Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

37437324 .. 37441599

Gene Structure 4276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G440700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCAATCGAACGGCTCTGATTCGTCGGTGCAGCAACAGGAGCAGAGTAATCAACGGCCGCCGCCGCAGCAGCAGCAAGCGGCGCAGACTCAGGCGCCGCCGCCGCAGCAGTGGATGGCGATGCAGTATCCGGCGGCGGCTATGGTAATGCAGCACCAGATGATGCCACCTCAGCATTACGCGACGCCTCCGCCGCCGCCACCTCAGCACTACATGGCGTACCACCAGTACCAGCAGCAGCAGCAGCACGTACAACACCTTCAGCAGCAGCAGCAGTTGGGATCTAGCGGCGAGAATAAGACCATCTGGGTCGGTGATTTACACCATTGGATGGACGAGAATTATCTCCACACCTGCTTCGCTTCCACTGGCGAGATTGCCTCCATCAAGGTTATTCGGAACAAGCAGACTCTTTTATCAGAGGGCTATGGATTTGTAGAATTTTTTTCACATGCAACAGCTGAGAAAGTTCTACAGACCTATACTGGCATTTTAATGCCCAACACGGAACAACCCTTCCGTCTGAACTGGGCAACATTTAGCACGGGCGATAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTATTGCACGAAACTTTTTCTAGTAAATATCCGTCTGTTAAAGCTGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTTGTGAGGTTTGGAGATGAGAATGAAAGGTCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCGAGCAGACCTATGCGCATTGGGGCTGCAACTCCTAGGAAATCATCTGGATATCAGCAACAGTACTCTTCACAAGGGGGGTATGTTTCAAATGGTACACCAACCCAAGGGTTCCAATCTGATGGAGATTCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCTAATGTTACCGATGAAGATCTCAGGCACCCCTTCTCTCAGTATGGAGAGATAGTCTCTGTTAAAATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCTAACAGAAATAACGCTGAGGAGGCATTGCCGAAACTGAATGGCACAGTAATTGGCAAGCAAACAGTCAGACTTTCATGGGGCCGCAATCCAGCAAATAAGCAGCAGTTTAGAACGGATTTTGGCAACCAATGGGCCGGAGCTTACTATGGAGGTCCTGTTTATGATGGTTATGGTTATGCTCTGCCACCACATCATGACCCAAGCATGTATGCTGCGGCCGCATATGGAGCCTATCCAGTTTATGGCACCCACCAACAACAAGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

440

Amino Acids

48.71

Weight (kDa)

6.3

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc16I	TGCGCA	1 cut(s)	797
Acc36I	ACCTGC	1 cut(s)	362
AccB1I	GGYRCC	3 cut(s)	94, 972, 1295
AccB7I	CCANNNNNTGG	2 cut(s)	331, 1292
AccII	CGCG	1 cut(s)	182
AclWI	GGATC	2 cut(s)	289, 938
AcoI	YGGCCR	3 cut(s)	56, 694, 1266
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	2 cut(s)	95, 185
AfaI	GTAC	6 cut(s)	221, 230, 252, 845, 877, 1041
AfiI	CCNNNNNNNGG	4 cut(s)	331, 703, 887, 1292
AgsI	TTSAA	2 cut(s)	702, 870
AloI	GAACNNNNNNTCC	2 cut(s)	501, 533
AluBI	AGCT	5 cut(s)	461, 602, 665, 1190, 1317
AluI	AGCT	5 cut(s)	461, 602, 665, 1190, 1317
Alw26I	GTCTC	1 cut(s)	1006
AlwI	GGATC	2 cut(s)	289, 938
AoxI	GGCC	5 cut(s)	56, 694, 1129, 1182, 1266
ApoI	RAATTY	1 cut(s)	440
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	3 cut(s)	85, 97, 798
AspS9I	GGNCC	3 cut(s)	1129, 1182, 1202
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	1202
AvrII	CCTAGG	1 cut(s)	815
BanI	GGYRCC	3 cut(s)	94, 972, 1295
BarI	GAAGNNNNNNTAC	2 cut(s)	243, 275
BbvCI	CCTCAGC	3 cut(s)	171, 204, 1065
BccI	CCATC	6 cut(s)	109, 311, 325, 392, 896, 1208
BceAI	ACGGC	3 cut(s)	28, 71, 681
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	1006
BfaI	CTAG	3 cut(s)	285, 642, 816
BfmI	CTRYAG	2 cut(s)	473, 603
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	138
BglII	AGATCT	1 cut(s)	964
BlnI	CCTAGG	1 cut(s)	815
BmcAI	AGTACT	1 cut(s)	845
Bme18I	GGWCC	1 cut(s)	1202
BmgT120I	GGNCC	3 cut(s)	1129, 1182, 1202
BmiI	GGNNCC	6 cut(s)	96, 893, 974, 1130, 1279, 1297
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	3 cut(s)	111, 153, 673
BmuI	ACTGGG	1 cut(s)	538
BplI	GAGNNNNNCTC	4 cut(s)	365, 397, 986, 1018
Bpu10I	CCTNAGC	3 cut(s)	171, 204, 1065
BsaAI	YACGTR	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	963
BsaHI	GRCGYC	2 cut(s)	95, 185
BsaJI	CCNNGG	2 cut(s)	815, 886
BsaXI	ACNNNNNCTCC	4 cut(s)	984, 1014, 1191, 1221
Bsc4I	CCNNNNNNNGG	4 cut(s)	331, 703, 887, 1292
Bse1I	ACTGG	6 cut(s)	226, 373, 490, 533, 697, 1286
Bse3DI	GCAATG	1 cut(s)	1073
Bse8I	GATNNNNATC	1 cut(s)	963
BseDI	CCNNGG	2 cut(s)	815, 886
BseGI	GGATG	3 cut(s)	120, 336, 1034
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	4 cut(s)	331, 703, 887, 1292
BseMI	GCAATG	1 cut(s)	1073
BseMII	CTCAG	7 cut(s)	104, 185, 218, 453, 982, 998, 1056
BseNI	ACTGG	6 cut(s)	226, 373, 490, 533, 697, 1286
BseRI	GAGGAG	1 cut(s)	1082
BseX3I	CGGCCG	2 cut(s)	56, 1266
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	2 cut(s)	59, 1269
BshFI	GGCC	5 cut(s)	58, 696, 1131, 1184, 1268
BshNI	GGYRCC	3 cut(s)	94, 972, 1295
BsiEI	CGRYCG	2 cut(s)	59, 1269
BsiSI	CCGG	2 cut(s)	131, 1185
BslI	CCNNNNNNNGG	4 cut(s)	331, 703, 887, 1292
BsmAI	GTCTC	1 cut(s)	1006
BsnI	GGCC	5 cut(s)	58, 696, 1131, 1184, 1268
Bsp1407I	TGTACA	1 cut(s)	1039
Bsp143I	GATC	4 cut(s)	281, 574, 943, 964
BspANI	GGCC	5 cut(s)	58, 696, 1131, 1184, 1268
BspCNI	CTCAG	7 cut(s)	103, 184, 217, 454, 981, 997, 1057
BspFNI	CGCG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	1243
BspLI	GGNNCC	6 cut(s)	96, 893, 974, 1130, 1279, 1297
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	2 cut(s)	289, 938
BspT107I	GGYRCC	3 cut(s)	94, 972, 1295
BsrDI	GCAATG	1 cut(s)	1073
BsrGI	TGTACA	1 cut(s)	1039
BsrI	ACTGG	6 cut(s)	226, 373, 490, 533, 697, 1286
BssECI	CCNNGG	2 cut(s)	815, 886
BssMI	GATC	4 cut(s)	281, 574, 943, 964
BssNI	GRCGYC	2 cut(s)	95, 185
BssT1I	CCWWGG	2 cut(s)	815, 886
Bst4CI	ACNGT	3 cut(s)	843, 1096, 1114
Bst6I	CTCTTC	1 cut(s)	853
BstACI	GRCGYC	2 cut(s)	95, 185
BstAUI	TGTACA	1 cut(s)	1039
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	78, 1106
BstDEI	CTNAG	7 cut(s)	90, 171, 204, 462, 968, 984, 1065
BstF5I	GGATG	3 cut(s)	120, 336, 1034
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	3 cut(s)	85, 97, 798
BstKTI	GATC	4 cut(s)	284, 577, 946, 967
BstMAI	GTCTC	1 cut(s)	1006
BstMBI	GATC	4 cut(s)	281, 574, 943, 964
BstMCI	CGRYCG	2 cut(s)	59, 1269
BstNSI	RCATGY	2 cut(s)	455, 1258
BstSFI	CTRYAG	2 cut(s)	473, 603
BstUI	CGCG	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	281, 964
BstXI	CCANNNNNNTGG	1 cut(s)	902
BstYI	RGATCY	2 cut(s)	281, 964
BstZI	CGGCCG	2 cut(s)	56, 1266
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	5 cut(s)	58, 696, 1131, 1184, 1268
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	120, 336, 1034
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	2 cut(s)	116, 366
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	2 cut(s)	78, 1106
CciI	TCATGA	1 cut(s)	1243
CciNI	GCGGCCGC	1 cut(s)	1266
CfoI	GCGC	3 cut(s)	85, 97, 798
Cfr13I	GGNCC	3 cut(s)	1129, 1182, 1202
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	6 cut(s)	220, 229, 251, 844, 876, 1040
CviAII	CATG	5 cut(s)	214, 452, 1125, 1244, 1255
CviQI	GTAC	6 cut(s)	220, 229, 251, 844, 876, 1040
DdeI	CTNAG	7 cut(s)	90, 171, 204, 462, 968, 984, 1065
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	4 cut(s)	283, 576, 945, 966
DpnII	GATC	4 cut(s)	281, 574, 943, 964
EaeI	YGGCCR	3 cut(s)	56, 694, 1266
EagI	CGGCCG	2 cut(s)	56, 1266
Eam1104I	CTCTTC	1 cut(s)	853
EarI	CTCTTC	1 cut(s)	853
EciI	GGCGGA	1 cut(s)	180
EclXI	CGGCCG	2 cut(s)	56, 1266
Eco130I	CCWWGG	2 cut(s)	815, 886
Eco32I	GATATC	1 cut(s)	833
Eco47I	GGWCC	1 cut(s)	1202
Eco52I	CGGCCG	2 cut(s)	56, 1266
Eco57I	CTGAAG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	1202
EcoRV	GATATC	1 cut(s)	833
EcoT14I	CCWWGG	2 cut(s)	815, 886
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	815, 886
FaeI	CATG	5 cut(s)	217, 455, 1128, 1247, 1258
FatI	CATG	5 cut(s)	213, 451, 1124, 1243, 1254
FauNDI	CATATG	1 cut(s)	1273
FokI	GGATG	3 cut(s)	127, 343, 1041
FspAI	RTGCGCAY	1 cut(s)	797
FspBI	CTAG	3 cut(s)	285, 642, 816
FspI	TGCGCA	1 cut(s)	797
GlaI	GCGC	3 cut(s)	84, 96, 797
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	5 cut(s)	58, 696, 1131, 1184, 1268
HapII	CCGG	2 cut(s)	131, 1185
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	3 cut(s)	85, 97, 798
Hin1I	GRCGYC	2 cut(s)	95, 185
Hin1II	CATG	5 cut(s)	217, 455, 1128, 1247, 1258
Hin6I	GCGC	3 cut(s)	83, 95, 796
HinP1I	GCGC	3 cut(s)	83, 95, 796
HinfI	GANTC	4 cut(s)	20, 88, 409, 908
HpaII	CCGG	2 cut(s)	131, 1185
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	878
Hpy188I	TCNGA	7 cut(s)	19, 399, 421, 525, 562, 901, 1118
Hpy188III	TCNNGA	3 cut(s)	572, 828, 1244
Hpy8I	GTNNAC	1 cut(s)	878
Hpy99I	CGWCG	2 cut(s)	28, 187
HpyAV	CCTTC	3 cut(s)	269, 526, 988
HpyCH4III	ACNGT	3 cut(s)	843, 1096, 1114
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	9 cut(s)	4, 31, 124, 151, 455, 605, 628, 668, 809
HpyF3I	CTNAG	7 cut(s)	90, 171, 204, 462, 968, 984, 1065
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	2 cut(s)	95, 185
Hsp92II	CATG	5 cut(s)	217, 455, 1128, 1247, 1258
HspAI	GCGC	3 cut(s)	83, 95, 796
KasI	GGCGCC	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	281, 574, 943, 964
LmnI	GCTCC	4 cut(s)	40, 574, 1187, 1277
LweI	GCATC	3 cut(s)	111, 153, 673
MaeI	CTAG	3 cut(s)	285, 642, 816
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	3 cut(s)	610, 744, 952
MalI	GATC	4 cut(s)	283, 576, 945, 966
MboI	GATC	4 cut(s)	281, 574, 943, 964
MboII	GAAGA	2 cut(s)	840, 974
MflI	RGATCY	2 cut(s)	281, 964
MluCI	AATT	4 cut(s)	340, 440, 1043, 1098
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	2 cut(s)	82, 403
MmeI	TCCRAC	2 cut(s)	913, 1000
MseI	TTAA	3 cut(s)	494, 660, 1008
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	131, 1185
MvnI	CGCG	1 cut(s)	182
NarI	GGCGCC	1 cut(s)	95
NdeI	CATATG	1 cut(s)	1273
NdeII	GATC	4 cut(s)	281, 574, 943, 964
NlaIII	CATG	5 cut(s)	217, 455, 1128, 1247, 1258
NlaIV	GGNNCC	6 cut(s)	96, 893, 974, 1130, 1279, 1297
NmuCI	GTSAC	1 cut(s)	744
NotI	GCGGCCGC	1 cut(s)	1266
NsbI	TGCGCA	1 cut(s)	797
NspI	RCATGY	2 cut(s)	455, 1258
PagI	TCATGA	1 cut(s)	1243
PaqCI	CACCTGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	20, 908
PflMI	CCANNNNNTGG	2 cut(s)	331, 1292
PleI	GAGTC	2 cut(s)	82, 403
PluTI	GGCGCC	1 cut(s)	98
PpsI	GAGTC	2 cut(s)	82, 403
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	1202
Psp5II	RGGWCCY	1 cut(s)	1202
PspN4I	GGNNCC	6 cut(s)	96, 893, 974, 1130, 1279, 1297
PspPI	GGNCC	3 cut(s)	1129, 1182, 1202
PspPPI	RGGWCCY	1 cut(s)	1202
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	281, 964
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	6 cut(s)	221, 230, 252, 845, 877, 1041
RsaNI	GTAC	6 cut(s)	220, 229, 251, 844, 876, 1040
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	494, 660, 1008
Sau3AI	GATC	4 cut(s)	281, 574, 943, 964
Sau96I	GGNCC	3 cut(s)	1129, 1182, 1202
ScaI	AGTACT	1 cut(s)	845
SchI	GAGTC	2 cut(s)	82, 403
SfaNI	GCATC	3 cut(s)	111, 153, 673
SfcI	CTRYAG	2 cut(s)	473, 603
SfoI	GGCGCC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	1202
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	4 cut(s)	340, 440, 1043, 1098
SspDI	GGCGCC	1 cut(s)	94
SspI	AATATT	1 cut(s)	927
SspMI	CTAG	3 cut(s)	285, 642, 816
StyI	CCWWGG	2 cut(s)	815, 886
TaaI	ACNGT	3 cut(s)	843, 1096, 1114
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	8, 782
TasI	AATT	4 cut(s)	340, 440, 1043, 1098
TatI	WGTACW	2 cut(s)	843, 1039
TfiI	GAWTC	2 cut(s)	20, 908
Tru1I	TTAA	3 cut(s)	494, 660, 1008
Tru9I	TTAA	3 cut(s)	494, 660, 1008
TscAI	CASTG	2 cut(s)	116, 373
TseFI	GTSAC	1 cut(s)	744
Tsp45I	GTSAC	1 cut(s)	744
TspDTI	ATGAA	4 cut(s)	753, 779, 975, 1113
TspGWI	ACGGA	4 cut(s)	509, 521, 642, 1178
TspRI	CASTG	2 cut(s)	116, 373
Van91I	CCANNNNNTGG	2 cut(s)	331, 1292
VpaK11BI	GGWCC	1 cut(s)	1202
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	2 cut(s)	455, 1258
XmaJI	CCTAGG	1 cut(s)	815
XspI	CTAG	3 cut(s)	285, 642, 816
ZrmI	AGTACT	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.