Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

17432433 .. 17435124

Gene Structure 2692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCAGACGTCAAGGTTCAATCCGAATCCGAATCCTCGGATTCTCATCCCTTGGTCGACTATCAATCACTTCCACCTTATCCTCCGCCGCATCCACCGGTTGAAGTAGAGGAGAATCAACCAAAAACATCTCCGACTCCGCCGCCGCCACACTGGATGCGTTATCCACCGGTGTTAATGCCTCAGATGATGTACGCGCCGCCGCCACCGATGCCGTTCTCACCTTATCATCAATATCCGAATCACCACCACTTTCACCATCAATCTCGTGGTAATAAGCATCAAAACGCTTTTAATGGTGAGAATAAAACTATTTGGGTTGGTGATTTGCAAAACTGGATGGATGAGGCTTATCTTAATTCTGCTTTTACTTCCGCCGAAGAGAGAGAGATTGTTTCGCTGAAGGTGATTCGTAATAAGCACAATGGTTCATCGGAAGGATATGGATTTGTGGAGTTTGAGTCCCATGATGTAGCTGATAAGGTTTTGCAGGAGTTTAACGGGGCGCCTATGCCAAATACTGACCAACCTTTTCGTTTGAACTGGGCTAGTTTTAGCACCGGTGAGAAGCGGTTAGAGAACAATGGACCTGATCTCTCTATATTTGTTGGGGATTTGGCGCCAGATGTTTCGGATGCTTTGTTGCACGAGACCTTCTCTGAGAAGTATCCGTCGGTTAAAGCTGCCAAAGTTGTCCTTGATGCTAATACTGGTAGATCAAAGGGGTATGGGTTTGTGAGGTTTGGAGATGAGAATGAAAGGACCAAAGCAATGACTGAGATGAATGGTGTTAAATGCTCTAGTAGAGCTATGCGTATCGGTCCTGCTACCCCAAGGAAAACTAATGGTTATCAACAACAAGGTGGATACATGCCGAGTGGTGCCTTTACGCGTTCTGAAGGGGACACAATCAACACAACAATATTTGTTGGAGGGCTTGACTCTAGTGTCACTGATGAAGACTTAAAGCAACCTTTCTCTGAATTCGGGGAAATAGTGTCTGTCAAGATTCCTGTTGGTAAAGGATGCGGATTTGTTCAGTTTGTTAACAGACCAAATGCAGAGGAGGCTTTGGAAAAACTCAATGGGACTGTAATTGGCAAACAAACAGTCCGGCTTTCTTGGGGCCGTAATCCAGCCAATAAGCAGCCTAGAGATAAGTATGGAAACCAATGGGTTGATCCGTACTATGGAGGACAGTTTTACAATGGGTATGGATACATGGTACCTCAACCTGACCCGAGAATGTATCCTGCTGCACCTTACTATCCAATGTACGGTGGTCATCAGCAACAAGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

434

Amino Acids

48.63

Weight (kDa)

5.88

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	105 - 173	1e-09	RNA recognition motif
RRM_1	PF00076	201 - 271	3.5e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	947
AatII	GACGTC	1 cut(s)	12
Acc65I	GGTACC	1 cut(s)	1225
AccB1I	GGYRCC	4 cut(s)	505, 619, 881, 1225
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	2 cut(s)	197, 892
AclWI	GGATC	1 cut(s)	1175
AcsI	RAATTY	1 cut(s)	983
AcuI	CTGAAG	2 cut(s)	422, 918
AcyI	GRCGYC	3 cut(s)	9, 506, 620
AfaI	GTAC	4 cut(s)	194, 1187, 1227, 1277
AfiI	CCNNNNNNNGG	2 cut(s)	1190, 1277
AflIII	ACRYGT	1 cut(s)	890
AgeI	ACCGGT	3 cut(s)	97, 169, 560
AgsI	TTSAA	3 cut(s)	20, 104, 541
AluBI	AGCT	4 cut(s)	476, 683, 809, 1302
AluI	AGCT	4 cut(s)	476, 683, 809, 1302
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	1 cut(s)	1175
Ama87I	CYCGRG	1 cut(s)	1240
AoxI	GGCC	1 cut(s)	1126
ApeKI	GCWGC	3 cut(s)	683, 1147, 1256
ApoI	RAATTY	1 cut(s)	983
ArsI	GACNNNNNNTTYG	2 cut(s)	1095, 1127
AsiGI	ACCGGT	3 cut(s)	97, 169, 560
Asp718I	GGTACC	1 cut(s)	1225
AspLEI	GCGC	3 cut(s)	199, 508, 622
AspS9I	GGNCC	4 cut(s)	587, 762, 821, 1126
AsuHPI	GGTGA	7 cut(s)	213, 236, 248, 311, 335, 418, 575
AvaI	CYCGRG	1 cut(s)	1240
AvaII	GGWCC	3 cut(s)	587, 762, 821
BanI	GGYRCC	4 cut(s)	505, 619, 881, 1225
BauI	CACGAG	2 cut(s)	267, 647
BbsI	GAAGAC	1 cut(s)	966
BbvI	GCAGC	3 cut(s)	670, 1159, 1243
BccI	CCATC	2 cut(s)	267, 334
BceAI	ACGGC	2 cut(s)	199, 1113
BciVI	GTATCC	4 cut(s)	678, 860, 1211, 1260
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	4 cut(s)	549, 801, 945, 1152
BfoI	RGCGCY	2 cut(s)	509, 623
BfuI	GTATCC	4 cut(s)	678, 860, 1211, 1260
BisI	GCNGC	8 cut(s)	89, 143, 146, 200, 203, 684, 1148, 1257
BlsI	GCNGC	8 cut(s)	90, 144, 147, 201, 204, 685, 1149, 1258
Bme18I	GGWCC	3 cut(s)	587, 762, 821
BmeT110I	CYCGRG	1 cut(s)	1240
BmgT120I	GGNCC	4 cut(s)	587, 762, 821, 1126
BmiI	GGNNCC	5 cut(s)	507, 621, 883, 1127, 1227
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	7 cut(s)	100, 147, 201, 289, 625, 691, 1016
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	966
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BsaBI	GATNNNNATC	1 cut(s)	45
BsaHI	GRCGYC	3 cut(s)	9, 506, 620
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	3 cut(s)	36, 51, 833
BsaWI	WCCGGW	3 cut(s)	97, 169, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	1190, 1277
Bse118I	RCCGGY	3 cut(s)	97, 169, 560
Bse1I	ACTGG	4 cut(s)	158, 341, 548, 715
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	45
BseDI	CCNNGG	3 cut(s)	36, 51, 833
BseGI	GGATG	7 cut(s)	46, 91, 162, 345, 349, 640, 1031
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	1190, 1277
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	3 cut(s)	197, 651, 768
BseNI	ACTGG	4 cut(s)	158, 341, 548, 715
BseRI	GAGGAG	2 cut(s)	125, 1079
BseXI	GCAGC	3 cut(s)	670, 1159, 1243
BsgI	GTGCAG	1 cut(s)	1242
Bsh1236I	CGCG	2 cut(s)	197, 892
BshFI	GGCC	1 cut(s)	1128
BshNI	GGYRCC	4 cut(s)	505, 619, 881, 1225
BshTI	ACCGGT	3 cut(s)	97, 169, 560
BsiHKCI	CYCGRG	1 cut(s)	1240
BsiSI	CCGG	4 cut(s)	98, 170, 561, 1114
BslFI	GGGAC	3 cut(s)	448, 917, 1102
BslI	CCNNNNNNNGG	2 cut(s)	1190, 1277
BsmAI	GTCTC	1 cut(s)	644
BsmFI	GGGAC	3 cut(s)	448, 917, 1102
BsnI	GGCC	1 cut(s)	1128
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	1240
Bsp143I	GATC	3 cut(s)	592, 716, 1180
BspANI	GGCC	1 cut(s)	1128
BspCNI	CTCAG	3 cut(s)	196, 652, 769
BspFNI	CGCG	2 cut(s)	197, 892
BspLI	GGNNCC	5 cut(s)	507, 621, 883, 1127, 1227
BspPI	GGATC	1 cut(s)	1175
BspT107I	GGYRCC	4 cut(s)	505, 619, 881, 1225
BspTNI	GGTCTC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	3 cut(s)	97, 169, 560
BsrI	ACTGG	4 cut(s)	158, 341, 548, 715
BssAI	RCCGGY	3 cut(s)	97, 169, 560
BssECI	CCNNGG	3 cut(s)	36, 51, 833
BssMI	GATC	3 cut(s)	592, 716, 1180
BssNI	GRCGYC	3 cut(s)	9, 506, 620
BssSI	CACGAG	2 cut(s)	267, 647
BssT1I	CCWWGG	2 cut(s)	51, 833
Bst2BI	CACGAG	2 cut(s)	267, 647
Bst4CI	ACNGT	4 cut(s)	1093, 1111, 1200, 1280
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	3 cut(s)	9, 506, 620
BstDEI	CTNAG	3 cut(s)	183, 660, 777
BstF5I	GGATG	7 cut(s)	46, 91, 162, 345, 349, 640, 1031
BstFNI	CGCG	2 cut(s)	197, 892
BstH2I	RGCGCY	2 cut(s)	509, 623
BstHHI	GCGC	3 cut(s)	199, 508, 622
BstKTI	GATC	3 cut(s)	595, 719, 1183
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	3 cut(s)	592, 716, 1180
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 1067
BstNSI	RCATGY	1 cut(s)	874
BstUI	CGCG	2 cut(s)	197, 892
BstV1I	GCAGC	3 cut(s)	670, 1159, 1243
BstV2I	GAAGAC	1 cut(s)	966
BsuI	GTATCC	4 cut(s)	678, 860, 1211, 1260
BsuRI	GGCC	1 cut(s)	1128
BtsCI	GGATG	7 cut(s)	46, 91, 162, 345, 349, 640, 1031
BtsIMutI	CAGTG	2 cut(s)	151, 951
CfoI	GCGC	3 cut(s)	199, 508, 622
Cfr10I	RCCGGY	3 cut(s)	97, 169, 560
Cfr13I	GGNCC	4 cut(s)	587, 762, 821, 1126
Csp6I	GTAC	4 cut(s)	193, 1186, 1226, 1276
CspAI	ACCGGT	3 cut(s)	97, 169, 560
CviAII	CATG	3 cut(s)	467, 871, 1222
CviQI	GTAC	4 cut(s)	193, 1186, 1226, 1276
DdeI	CTNAG	3 cut(s)	183, 660, 777
DinI	GGCGCC	2 cut(s)	507, 621
DpnI	GATC	3 cut(s)	594, 718, 1182
DpnII	GATC	3 cut(s)	592, 716, 1180
DrdI	GACNNNNNNGTC	1 cut(s)	947
DseDI	GACNNNNNNGTC	1 cut(s)	947
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	3 cut(s)	75, 129, 364
Eco130I	CCWWGG	2 cut(s)	51, 833
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	3 cut(s)	587, 762, 821
Eco57I	CTGAAG	2 cut(s)	422, 918
Eco88I	CYCGRG	1 cut(s)	1240
EcoRI	GAATTC	1 cut(s)	983
EcoT14I	CCWWGG	2 cut(s)	51, 833
EgeI	GGCGCC	2 cut(s)	507, 621
EheI	GGCGCC	2 cut(s)	507, 621
ErhI	CCWWGG	2 cut(s)	51, 833
FaeI	CATG	3 cut(s)	470, 874, 1225
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	3 cut(s)	448, 917, 1102
FatI	CATG	3 cut(s)	466, 870, 1221
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	8 cut(s)	89, 143, 146, 200, 203, 684, 1148, 1257
FokI	GGATG	7 cut(s)	33, 78, 169, 352, 356, 647, 1038
Fsp4HI	GCNGC	8 cut(s)	89, 143, 146, 200, 203, 684, 1148, 1257
FspBI	CTAG	4 cut(s)	549, 801, 945, 1152
GlaI	GCGC	3 cut(s)	198, 507, 621
GluI	GCNGC	8 cut(s)	89, 143, 146, 200, 203, 684, 1148, 1257
HaeII	RGCGCY	2 cut(s)	509, 623
HaeIII	GGCC	1 cut(s)	1128
HapII	CCGG	4 cut(s)	98, 170, 561, 1114
HhaI	GCGC	3 cut(s)	199, 508, 622
Hin1I	GRCGYC	3 cut(s)	9, 506, 620
Hin1II	CATG	3 cut(s)	470, 874, 1225
Hin6I	GCGC	3 cut(s)	197, 506, 620
HinP1I	GCGC	3 cut(s)	197, 506, 620
HincII	GTYRAC	2 cut(s)	58, 1048
HindII	GTYRAC	2 cut(s)	58, 1048
HpaI	GTTAAC	1 cut(s)	1048
HpaII	CCGG	4 cut(s)	98, 170, 561, 1114
HphI	GGTGA	7 cut(s)	213, 236, 248, 311, 335, 418, 575
Hpy166II	GTNNAC	2 cut(s)	58, 1048
Hpy188III	TCNNGA	1 cut(s)	1006
Hpy8I	GTNNAC	2 cut(s)	58, 1048
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	4 cut(s)	397, 431, 664, 893
HpyCH4III	ACNGT	4 cut(s)	1093, 1111, 1200, 1280
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	5 cut(s)	331, 490, 646, 1061, 1259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 1067
HpyF3I	CTNAG	3 cut(s)	183, 660, 777
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	3 cut(s)	9, 506, 620
Hsp92II	CATG	3 cut(s)	470, 874, 1225
HspAI	GCGC	3 cut(s)	197, 506, 620
KasI	GGCGCC	2 cut(s)	505, 619
KpnI	GGTACC	1 cut(s)	1229
KspAI	GTTAAC	1 cut(s)	1048
Kzo9I	GATC	3 cut(s)	592, 716, 1180
Lsp1109I	GCAGC	3 cut(s)	670, 1159, 1243
LweI	GCATC	7 cut(s)	100, 147, 201, 289, 625, 691, 1016
MaeI	CTAG	4 cut(s)	549, 801, 945, 1152
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	949
MalI	GATC	3 cut(s)	594, 718, 1182
MboI	GATC	3 cut(s)	592, 716, 1180
MboII	GAAGA	2 cut(s)	392, 971
MluCI	AATT	3 cut(s)	358, 983, 1095
MluI	ACGCGT	1 cut(s)	890
Mly113I	GGCGCC	2 cut(s)	506, 620
MlyI	GAGTC	3 cut(s)	130, 470, 935
MmeI	TCCRAC	2 cut(s)	158, 910
MseI	TTAA	8 cut(s)	176, 294, 357, 498, 678, 792, 965, 1047
MspI	CCGG	4 cut(s)	98, 170, 561, 1114
MvnI	CGCG	2 cut(s)	197, 892
MwoI	GCNNNNNNNGC	2 cut(s)	211, 1067
NarI	GGCGCC	2 cut(s)	506, 620
NdeII	GATC	3 cut(s)	592, 716, 1180
NlaIII	CATG	3 cut(s)	470, 874, 1225
NlaIV	GGNNCC	5 cut(s)	507, 621, 883, 1127, 1227
NmeAIII	GCCGAG	1 cut(s)	900
NmuCI	GTSAC	1 cut(s)	949
NspI	RCATGY	1 cut(s)	874
PfeI	GAWTC	7 cut(s)	26, 32, 41, 115, 241, 409, 1009
PinAI	ACCGGT	3 cut(s)	97, 169, 560
PkrI	GCNGC	8 cut(s)	90, 144, 147, 201, 204, 685, 1149, 1258
PleI	GAGTC	3 cut(s)	130, 469, 935
PluTI	GGCGCC	2 cut(s)	509, 623
PpsI	GAGTC	3 cut(s)	130, 469, 935
PspN4I	GGNNCC	5 cut(s)	507, 621, 883, 1127, 1227
PspPI	GGNCC	4 cut(s)	587, 762, 821, 1126
RsaI	GTAC	4 cut(s)	194, 1187, 1227, 1277
RsaNI	GTAC	4 cut(s)	193, 1186, 1226, 1276
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	8 cut(s)	176, 294, 357, 498, 678, 792, 965, 1047
SatI	GCNGC	8 cut(s)	89, 143, 146, 200, 203, 684, 1148, 1257
Sau3AI	GATC	3 cut(s)	592, 716, 1180
Sau96I	GGNCC	4 cut(s)	587, 762, 821, 1126
SchI	GAGTC	3 cut(s)	130, 470, 935
SfaNI	GCATC	7 cut(s)	100, 147, 201, 289, 625, 691, 1016
SfoI	GGCGCC	2 cut(s)	507, 621
SgrAI	CRCCGGYG	2 cut(s)	169, 560
SinI	GGWCC	3 cut(s)	587, 762, 821
Sse9I	AATT	3 cut(s)	358, 983, 1095
SspDI	GGCGCC	2 cut(s)	505, 619
SspI	AATATT	1 cut(s)	924
SspMI	CTAG	4 cut(s)	549, 801, 945, 1152
StyI	CCWWGG	2 cut(s)	51, 833
TaaI	ACNGT	4 cut(s)	1093, 1111, 1200, 1280
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	809
TasI	AATT	3 cut(s)	358, 983, 1095
TauI	GCSGC	5 cut(s)	91, 145, 148, 202, 205
TfiI	GAWTC	7 cut(s)	26, 32, 41, 115, 241, 409, 1009
Tru1I	TTAA	8 cut(s)	176, 294, 357, 498, 678, 792, 965, 1047
Tru9I	TTAA	8 cut(s)	176, 294, 357, 498, 678, 792, 965, 1047
TscAI	CASTG	2 cut(s)	158, 958
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	3 cut(s)	683, 1147, 1256
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	4 cut(s)	420, 771, 797, 972
TspGWI	ACGGA	2 cut(s)	660, 1173
TspRI	CASTG	2 cut(s)	158, 958
VpaK11BI	GGWCC	3 cut(s)	587, 762, 821
XapI	RAATTY	1 cut(s)	983
XceI	RCATGY	1 cut(s)	874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	4 cut(s)	549, 801, 945, 1152
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.