Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

6055897 .. 6059944

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1087000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGCAATCGAACGGCTCTGATTCGTCGGTGCAGCAGCAGGAGGAGCAGCAACAGAATAATAACCAACGGCCGCAGCCGCAACAGGCTCAAGCCCAGACGACGCCGCCGCCGCCGCAGCAGCAGCAGTGGATGGGGATGCAGTACCCGGCGGCGGCGATGGTAATGCAGCACCAGATGATGCCGCCGCAGCATTACGCGACGCCTCCGCCTCCGCCGCAGCACTACATGGCGTACCACCAGTACCAGCAGCAGCAGCACGTACAACACCTCCAGCAGCAGCAGTTGGGATCTAGCGGTGAGAACAAGACCATCTGGGTGGGCGATTTGCACCATTGGATGGACGAGAATTACCTCCACACCTGCTTTGCATCCACTGGCGAGATTGCCTCCATTAAGGTTATTCGCAATAAGCAGACTCTTTTATCAGAGGGCTACGGATTCGTAGAATTTTTTTCACATGCAACAGCTGAGAAAGTTCTACAGAACTACGCTGGCATTCTAATGCCCAACACAGAGCAGCCCTTCCGTCTGAACTGGGCTACATTTAGCACGGGTGATAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTATTGTACGAAACTTTTTCTAGTAAATATCCATCTGTTAAAGCTGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGATACGGTTTTGTGAGGTTTGGAGACGAGAATGAAAGGTCACAGGCTATGACTGAAATGAATGGTAGCTTTTGTTCCAGCAGGCCTATGCGCATCGGGGCCGCAACTCCTAGGAAATCATCTGCGTATCAGCAACAATACTCTTCACAAGGGGGTTATGTTTCAAATGGTACACCAACCCAAGGATTCCAATCTGATGGAGATTCTACGAACACAACAATATTTGTTGGGGGGCTTGATCCTAATGTTACTGATGAAGATCTCAGGCAGCCCTTCTCTCAGTATGGTGAGATAGTTTCCGTTAAAATACCAGTTGGAAAAGGATGTGGATTTGTACAATTTGCTAACAGAAATAACGCCGAGGAGGCATTGCCGAAACTGAATGGCACAGTAATTGGCAAGCAAACAGTCCGCCTTTCATGGGGTCGCAATCCAGCAAATAAGCAGTTCAGATCGGATTTTGGCAACCAATGGGGAGGTGCCTCCTACTATGGAGGACCTGTTTATGAAGGTTACGGTTATGCTCTACCACCACATCATGACCCAAGCATGTATGCTGCAGCTGCGGCCGCATATGGAGCTTATCCGGTGTATGGCACCCACCAACAACAAGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

444

Amino Acids

49.1

Weight (kDa)

6.1

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	104 - 171	2e-11	RNA recognition motif
RRM_1	PF00076	197 - 267	3.8e-16	RNA recognition motif
RRM_1	PF00076	311 - 374	2.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc16I	TGCGCA	1 cut(s)	803
Acc36I	ACCTGC	1 cut(s)	368
AccB1I	GGYRCC	2 cut(s)	1190, 1307
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccII	CGCG	1 cut(s)	197
AclWI	GGATC	2 cut(s)	295, 944
AcoI	YGGCCR	3 cut(s)	68, 700, 1278
AcsI	RAATTY	1 cut(s)	446
AcyI	GRCGYC	2 cut(s)	101, 200
AfaI	GTAC	7 cut(s)	143, 233, 242, 261, 635, 883, 1047
AfiI	CCNNNNNNNGG	6 cut(s)	151, 337, 709, 893, 1132, 1304
AgsI	TTSAA	2 cut(s)	708, 876
AluBI	AGCT	6 cut(s)	467, 608, 671, 780, 1274, 1292
AluI	AGCT	6 cut(s)	467, 608, 671, 780, 1274, 1292
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	2 cut(s)	295, 944
AoxI	GGCC	5 cut(s)	68, 700, 794, 810, 1278
ApoI	RAATTY	1 cut(s)	446
AspA2I	CCTAGG	1 cut(s)	821
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	2 cut(s)	810, 1208
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	308, 566, 1010
AvaII	GGWCC	1 cut(s)	1208
AvrII	CCTAGG	1 cut(s)	821
BanI	GGYRCC	2 cut(s)	1190, 1307
BccI	CCATC	6 cut(s)	124, 151, 317, 331, 667, 902
BceAI	ACGGC	3 cut(s)	28, 83, 687
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	3 cut(s)	291, 648, 822
BfmI	CTRYAG	3 cut(s)	479, 609, 1269
BfuAI	ACCTGC	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	970
BlnI	CCTAGG	1 cut(s)	821
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	1208
BmgT120I	GGNCC	2 cut(s)	810, 1208
BmiI	GGNNCC	3 cut(s)	811, 1192, 1309
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	5 cut(s)	126, 168, 377, 679, 813
BmuI	ACTGGG	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	2 cut(s)	901, 969
BsaHI	GRCGYC	2 cut(s)	101, 200
BsaJI	CCNNGG	3 cut(s)	821, 892, 1071
BsaWI	WCCGGW	1 cut(s)	1297
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 1197, 1227
Bsc4I	CCNNNNNNNGG	6 cut(s)	151, 337, 709, 893, 1132, 1304
Bse1I	ACTGG	5 cut(s)	238, 379, 539, 703, 1022
Bse3DI	GCAATG	1 cut(s)	1079
Bse8I	GATNNNNATC	2 cut(s)	901, 969
BseDI	CCNNGG	3 cut(s)	821, 892, 1071
BseGI	GGATG	5 cut(s)	135, 141, 342, 368, 1040
BseJI	GATNNNNATC	2 cut(s)	901, 969
BseLI	CCNNNNNNNGG	6 cut(s)	151, 337, 709, 893, 1132, 1304
BseMI	GCAATG	1 cut(s)	1079
BseMII	CTCAG	3 cut(s)	459, 988, 1004
BseNI	ACTGG	5 cut(s)	238, 379, 539, 703, 1022
BseRI	GAGGAG	2 cut(s)	56, 1088
BseX3I	CGGCCG	2 cut(s)	68, 1278
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	2 cut(s)	71, 1281
BshFI	GGCC	5 cut(s)	70, 702, 796, 812, 1280
BshNI	GGYRCC	2 cut(s)	1190, 1307
BsiEI	CGRYCG	2 cut(s)	71, 1281
BsiSI	CCGG	2 cut(s)	146, 1298
BslI	CCNNNNNNNGG	6 cut(s)	151, 337, 709, 893, 1132, 1304
BsmAI	GTCTC	1 cut(s)	729
BsmBI	CGTCTC	1 cut(s)	729
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	5 cut(s)	70, 702, 796, 812, 1280
Bsp1407I	TGTACA	1 cut(s)	1045
Bsp143I	GATC	5 cut(s)	287, 580, 949, 970, 1163
BspANI	GGCC	5 cut(s)	70, 702, 796, 812, 1280
BspCNI	CTCAG	3 cut(s)	460, 987, 1003
BspFNI	CGCG	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	1249
BspLI	GGNNCC	3 cut(s)	811, 1192, 1309
BspMAI	CTGCAG	2 cut(s)	613, 1273
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	295, 944
BspT107I	GGYRCC	2 cut(s)	1190, 1307
BsrDI	GCAATG	1 cut(s)	1079
BsrGI	TGTACA	1 cut(s)	1045
BsrI	ACTGG	5 cut(s)	238, 379, 539, 703, 1022
BssECI	CCNNGG	3 cut(s)	821, 892, 1071
BssMI	GATC	5 cut(s)	287, 580, 949, 970, 1163
BssNI	GRCGYC	2 cut(s)	101, 200
BssT1I	CCWWGG	2 cut(s)	821, 892
Bst4CI	ACNGT	4 cut(s)	719, 1102, 1120, 1229
Bst6I	CTCTTC	1 cut(s)	859
BstACI	GRCGYC	2 cut(s)	101, 200
BstAUI	TGTACA	1 cut(s)	1045
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	493, 794, 1112
BstDEI	CTNAG	3 cut(s)	468, 974, 990
BstF5I	GGATG	5 cut(s)	135, 141, 342, 368, 1040
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	5 cut(s)	290, 583, 952, 973, 1166
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	5 cut(s)	287, 580, 949, 970, 1163
BstMCI	CGRYCG	2 cut(s)	71, 1281
BstNSI	RCATGY	2 cut(s)	461, 1264
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	3 cut(s)	479, 609, 1269
BstUI	CGCG	1 cut(s)	197
BstX2I	RGATCY	2 cut(s)	287, 970
BstXI	CCANNNNNNTGG	2 cut(s)	316, 908
BstYI	RGATCY	2 cut(s)	287, 970
BstZI	CGGCCG	2 cut(s)	68, 1278
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	5 cut(s)	70, 702, 796, 812, 1280
BtgZI	GCGATG	1 cut(s)	170
BtsCI	GGATG	5 cut(s)	135, 141, 342, 368, 1040
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 372
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	3 cut(s)	493, 794, 1112
CciI	TCATGA	1 cut(s)	1249
CciNI	GCGGCCGC	1 cut(s)	1278
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	2 cut(s)	810, 1208
CseI	GACGC	2 cut(s)	109, 208
Csp6I	GTAC	7 cut(s)	142, 232, 241, 260, 634, 882, 1046
CviAII	CATG	5 cut(s)	226, 458, 1131, 1250, 1261
CviQI	GTAC	7 cut(s)	142, 232, 241, 260, 634, 882, 1046
DdeI	CTNAG	3 cut(s)	468, 974, 990
DpnI	GATC	5 cut(s)	289, 582, 951, 972, 1165
DpnII	GATC	5 cut(s)	287, 580, 949, 970, 1163
EaeI	YGGCCR	3 cut(s)	68, 700, 1278
EagI	CGGCCG	2 cut(s)	68, 1278
Eam1104I	CTCTTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	859
EciI	GGCGGA	3 cut(s)	195, 201, 1112
EclXI	CGGCCG	2 cut(s)	68, 1278
Eco130I	CCWWGG	2 cut(s)	821, 892
Eco147I	AGGCCT	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	1208
Eco52I	CGGCCG	2 cut(s)	68, 1278
EcoO109I	RGGNCCY	1 cut(s)	1208
EcoT14I	CCWWGG	2 cut(s)	821, 892
ErhI	CCWWGG	2 cut(s)	821, 892
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	5 cut(s)	229, 461, 1134, 1253, 1264
FatI	CATG	5 cut(s)	225, 457, 1130, 1249, 1260
FauNDI	CATATG	1 cut(s)	1285
FokI	GGATG	5 cut(s)	142, 148, 349, 355, 1047
FspAI	RTGCGCAY	1 cut(s)	803
FspBI	CTAG	3 cut(s)	291, 648, 822
FspI	TGCGCA	1 cut(s)	803
GlaI	GCGC	1 cut(s)	803
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	5 cut(s)	70, 702, 796, 812, 1280
HapII	CCGG	2 cut(s)	146, 1298
HgaI	GACGC	2 cut(s)	109, 208
HhaI	GCGC	1 cut(s)	804
Hin1I	GRCGYC	2 cut(s)	101, 200
Hin1II	CATG	5 cut(s)	229, 461, 1134, 1253, 1264
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HinfI	GANTC	5 cut(s)	20, 415, 438, 897, 914
HpaII	CCGG	2 cut(s)	146, 1298
HphI	GGTGA	3 cut(s)	308, 566, 1010
Hpy166II	GTNNAC	1 cut(s)	884
Hpy188I	TCNGA	7 cut(s)	19, 427, 531, 568, 907, 1163, 1168
Hpy188III	TCNNGA	2 cut(s)	578, 1250
Hpy8I	GTNNAC	1 cut(s)	884
Hpy99I	CGWCG	3 cut(s)	28, 103, 202
HpyAV	CCTTC	3 cut(s)	532, 994, 1214
HpyCH4III	ACNGT	4 cut(s)	719, 1102, 1120, 1229
HpyCH4IV	ACGT	1 cut(s)	258
HpyF3I	CTNAG	3 cut(s)	468, 974, 990
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	2 cut(s)	101, 200
Hsp92II	CATG	5 cut(s)	229, 461, 1134, 1253, 1264
HspAI	GCGC	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	287, 580, 949, 970, 1163
LmnI	GCTCC	3 cut(s)	43, 580, 1289
LweI	GCATC	5 cut(s)	126, 168, 377, 679, 813
MaeI	CTAG	3 cut(s)	291, 648, 822
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	616, 750, 958, 1223
MalI	GATC	5 cut(s)	289, 582, 951, 972, 1165
MboI	GATC	5 cut(s)	287, 580, 949, 970, 1163
MboII	GAAGA	2 cut(s)	846, 980
MflI	RGATCY	2 cut(s)	287, 970
MluCI	AATT	4 cut(s)	346, 446, 1049, 1104
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	1006
MseI	TTAA	3 cut(s)	393, 666, 1014
MslI	CAYNNNNRTG	2 cut(s)	314, 500
MspA1I	CMGCKG	2 cut(s)	467, 1274
MspI	CCGG	2 cut(s)	146, 1298
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	495
MvnI	CGCG	1 cut(s)	197
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	1285
NdeII	GATC	5 cut(s)	287, 580, 949, 970, 1163
NlaIII	CATG	5 cut(s)	229, 461, 1134, 1253, 1264
NlaIV	GGNNCC	3 cut(s)	811, 1192, 1309
NmeAIII	GCCGAG	1 cut(s)	1096
NmuCI	GTSAC	1 cut(s)	750
NotI	GCGGCCGC	1 cut(s)	1278
NsbI	TGCGCA	1 cut(s)	803
NspI	RCATGY	2 cut(s)	461, 1264
PagI	TCATGA	1 cut(s)	1249
PaqCI	CACCTGC	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	796
PctI	GAATGC	1 cut(s)	495
PfeI	GAWTC	4 cut(s)	20, 438, 897, 914
PflMI	CCANNNNNTGG	1 cut(s)	337
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	1208
Psp5II	RGGWCCY	1 cut(s)	1208
PspN4I	GGNNCC	3 cut(s)	811, 1192, 1309
PspPI	GGNCC	2 cut(s)	810, 1208
PspPPI	RGGWCCY	1 cut(s)	1208
PsrI	GAACNNNNNNTAC	2 cut(s)	769, 801
PstI	CTGCAG	2 cut(s)	613, 1273
PsuI	RGATCY	2 cut(s)	287, 970
PvuII	CAGCTG	2 cut(s)	467, 1274
RsaI	GTAC	7 cut(s)	143, 233, 242, 261, 635, 883, 1047
RsaNI	GTAC	7 cut(s)	142, 232, 241, 260, 634, 882, 1046
RseI	CAYNNNNRTG	2 cut(s)	314, 500
SaqAI	TTAA	3 cut(s)	393, 666, 1014
Sau3AI	GATC	5 cut(s)	287, 580, 949, 970, 1163
Sau96I	GGNCC	2 cut(s)	810, 1208
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	1 cut(s)	146
SfaNI	GCATC	5 cut(s)	126, 168, 377, 679, 813
SfcI	CTRYAG	3 cut(s)	479, 609, 1269
SinI	GGWCC	1 cut(s)	1208
SmiMI	CAYNNNNRTG	2 cut(s)	314, 500
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	4 cut(s)	346, 446, 1049, 1104
SseBI	AGGCCT	1 cut(s)	796
SspI	AATATT	1 cut(s)	933
SspMI	CTAG	3 cut(s)	291, 648, 822
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	821, 892
TaaI	ACNGT	4 cut(s)	719, 1102, 1120, 1229
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	8
TasI	AATT	4 cut(s)	346, 446, 1049, 1104
TatI	WGTACW	1 cut(s)	1045
TfiI	GAWTC	4 cut(s)	20, 438, 897, 914
Tru1I	TTAA	3 cut(s)	393, 666, 1014
Tru9I	TTAA	3 cut(s)	393, 666, 1014
TscAI	CASTG	2 cut(s)	131, 379
TseFI	GTSAC	1 cut(s)	750
Tsp45I	GTSAC	1 cut(s)	750
TspDTI	ATGAA	5 cut(s)	759, 785, 981, 1119, 1233
TspGWI	ACGGA	3 cut(s)	450, 515, 1000
TspRI	CASTG	2 cut(s)	131, 379
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	1208
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	2 cut(s)	461, 1264
XmaJI	CCTAGG	1 cut(s)	821
XspI	CTAG	3 cut(s)	291, 648, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.