Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

25822501 .. 25826628

Gene Structure 4128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCAATCCAACGGCTCCGACTCCTCGCTGCAGCAACAGGAGCAAAATACTACTCAGCCGCAGCCACGTCAGCAGCAGCCTCCTCCTCATCCTCCGCAGTCGCAGCCGCCGCCACCGCAGTGGATGGCGATGCAGTACCCGGCGGCTGCAATGGTAATGCAGCACCAAATGATGCCACCGCAGCATTACGCGCCTCCGCCGCCACACTACATGGCGTACCACCAGTACCAGCAGCAGCCGCAGCAGCACCTCCAGCAGCAACAGCAGCCGCAGATGGGATCTGGCGGCGGCGGCGGCGGCGGTGGAAGCGGCGAGAACAAGACCATCTGGGTCGGAGATTTGCATCACTGGATGGACGAGAACTACCTCCATAACTGCTTCGCTTCCGCTGGCGAGATTGCTTCCATCAAGGTTATTCGCAATAAGCAGACTCTTTTATCAGAGGGCTATGGATTCGTAGAGTTCTTTTCACATGCTACAGCTGAGAAAGTCATACAGAACTATGCTGCAATTTTAATGCCTAACACAGAACAGCCCTTCCGTCTTAACTGGGCAACATTTAGTACGGGTGACAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGACTTAGCTGCAGATGTTACAGATAGTTTATTGCACGAAACGTTTTCTAGTAAATATCCGTCTGTTAAAGCTGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTACGGTTTTGTGAGGTTTGGCGACGAGAATGAAAGGTCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGCATTGGTGCTGCAACTCCCAGGAAATCTTCTGGATATCAGCAACAAGGGGGGTATGCTCTGAATGGTACACCAACCCAAGGGTTCCAATCTGATGGAGATGCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCCAATGTTACTGATGAAGATCTCAGGCAGCCCTTCTCTCAGTATGGTGAGATTGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTACAATTTGCCAACAGAAATAACGCTGAGGAGGCATTGCCGAAACTGAATGGCTCAGTAATTGGCAAGCAAACAGTCCGGCTTTCATGGGGTCGCAATCCAGCAAATAAGCAGGCATTTTCTCTTTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

394

Amino Acids

43.21

Weight (kDa)

6.41

Isoelectric Point (pI)

58.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	109 - 170	6.3e-11	RNA recognition motif
RRM_1	PF00076	202 - 271	1.5e-15	RNA recognition motif
RRM_1	PF00076	312 - 375	5.7e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	818
AccII	CGCG	1 cut(s)	191
AclI	AACGTT	1 cut(s)	656
AclWI	GGATC	2 cut(s)	286, 947
AcoI	YGGCCR	1 cut(s)	715
AfaI	GTAC	6 cut(s)	137, 218, 227, 565, 886, 1050
AfiI	CCNNNNNNNGG	3 cut(s)	275, 724, 896
AgsI	TTSAA	1 cut(s)	723
AjiI	CACGTC	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	836
AleI	CACNNNNGTG	1 cut(s)	118
AloI	GAACNNNNNNTCC	2 cut(s)	522, 554
AluBI	AGCT	3 cut(s)	482, 623, 686
AluI	AGCT	3 cut(s)	482, 623, 686
Alw26I	GTCTC	2 cut(s)	609, 1015
AlwI	GGATC	2 cut(s)	286, 947
AoxI	GGCC	2 cut(s)	715, 809
AspLEI	GCGC	2 cut(s)	193, 819
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	581, 1013
BbvCI	CCTCAGC	1 cut(s)	1074
BccI	CCATC	6 cut(s)	118, 268, 332, 346, 413, 905
BceAI	ACGGC	2 cut(s)	28, 702
BciT130I	CCWGG	1 cut(s)	838
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	609, 1015
BfaI	CTAG	2 cut(s)	663, 804
BfmI	CTRYAG	3 cut(s)	29, 477, 624
BglII	AGATCT	1 cut(s)	973
Bme1390I	CCNGG	2 cut(s)	140, 838
BmgBI	CACGTC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	16, 902
BmrFI	CCNGG	2 cut(s)	140, 838
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	5 cut(s)	120, 162, 352, 694, 907
BmuI	ACTGGG	1 cut(s)	559
BplI	GAGNNNNNCTC	2 cut(s)	995, 1027
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	1074
BpuMI	CCSGG	1 cut(s)	140
BsaBI	GATNNNNATC	2 cut(s)	342, 972
BsaJI	CCNNGG	2 cut(s)	836, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 724, 896
Bse1I	ACTGG	5 cut(s)	223, 353, 554, 718, 1025
Bse3DI	GCAATG	2 cut(s)	156, 1082
Bse8I	GATNNNNATC	2 cut(s)	342, 972
BseBI	CCWGG	1 cut(s)	838
BseDI	CCNNGG	2 cut(s)	836, 895
BseGI	GGATG	4 cut(s)	88, 129, 357, 1043
BseJI	GATNNNNATC	2 cut(s)	342, 972
BseLI	CCNNNNNNNGG	3 cut(s)	275, 724, 896
BseMI	GCAATG	2 cut(s)	156, 1082
BseMII	CTCAG	6 cut(s)	68, 474, 991, 1007, 1065, 1116
BseNI	ACTGG	5 cut(s)	223, 353, 554, 718, 1025
BseRI	GAGGAG	4 cut(s)	13, 72, 75, 1091
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	717, 811
BsiSI	CCGG	2 cut(s)	140, 1126
BslI	CCNNNNNNNGG	3 cut(s)	275, 724, 896
BsmAI	GTCTC	2 cut(s)	609, 1015
BsnI	GGCC	2 cut(s)	717, 811
Bsp1407I	TGTACA	1 cut(s)	1048
Bsp143I	GATC	4 cut(s)	278, 595, 952, 973
BspANI	GGCC	2 cut(s)	717, 811
BspCNI	CTCAG	6 cut(s)	67, 475, 990, 1006, 1066, 1115
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	16, 902
BspMAI	CTGCAG	2 cut(s)	33, 628
BspPI	GGATC	2 cut(s)	286, 947
BsrDI	GCAATG	2 cut(s)	156, 1082
BsrGI	TGTACA	1 cut(s)	1048
BsrI	ACTGG	5 cut(s)	223, 353, 554, 718, 1025
BssECI	CCNNGG	2 cut(s)	836, 895
BssMI	GATC	4 cut(s)	278, 595, 952, 973
BssT1I	CCWWGG	1 cut(s)	895
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	2 cut(s)	734, 1123
BstAUI	TGTACA	1 cut(s)	1048
BstC8I	GCNNGC	4 cut(s)	391, 809, 1115, 1161
BstDEI	CTNAG	7 cut(s)	54, 483, 619, 977, 993, 1074, 1102
BstF5I	GGATG	4 cut(s)	88, 129, 357, 1043
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	2 cut(s)	193, 819
BstKTI	GATC	4 cut(s)	281, 598, 955, 976
BstMAI	GTCTC	2 cut(s)	609, 1015
BstMBI	GATC	4 cut(s)	278, 595, 952, 973
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	138, 836
BstSFI	CTRYAG	3 cut(s)	29, 477, 624
BstUI	CGCG	1 cut(s)	191
BstX2I	RGATCY	2 cut(s)	278, 973
BstXI	CCANNNNNNTGG	2 cut(s)	120, 911
BstYI	RGATCY	2 cut(s)	278, 973
BsuRI	GGCC	2 cut(s)	717, 811
BtgZI	GCGATG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	4 cut(s)	88, 129, 357, 1043
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	125, 346
Cac8I	GCNNGC	4 cut(s)	391, 809, 1115, 1161
CfoI	GCGC	2 cut(s)	193, 819
Csp6I	GTAC	6 cut(s)	136, 217, 226, 564, 885, 1049
CviAII	CATG	3 cut(s)	211, 473, 1134
CviQI	GTAC	6 cut(s)	136, 217, 226, 564, 885, 1049
DdeI	CTNAG	7 cut(s)	54, 483, 619, 977, 993, 1074, 1102
DpnI	GATC	4 cut(s)	280, 597, 954, 975
DpnII	GATC	4 cut(s)	278, 595, 952, 973
EaeI	YGGCCR	1 cut(s)	715
EciI	GGCGGA	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	895
Eco147I	AGGCCT	1 cut(s)	811
Eco32I	GATATC	1 cut(s)	854
EcoRII	CCWGG	1 cut(s)	836
EcoRV	GATATC	1 cut(s)	854
EcoT14I	CCWWGG	1 cut(s)	895
ErhI	CCWWGG	1 cut(s)	895
FaeI	CATG	3 cut(s)	214, 476, 1137
FatI	CATG	3 cut(s)	210, 472, 1133
FokI	GGATG	4 cut(s)	75, 136, 364, 1050
FspAI	RTGCGCAY	1 cut(s)	818
FspBI	CTAG	2 cut(s)	663, 804
FspI	TGCGCA	1 cut(s)	818
GlaI	GCGC	2 cut(s)	192, 818
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	717, 811
HapII	CCGG	2 cut(s)	140, 1126
HhaI	GCGC	2 cut(s)	193, 819
Hin1II	CATG	3 cut(s)	214, 476, 1137
Hin6I	GCGC	2 cut(s)	191, 817
HinP1I	GCGC	2 cut(s)	191, 817
HinfI	GANTC	3 cut(s)	20, 430, 453
HpaII	CCGG	2 cut(s)	140, 1126
HphI	GGTGA	2 cut(s)	581, 1013
Hpy166II	GTNNAC	1 cut(s)	887
Hpy188I	TCNGA	6 cut(s)	19, 335, 442, 583, 879, 910
Hpy188III	TCNNGA	2 cut(s)	593, 849
Hpy8I	GTNNAC	1 cut(s)	887
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	2 cut(s)	547, 997
HpyCH4III	ACNGT	2 cut(s)	734, 1123
HpyCH4IV	ACGT	2 cut(s)	67, 656
HpyF3I	CTNAG	7 cut(s)	54, 483, 619, 977, 993, 1074, 1102
HpySE526I	ACGT	2 cut(s)	67, 656
Hsp92II	CATG	3 cut(s)	214, 476, 1137
HspAI	GCGC	2 cut(s)	191, 817
Kzo9I	GATC	4 cut(s)	278, 595, 952, 973
LmnI	GCTCC	3 cut(s)	20, 40, 595
LweI	GCATC	5 cut(s)	120, 162, 352, 694, 907
MaeI	CTAG	2 cut(s)	663, 804
MaeII	ACGT	2 cut(s)	67, 656
MaeIII	GTNAC	4 cut(s)	569, 631, 765, 961
MalI	GATC	4 cut(s)	280, 597, 954, 975
MboI	GATC	4 cut(s)	278, 595, 952, 973
MboII	GAAGA	2 cut(s)	837, 983
MflI	RGATCY	2 cut(s)	278, 973
MluCI	AATT	3 cut(s)	510, 1052, 1107
MlyI	GAGTC	2 cut(s)	14, 424
MmeI	TCCRAC	5 cut(s)	33, 42, 313, 922, 1009
MseI	TTAA	4 cut(s)	515, 546, 681, 1017
MslI	CAYNNNNRTG	1 cut(s)	118
MspA1I	CMGCKG	2 cut(s)	389, 482
MspI	CCGG	2 cut(s)	140, 1126
MspR9I	CCNGG	2 cut(s)	140, 838
MvaI	CCWGG	1 cut(s)	838
MvnI	CGCG	1 cut(s)	191
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	4 cut(s)	278, 595, 952, 973
NlaIII	CATG	3 cut(s)	214, 476, 1137
NlaIV	GGNNCC	2 cut(s)	16, 902
NmuCI	GTSAC	2 cut(s)	569, 765
NsbI	TGCGCA	1 cut(s)	818
NspI	RCATGY	1 cut(s)	476
OliI	CACNNNNGTG	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	811
PfeI	GAWTC	1 cut(s)	453
PleI	GAGTC	2 cut(s)	14, 424
PpsI	GAGTC	2 cut(s)	14, 424
Psp1406I	AACGTT	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	836
PspN4I	GGNNCC	2 cut(s)	16, 902
PstI	CTGCAG	2 cut(s)	33, 628
PsuI	RGATCY	2 cut(s)	278, 973
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	6 cut(s)	137, 218, 227, 565, 886, 1050
RsaNI	GTAC	6 cut(s)	136, 217, 226, 564, 885, 1049
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	4 cut(s)	515, 546, 681, 1017
Sau3AI	GATC	4 cut(s)	278, 595, 952, 973
SchI	GAGTC	2 cut(s)	14, 424
ScrFI	CCNGG	2 cut(s)	140, 838
SfaNI	GCATC	5 cut(s)	120, 162, 352, 694, 907
SfcI	CTRYAG	3 cut(s)	29, 477, 624
SmiMI	CAYNNNNRTG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	510, 1052, 1107
SseBI	AGGCCT	1 cut(s)	811
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	2 cut(s)	663, 804
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	2 cut(s)	138, 836
StyI	CCWWGG	1 cut(s)	895
TaaI	ACNGT	2 cut(s)	734, 1123
TaiI	ACGT	2 cut(s)	70, 659
TasI	AATT	3 cut(s)	510, 1052, 1107
TatI	WGTACW	1 cut(s)	1048
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	4 cut(s)	515, 546, 681, 1017
Tru9I	TTAA	4 cut(s)	515, 546, 681, 1017
TscAI	CASTG	2 cut(s)	125, 353
TseFI	GTSAC	2 cut(s)	569, 765
Tsp45I	GTSAC	2 cut(s)	569, 765
TspDTI	ATGAA	4 cut(s)	774, 800, 984, 1122
TspGWI	ACGGA	2 cut(s)	530, 663
TspRI	CASTG	2 cut(s)	125, 353
XceI	RCATGY	1 cut(s)	476
XspI	CTAG	2 cut(s)	663, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.