 cut(s)	470, 677, 803, 1296
Alw26I	GTCTC	2 cut(s)	638, 997
AlwI	GGATC	1 cut(s)	1169
Ama87I	CYCGRG	2 cut(s)	826, 1234
ApeKI	GCWGC	3 cut(s)	677, 1141, 1250
ApoI	RAATTY	1 cut(s)	977
AsiGI	ACCGGT	1 cut(s)	554
Asp718I	GGTACC	2 cut(s)	875, 1219
AspLEI	GCGC	2 cut(s)	202, 810
AspS9I	GGNCC	3 cut(s)	581, 756, 815
AvaI	CYCGRG	2 cut(s)	826, 1234
AvaII	GGWCC	3 cut(s)	581, 756, 815
BanI	GGYRCC	2 cut(s)	875, 1219
BauI	CACGAG	2 cut(s)	261, 641
BbsI	GAAGAC	2 cut(s)	839, 960
BbvI	GCAGC	3 cut(s)	664, 1153, 1237
BccI	CCATC	2 cut(s)	261, 328
BceAI	ACGGC	1 cut(s)	193
BciVI	GTATCC	6 cut(s)	171, 240, 672, 854, 1205, 1254
BcoDI	GTCTC	2 cut(s)	638, 997
BfaI	CTAG	4 cut(s)	543, 795, 939, 1146
BfuI	GTATCC	6 cut(s)	171, 240, 672, 854, 1205, 1254
BisI	GCNGC	8 cut(s)	86, 89, 143, 203, 206, 678, 1142, 1251
BlsI	GCNGC	8 cut(s)	87, 90, 144, 204, 207, 679, 1143, 1252
Bme18I	GGWCC	3 cut(s)	581, 756, 815
BmeT110I	CYCGRG	2 cut(s)	826, 1234
BmgT120I	GGNCC	3 cut(s)	581, 756, 815
BmiI	GGNNCC	2 cut(s)	877, 1221
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	6 cut(s)	144, 283, 334, 685, 819, 1010
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	2 cut(s)	839, 960
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BsaBI	GATNNNNATC	2 cut(s)	45, 324
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	36, 827
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	1184, 1271
Bse118I	RCCGGY	2 cut(s)	97, 554
Bse1I	ACTGG	5 cut(s)	50, 155, 335, 542, 709
Bse3DI	GCAATG	1 cut(s)	771
Bse8I	GATNNNNATC	2 cut(s)	45, 324
BseDI	CCNNGG	2 cut(s)	36, 827
BseGI	GGATG	5 cut(s)	46, 159, 339, 343, 1025
BseJI	GATNNNNATC	2 cut(s)	45, 324
BseLI	CCNNNNNNNGG	2 cut(s)	1184, 1271
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	2 cut(s)	645, 762
BseNI	ACTGG	5 cut(s)	50, 155, 335, 542, 709
BseRI	GAGGAG	3 cut(s)	63, 125, 1073
BseXI	GCAGC	3 cut(s)	664, 1153, 1237
BsgI	GTGCAG	1 cut(s)	1236
Bsh1236I	CGCG	2 cut(s)	200, 886
BshNI	GGYRCC	2 cut(s)	875, 1219
BshTI	ACCGGT	1 cut(s)	554
BsiHKCI	CYCGRG	2 cut(s)	826, 1234
BsiSI	CCGG	3 cut(s)	98, 369, 555
BslFI	GGGAC	5 cut(s)	442, 511, 911, 1096, 1134
BslI	CCNNNNNNNGG	2 cut(s)	1184, 1271
BsmAI	GTCTC	2 cut(s)	638, 997
BsmFI	GGGAC	5 cut(s)	442, 511, 911, 1096, 1134
Bso31I	GGTCTC	1 cut(s)	638
BsoBI	CYCGRG	2 cut(s)	826, 1234
Bsp143I	GATC	2 cut(s)	586, 1174
BspCNI	CTCAG	2 cut(s)	646, 763
BspFNI	CGCG	2 cut(s)	200, 886
BspLI	GGNNCC	2 cut(s)	877, 1221
BspPI	GGATC	1 cut(s)	1169
BspT107I	GGYRCC	2 cut(s)	875, 1219
BspTNI	GGTCTC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	2 cut(s)	97, 554
BsrI	ACTGG	5 cut(s)	50, 155, 335, 542, 709
BssAI	RCCGGY	2 cut(s)	97, 554
BssECI	CCNNGG	2 cut(s)	36, 827
BssMI	GATC	2 cut(s)	586, 1174
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	2 cut(s)	261, 641
Bst2BI	CACGAG	2 cut(s)	261, 641
Bst4CI	ACNGT	5 cut(s)	172, 1087, 1105, 1194, 1274
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	654, 771
BstF5I	GGATG	5 cut(s)	46, 159, 339, 343, 1025
BstFNI	CGCG	2 cut(s)	200, 886
BstHHI	GCGC	2 cut(s)	202, 810
BstKTI	GATC	2 cut(s)	589, 1177
BstMAI	GTCTC	2 cut(s)	638, 997
BstMBI	GATC	2 cut(s)	586, 1174
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 94, 1061
BstNSI	RCATGY	1 cut(s)	868
BstUI	CGCG	2 cut(s)	200, 886
BstV1I	GCAGC	3 cut(s)	664, 1153, 1237
BstV2I	GAAGAC	2 cut(s)	839, 960
BsuI	GTATCC	6 cut(s)	171, 240, 672, 854, 1205, 1254
BtsCI	GGATG	5 cut(s)	46, 159, 339, 343, 1025
BtsIMutI	CAGTG	4 cut(s)	57, 148, 328, 945
Cac8I	GCNNGC	1 cut(s)	99
CfoI	GCGC	2 cut(s)	202, 810
Cfr10I	RCCGGY	2 cut(s)	97, 554
Cfr13I	GGNCC	3 cut(s)	581, 756, 815
CseI	GACGC	2 cut(s)	875, 892
Csp6I	GTAC	5 cut(s)	196, 876, 1180, 1220, 1270
CspAI	ACCGGT	1 cut(s)	554
CviAII	CATG	3 cut(s)	461, 865, 1216
CviQI	GTAC	5 cut(s)	196, 876, 1180, 1220, 1270
DdeI	CTNAG	2 cut(s)	654, 771
DpnI	GATC	2 cut(s)	588, 1176
DpnII	GATC	2 cut(s)	586, 1174
DrdI	GACNNNNNNGTC	1 cut(s)	941
DseDI	GACNNNNNNGTC	1 cut(s)	941
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	3 cut(s)	66, 72, 129
Eco31I	GGTCTC	1 cut(s)	638
Eco47I	GGWCC	3 cut(s)	581, 756, 815
Eco57I	CTGAAG	1 cut(s)	912
Eco88I	CYCGRG	2 cut(s)	826, 1234
EcoRI	GAATTC	1 cut(s)	977
FaeI	CATG	3 cut(s)	464, 868, 1219
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	5 cut(s)	442, 511, 911, 1096, 1134
FatI	CATG	3 cut(s)	460, 864, 1215
FauI	CCCGC	3 cut(s)	477, 1138, 1255
FauNDI	CATATG	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	8 cut(s)	86, 89, 143, 203, 206, 678, 1142, 1251
FokI	GGATG	5 cut(s)	33, 166, 346, 350, 1032
Fsp4HI	GCNGC	8 cut(s)	86, 89, 143, 203, 206, 678, 1142, 1251
FspAI	RTGCGCAY	1 cut(s)	809
FspBI	CTAG	4 cut(s)	543, 795, 939, 1146
FspI	TGCGCA	1 cut(s)	809
GlaI	GCGC	2 cut(s)	201, 809
GluI	GCNGC	8 cut(s)	86, 89, 143, 203, 206, 678, 1142, 1251
HapII	CCGG	3 cut(s)	98, 369, 555
HgaI	GACGC	2 cut(s)	875, 892
HhaI	GCGC	2 cut(s)	202, 810
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	464, 868, 1219
Hin6I	GCGC	2 cut(s)	200, 808
HinP1I	GCGC	2 cut(s)	200, 808
HincII	GTYRAC	2 cut(s)	58, 1042
HindII	GTYRAC	2 cut(s)	58, 1042
HpaI	GTTAAC	1 cut(s)	1042
HpaII	CCGG	3 cut(s)	98, 369, 555
Hpy166II	GTNNAC	2 cut(s)	58, 1042
Hpy188I	TCNGA	9 cut(s)	25, 31, 40, 135, 189, 234, 430, 628, 655
Hpy188III	TCNNGA	3 cut(s)	13, 890, 1000
Hpy8I	GTNNAC	2 cut(s)	58, 1042
Hpy99I	CGWCG	2 cut(s)	377, 670
HpyAV	CCTTC	5 cut(s)	257, 391, 425, 658, 887
HpyCH4III	ACNGT	5 cut(s)	172, 1087, 1105, 1194, 1274
HpyCH4IV	ACGT	2 cut(s)	9, 1123
HpyCH4V	TGCA	4 cut(s)	325, 640, 1055, 1253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 94, 1061
HpyF3I	CTNAG	2 cut(s)	654, 771
HpySE526I	ACGT	2 cut(s)	9, 1123
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	464, 868, 1219
HspAI	GCGC	2 cut(s)	200, 808
KpnI	GGTACC	2 cut(s)	879, 1223
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
KspAI	GTTAAC	1 cut(s)	1042
Kzo9I	GATC	2 cut(s)	586, 1174
Lsp1109I	GCAGC	3 cut(s)	664, 1153, 1237
LweI	GCATC	6 cut(s)	144, 283, 334, 685, 819, 1010
MaeI	CTAG	4 cut(s)	543, 795, 939, 1146
MaeII	ACGT	2 cut(s)	9, 1123
MaeIII	GTNAC	2 cut(s)	612, 943
MalI	GATC	2 cut(s)	588, 1176
MboI	GATC	2 cut(s)	586, 1174
MboII	GAAGA	4 cut(s)	119, 348, 844, 965
MluCI	AATT	4 cut(s)	352, 631, 977, 1089
MluI	ACGCGT	1 cut(s)	884
MlyI	GAGTC	3 cut(s)	130, 464, 929
MmeI	TCCRAC	2 cut(s)	158, 904
MroNI	GCCGGC	1 cut(s)	97
MseI	TTAA	7 cut(s)	288, 351, 492, 672, 786, 959, 1041
MspA1I	CMGCKG	1 cut(s)	1250
MspI	CCGG	3 cut(s)	98, 369, 555
MvnI	CGCG	2 cut(s)	200, 886
MwoI	GCNNNNNNNGC	3 cut(s)	85, 94, 1061
NaeI	GCCGGC	1 cut(s)	99
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	2 cut(s)	586, 1174
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	3 cut(s)	464, 868, 1219
NlaIV	GGNNCC	2 cut(s)	877, 1221
NmuCI	GTSAC	2 cut(s)	612, 943
NsbI	TGCGCA	1 cut(s)	809
NspI	RCATGY	1 cut(s)	868
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	8 cut(s)	16, 26, 32, 41, 115, 235, 403, 1003
PinAI	ACCGGT	1 cut(s)	554
PkrI	GCNGC	8 cut(s)	87, 90, 144, 204, 207, 679, 1143, 1252
PleI	GAGTC	3 cut(s)	130, 463, 929
PpsI	GAGTC	3 cut(s)	130, 463, 929
PspN4I	GGNNCC	2 cut(s)	877, 1221
PspPI	GGNCC	3 cut(s)	581, 756, 815
RsaI	GTAC	5 cut(s)	197, 877, 1181, 1221, 1271
RsaNI	GTAC	5 cut(s)	196, 876, 1180, 1220, 1270
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	7 cut(s)	288, 351, 492, 672, 786, 959, 1041
SatI	GCNGC	8 cut(s)	86, 89, 143, 203, 206, 678, 1142, 1251
Sau3AI	GATC	2 cut(s)	586, 1174
Sau96I	GGNCC	3 cut(s)	581, 756, 815
SchI	GAGTC	3 cut(s)	130, 464, 929
SfaNI	GCATC	6 cut(s)	144, 283, 334, 685, 819, 1010
SgrAI	CRCCGGYG	1 cut(s)	554
SinI	GGWCC	3 cut(s)	581, 756, 815
Sse9I	AATT	4 cut(s)	352, 631, 977, 1089
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	4 cut(s)	543, 795, 939, 1146
TaaI	ACNGT	5 cut(s)	172, 1087, 1105, 1194, 1274
TaiI	ACGT	2 cut(s)	12, 1126
TaqI	TCGA	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	803
TasI	AATT	4 cut(s)	352, 631, 977, 1089
TauI	GCSGC	5 cut(s)	88, 91, 145, 205, 208
TfiI	GAWTC	8 cut(s)	16, 26, 32, 41, 115, 235, 403, 1003
Tru1I	TTAA	7 cut(s)	288, 351, 492, 672, 786, 959, 1041
Tru9I	TTAA	7 cut(s)	288, 351, 492, 672, 786, 959, 1041
TscAI	CASTG	4 cut(s)	57, 155, 335, 952
TseFI	GTSAC	2 cut(s)	612, 943
TseI	GCWGC	3 cut(s)	677, 1141, 1250
Tsp45I	GTSAC	2 cut(s)	612, 943
TspDTI	ATGAA	5 cut(s)	765, 791, 920, 966, 990
TspGWI	ACGGA	2 cut(s)	654, 1167
TspRI	CASTG	4 cut(s)	57, 155, 335, 952
VpaK11BI	GGWCC	3 cut(s)	581, 756, 815
XapI	RAATTY	1 cut(s)	977
XceI	RCATGY	1 cut(s)	868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	4 cut(s)	543, 795, 939, 1146
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.