Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

65302125 .. 65306438

Gene Structure 4314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGCAATCCAACGGCTCGGATTCCTCCCTGCAGCAGCAACAGGAGCAAAGTACTCAGCCACGTCAGCAGCCGCAGCCTCAGTCGCAGCCGCCGCCGCCGCCGCAGCAGCAGTGGATGGCGATGCAGTACCCAGCGGCCGCGATGGTAATGCAGCACCAAATGATGCCACCGCAGCATTACGCGCCTCCGCCGCAACACTACATGGCGTACCACCAGTACCAGCAGCACCCGCAGCAGCACGTGCAGCAGCAGCAGATGGGATCTGGCGGCGGCGAGAACAAGACCATCTGGGTCGGCGATTTGCACCACTGGATGGACGAGAATTACCTCCACAGCTGCTTCGCTTCCGCCGGCGAGATTGCCTCCATCAAGGTTATCCGCAATAAGCAGACTCTTTTATCAGAGGGCTATGGATTTGTAGAATTCTTTTCACATGCTACAGCTGAGAAAGTCCTACAGAACTATGCTGCAATTTTAATGCCTAACACGGAACAGCCCTTCCGTCTGAACTGGGCAACATTTAGTACGGGTGACAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGACTTAGCTGCAGATGTTACAGATAGTTTATTGCACGAAACTTTTTCTAGTAAATATCCATCTGTTAAAGCCGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTACGGTTTTGTGAGGTTTGGCGACGAGAATGAAAGGTCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGATATCAGCAGCAAGGGGGGTATGCTCTGAATGGTACACCAGCCCAAGGGTTCCAATCTGATGGAGATGCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCCAATGTTACTGATGAAGATCTCAGGCAGCCTTTCTCTCAGTATGGCGAGATCGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTACAATTTGCCAATAGAAATAATGCTGAGGAGGCATTGCCGAAACTGAATGGCTCAGTAATTGGCAAGCAAACAGTCCGACTTTCATGGGGTCGCAATCCAGCAAATAAGCAGGCATTCTTTCTTTCTTATAACCTTCTGTCCCGAAAACACCCCAACCATTATTGTGCTTGTTGTGGGAGTGGTCTGTTCTTCACTTGGAATAAGGCTTGTTATTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

410

Amino Acids

45.63

Weight (kDa)

7.2

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	96 - 157	9.1e-11	RNA recognition motif
RRM_1	PF00076	189 - 258	1.3e-15	RNA recognition motif
RRM_1	PF00076	299 - 362	5e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1140
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccII	CGCG	2 cut(s)	140, 182
AclWI	GGATC	2 cut(s)	268, 908
AcoI	YGGCCR	2 cut(s)	135, 676
AcsI	RAATTY	1 cut(s)	422
AcvI	CACGTG	1 cut(s)	241
AfaI	GTAC	7 cut(s)	52, 128, 209, 218, 526, 847, 1011
AfiI	CCNNNNNNNGG	3 cut(s)	313, 685, 857
AgsI	TTSAA	1 cut(s)	684
AjiI	CACGTC	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	483, 515
AluBI	AGCT	3 cut(s)	336, 443, 584
AluI	AGCT	3 cut(s)	336, 443, 584
Alw26I	GTCTC	2 cut(s)	570, 976
AlwI	GGATC	2 cut(s)	268, 908
AoxI	GGCC	3 cut(s)	135, 676, 770
ApoI	RAATTY	1 cut(s)	422
AspA2I	CCTAGG	1 cut(s)	797
AspLEI	GCGC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	542
AvrII	CCTAGG	1 cut(s)	797
BbrPI	CACGTG	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	1035
BccI	CCATC	8 cut(s)	109, 136, 250, 293, 307, 374, 643, 866
BceAI	ACGGC	2 cut(s)	28, 663
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BcoDI	GTCTC	2 cut(s)	570, 976
BfaI	CTAG	3 cut(s)	624, 765, 798
BfmI	CTRYAG	4 cut(s)	29, 438, 455, 585
BglII	AGATCT	1 cut(s)	934
BlnI	CCTAGG	1 cut(s)	797
BmcAI	AGTACT	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	863
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	4 cut(s)	111, 153, 655, 868
BmuI	ACTGGG	1 cut(s)	520
BplI	GAGNNNNNCTC	4 cut(s)	347, 379, 956, 988
Bpu10I	CCTNAGC	1 cut(s)	1035
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	933
BsaJI	CCNNGG	2 cut(s)	797, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 685, 857
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	5 cut(s)	214, 314, 515, 679, 986
Bse3DI	GCAATG	1 cut(s)	1043
Bse8I	GATNNNNATC	1 cut(s)	933
BseDI	CCNNGG	2 cut(s)	797, 856
BseGI	GGATG	3 cut(s)	120, 318, 1004
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	3 cut(s)	313, 685, 857
BseMI	GCAATG	1 cut(s)	1043
BseMII	CTCAG	7 cut(s)	68, 92, 435, 952, 968, 1026, 1077
BseNI	ACTGG	5 cut(s)	214, 314, 515, 679, 986
BseRI	GAGGAG	1 cut(s)	1052
BseX3I	CGGCCG	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	2 cut(s)	140, 182
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	137, 678, 772
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	1135
BslI	CCNNNNNNNGG	3 cut(s)	313, 685, 857
BsmAI	GTCTC	2 cut(s)	570, 976
BsmBI	CGTCTC	1 cut(s)	976
BsmFI	GGGAC	1 cut(s)	1135
BsmI	GAATGC	1 cut(s)	1124
BsnI	GGCC	3 cut(s)	137, 678, 772
Bsp1407I	TGTACA	1 cut(s)	1009
Bsp143I	GATC	5 cut(s)	260, 556, 913, 934, 966
BspANI	GGCC	3 cut(s)	137, 678, 772
BspCNI	CTCAG	7 cut(s)	67, 91, 436, 951, 967, 1027, 1076
BspFNI	CGCG	2 cut(s)	140, 182
BspLI	GGNNCC	1 cut(s)	863
BspMAI	CTGCAG	2 cut(s)	33, 589
BspPI	GGATC	2 cut(s)	268, 908
BsrDI	GCAATG	1 cut(s)	1043
BsrFI	RCCGGY	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	1009
BsrI	ACTGG	5 cut(s)	214, 314, 515, 679, 986
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	797, 856
BssMI	GATC	5 cut(s)	260, 556, 913, 934, 966
BssT1I	CCWWGG	2 cut(s)	797, 856
Bst4CI	ACNGT	2 cut(s)	695, 1084
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	1009
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	4 cut(s)	352, 770, 1076, 1122
BstDEI	CTNAG	8 cut(s)	54, 78, 444, 580, 938, 954, 1035, 1063
BstF5I	GGATG	3 cut(s)	120, 318, 1004
BstFNI	CGCG	2 cut(s)	140, 182
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	5 cut(s)	263, 559, 916, 937, 969
BstMAI	GTCTC	2 cut(s)	570, 976
BstMBI	GATC	5 cut(s)	260, 556, 913, 934, 966
BstMCI	CGRYCG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	437
BstSFI	CTRYAG	4 cut(s)	29, 438, 455, 585
BstUI	CGCG	2 cut(s)	140, 182
BstX2I	RGATCY	2 cut(s)	260, 934
BstXI	CCANNNNNNTGG	1 cut(s)	872
BstYI	RGATCY	2 cut(s)	260, 934
BstZI	CGGCCG	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	137, 678, 772
BtgZI	GCGATG	2 cut(s)	134, 155
BtrI	CACGTC	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	120, 318, 1004
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	2 cut(s)	116, 307
Cac8I	GCNNGC	4 cut(s)	352, 770, 1076, 1122
CciNI	GCGGCCGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	350
Csp6I	GTAC	7 cut(s)	51, 127, 208, 217, 525, 846, 1010
CviAII	CATG	3 cut(s)	202, 434, 1095
CviQI	GTAC	7 cut(s)	51, 127, 208, 217, 525, 846, 1010
DdeI	CTNAG	8 cut(s)	54, 78, 444, 580, 938, 954, 1035, 1063
DpnI	GATC	5 cut(s)	262, 558, 915, 936, 968
DpnII	GATC	5 cut(s)	260, 556, 913, 934, 966
EaeI	YGGCCR	2 cut(s)	135, 676
EagI	CGGCCG	1 cut(s)	135
EciI	GGCGGA	2 cut(s)	177, 337
EclXI	CGGCCG	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	797, 856
Eco147I	AGGCCT	1 cut(s)	772
Eco32I	GATATC	1 cut(s)	815
Eco52I	CGGCCG	1 cut(s)	135
Eco72I	CACGTG	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	422
EcoRV	GATATC	1 cut(s)	815
EcoT14I	CCWWGG	2 cut(s)	797, 856
ErhI	CCWWGG	2 cut(s)	797, 856
Esp3I	CGTCTC	1 cut(s)	976
FaeI	CATG	3 cut(s)	205, 437, 1098
FaqI	GGGAC	1 cut(s)	1135
FatI	CATG	3 cut(s)	201, 433, 1094
FauI	CCCGC	1 cut(s)	237
FokI	GGATG	3 cut(s)	127, 325, 1011
FspBI	CTAG	3 cut(s)	624, 765, 798
GlaI	GCGC	1 cut(s)	183
GsaI	CCCAGC	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	137, 678, 772
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	205, 437, 1098
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	2 cut(s)	20, 391
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	848
Hpy188I	TCNGA	7 cut(s)	19, 403, 507, 544, 840, 871, 1088
Hpy188III	TCNNGA	3 cut(s)	554, 810, 1152
Hpy8I	GTNNAC	1 cut(s)	848
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	2 cut(s)	508, 1154
HpyCH4III	ACNGT	2 cut(s)	695, 1084
HpyCH4IV	ACGT	2 cut(s)	61, 240
HpyF3I	CTNAG	8 cut(s)	54, 78, 444, 580, 938, 954, 1035, 1063
HpySE526I	ACGT	2 cut(s)	61, 240
Hsp92II	CATG	3 cut(s)	205, 437, 1098
HspAI	GCGC	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	260, 556, 913, 934, 966
LmnI	GCTCC	2 cut(s)	43, 556
LweI	GCATC	4 cut(s)	111, 153, 655, 868
MaeI	CTAG	3 cut(s)	624, 765, 798
MaeII	ACGT	2 cut(s)	61, 240
MaeIII	GTNAC	4 cut(s)	530, 592, 726, 922
MalI	GATC	5 cut(s)	262, 558, 915, 936, 968
MboI	GATC	5 cut(s)	260, 556, 913, 934, 966
MboII	GAAGA	2 cut(s)	944, 1192
MflI	RGATCY	2 cut(s)	260, 934
MluCI	AATT	5 cut(s)	322, 422, 471, 1013, 1068
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	4 cut(s)	33, 883, 970, 1111
MreI	CGCCGGCG	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	3 cut(s)	476, 642, 978
MslI	CAYNNNNRTG	1 cut(s)	1173
MspA1I	CMGCKG	3 cut(s)	134, 336, 443
MspI	CCGG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	1124
MvnI	CGCG	2 cut(s)	140, 182
NaeI	GCCGGC	1 cut(s)	352
NdeII	GATC	5 cut(s)	260, 556, 913, 934, 966
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	205, 437, 1098
NlaIV	GGNNCC	1 cut(s)	863
NmuCI	GTSAC	2 cut(s)	530, 726
NotI	GCGGCCGC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	437
PceI	AGGCCT	1 cut(s)	772
PctI	GAATGC	1 cut(s)	1124
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	313
PleI	GAGTC	1 cut(s)	385
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	1140
PspCI	CACGTG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	863
PstI	CTGCAG	2 cut(s)	33, 589
PsuI	RGATCY	2 cut(s)	260, 934
PvuII	CAGCTG	2 cut(s)	336, 443
RsaI	GTAC	7 cut(s)	52, 128, 209, 218, 526, 847, 1011
RsaNI	GTAC	7 cut(s)	51, 127, 208, 217, 525, 846, 1010
RseI	CAYNNNNRTG	1 cut(s)	1173
SaqAI	TTAA	3 cut(s)	476, 642, 978
Sau3AI	GATC	5 cut(s)	260, 556, 913, 934, 966
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	385
SfaNI	GCATC	4 cut(s)	111, 153, 655, 868
SfcI	CTRYAG	4 cut(s)	29, 438, 455, 585
SgrAI	CRCCGGYG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	1173
Sse9I	AATT	5 cut(s)	322, 422, 471, 1013, 1068
SseBI	AGGCCT	1 cut(s)	772
SspI	AATATT	1 cut(s)	897
SspMI	CTAG	3 cut(s)	624, 765, 798
StuI	AGGCCT	1 cut(s)	772
StyI	CCWWGG	2 cut(s)	797, 856
TaaI	ACNGT	2 cut(s)	695, 1084
TaiI	ACGT	2 cut(s)	64, 243
TasI	AATT	5 cut(s)	322, 422, 471, 1013, 1068
TatI	WGTACW	2 cut(s)	50, 1009
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	476, 642, 978
Tru9I	TTAA	3 cut(s)	476, 642, 978
TscAI	CASTG	2 cut(s)	116, 314
TseFI	GTSAC	2 cut(s)	530, 726
Tsp45I	GTSAC	2 cut(s)	530, 726
TspDTI	ATGAA	4 cut(s)	735, 761, 945, 1083
TspGWI	ACGGA	2 cut(s)	491, 503
TspRI	CASTG	2 cut(s)	116, 314
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	437
XmaJI	CCTAGG	1 cut(s)	797
XspI	CTAG	3 cut(s)	624, 765, 798
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.