Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Reverse (-)

64550590 .. 64554820

Gene Structure 4231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCAATCCAACGGCTCGGATTCCTCCCTGCAGCAACAGGACCCAAGTACTCAGCCACGTCAGCAGCAGCCGCCGCCGCCGCCGCCGCCGCAGCAGTGGATGGCGATGCAGTACCCAGCGGCCGCGATGGTAATGCAGCACCAAATGATGCCACCGCAGCATTACGCGCCTCCGCCGCAACACTACATGGCGTACCACCAGTACCAGCAGCACCCGCAGCAGCACGTGCAGCAACAGCAGCAGCAGCAGATGGGATCTGGCGGCGGCGGCAGCGGCGAGAACAAGACCATCTGGGTCGGCGATTTGCACCACTGGATGGACGAGAATTACCTCCACAGCTGCTTCGCTTCCGCCGGCGAGATTGCCTCCATCAAGGTTATCCGCAATAAGCAGACTCTTTTATCAGAGGGCTACGGATTTGTAGAATTCTTTTCACATGCTACAGCTGAGAAAGTCCTACAGAGCTATGCTGCAATTTTAATGCCTAACACGGAACAGCCCTTCCGTCTGAACTGGGCAACATTTAGTACGGGTGACAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGACTTAGCAGCAGATGTTACAGATAGTTTATTGCACGAAACTTTTTCTAGTAAATATCCATCTGTTAAAGCCGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTTGTGAGGTTTGGCGACGAGAATGAAAGGTCACAGGCTATGACCGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGATATCAGCAGCAAGGGGGGTATGCTCTGAATGGTACACCAGCCCAAGGGTTCCAATCTGATGGAGATGCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCCAATGTTACTGATGAAGATCTCAGGCAGCCTTTCTCTCAGTATGGCGAGATCGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTACAATTTGCCAATAGAAATAATGCTGAGGAGGCATTGCCGAAACTGAATGGCTCAGTAATTGGCAAGCAAACAGTCCGACTTTCATGGGGTCGCAATCCAGCAAATAAGCAGGCATTCTTTCTTTCTTATAACCTTCTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

385

Amino Acids

42.5

Weight (kDa)

6.41

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	97 - 158	1.1e-10	RNA recognition motif
RRM_1	PF00076	190 - 259	1.2e-15	RNA recognition motif
RRM_1	PF00076	300 - 363	4.6e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1143
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccII	CGCG	2 cut(s)	125, 167
AclWI	GGATC	2 cut(s)	262, 911
AcoI	YGGCCR	2 cut(s)	120, 679
AcsI	RAATTY	1 cut(s)	425
AcvI	CACGTG	1 cut(s)	226
AfaI	GTAC	7 cut(s)	49, 113, 194, 203, 529, 850, 1014
AfiI	CCNNNNNNNGG	3 cut(s)	316, 688, 860
AgsI	TTSAA	1 cut(s)	687
AjiI	CACGTC	1 cut(s)	59
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AluBI	AGCT	3 cut(s)	339, 446, 465
AluI	AGCT	3 cut(s)	339, 446, 465
Alw26I	GTCTC	2 cut(s)	573, 979
AlwI	GGATC	2 cut(s)	262, 911
AoxI	GGCC	3 cut(s)	120, 679, 773
ApoI	RAATTY	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	800
BbrPI	CACGTG	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	1038
BccI	CCATC	8 cut(s)	94, 121, 244, 296, 310, 377, 646, 869
BceAI	ACGGC	2 cut(s)	28, 666
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BcoDI	GTCTC	2 cut(s)	573, 979
BfaI	CTAG	3 cut(s)	627, 768, 801
BfmI	CTRYAG	3 cut(s)	29, 441, 458
BglII	AGATCT	1 cut(s)	937
BlnI	CCTAGG	1 cut(s)	800
BmcAI	AGTACT	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	42, 866
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	4 cut(s)	96, 138, 658, 871
BmuI	ACTGGG	1 cut(s)	523
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 959, 991
Bpu10I	CCTNAGC	1 cut(s)	1038
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	936
BsaJI	CCNNGG	2 cut(s)	800, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 688, 860
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	5 cut(s)	199, 317, 518, 682, 989
Bse3DI	GCAATG	1 cut(s)	1046
Bse8I	GATNNNNATC	1 cut(s)	936
BseDI	CCNNGG	2 cut(s)	800, 859
BseGI	GGATG	3 cut(s)	105, 321, 1007
BseJI	GATNNNNATC	1 cut(s)	936
BseLI	CCNNNNNNNGG	3 cut(s)	316, 688, 860
BseMI	GCAATG	1 cut(s)	1046
BseMII	CTCAG	6 cut(s)	65, 438, 955, 971, 1029, 1080
BseNI	ACTGG	5 cut(s)	199, 317, 518, 682, 989
BseRI	GAGGAG	1 cut(s)	1055
BseX3I	CGGCCG	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	2 cut(s)	125, 167
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	122, 681, 775
BsiEI	CGRYCG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	3 cut(s)	316, 688, 860
BsmAI	GTCTC	2 cut(s)	573, 979
BsmBI	CGTCTC	1 cut(s)	979
BsmI	GAATGC	1 cut(s)	1127
BsnI	GGCC	3 cut(s)	122, 681, 775
Bsp1407I	TGTACA	1 cut(s)	1012
Bsp143I	GATC	5 cut(s)	254, 559, 916, 937, 969
BspANI	GGCC	3 cut(s)	122, 681, 775
BspCNI	CTCAG	6 cut(s)	64, 439, 954, 970, 1030, 1079
BspFNI	CGCG	2 cut(s)	125, 167
BspLI	GGNNCC	2 cut(s)	42, 866
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	2 cut(s)	262, 911
BsrDI	GCAATG	1 cut(s)	1046
BsrFI	RCCGGY	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	1012
BsrI	ACTGG	5 cut(s)	199, 317, 518, 682, 989
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	800, 859
BssMI	GATC	5 cut(s)	254, 559, 916, 937, 969
BssT1I	CCWWGG	2 cut(s)	800, 859
Bst4CI	ACNGT	1 cut(s)	1087
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	1012
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	4 cut(s)	355, 773, 1079, 1125
BstDEI	CTNAG	7 cut(s)	51, 447, 583, 941, 957, 1038, 1066
BstF5I	GGATG	3 cut(s)	105, 321, 1007
BstFNI	CGCG	2 cut(s)	125, 167
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	5 cut(s)	257, 562, 919, 940, 972
BstMAI	GTCTC	2 cut(s)	573, 979
BstMBI	GATC	5 cut(s)	254, 559, 916, 937, 969
BstMCI	CGRYCG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	440
BstSFI	CTRYAG	3 cut(s)	29, 441, 458
BstUI	CGCG	2 cut(s)	125, 167
BstX2I	RGATCY	2 cut(s)	254, 937
BstXI	CCANNNNNNTGG	1 cut(s)	875
BstYI	RGATCY	2 cut(s)	254, 937
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	122, 681, 775
BtgZI	GCGATG	2 cut(s)	119, 140
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	105, 321, 1007
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 310
Cac8I	GCNNGC	4 cut(s)	355, 773, 1079, 1125
CciNI	GCGGCCGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	7 cut(s)	48, 112, 193, 202, 528, 849, 1013
CviAII	CATG	3 cut(s)	187, 437, 1098
CviQI	GTAC	7 cut(s)	48, 112, 193, 202, 528, 849, 1013
DdeI	CTNAG	7 cut(s)	51, 447, 583, 941, 957, 1038, 1066
DpnI	GATC	5 cut(s)	256, 561, 918, 939, 971
DpnII	GATC	5 cut(s)	254, 559, 916, 937, 969
EaeI	YGGCCR	2 cut(s)	120, 679
EagI	CGGCCG	1 cut(s)	120
EciI	GGCGGA	2 cut(s)	162, 340
EclXI	CGGCCG	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	800, 859
Eco147I	AGGCCT	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	818
Eco47I	GGWCC	1 cut(s)	40
Eco52I	CGGCCG	1 cut(s)	120
Eco72I	CACGTG	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	425
EcoRV	GATATC	1 cut(s)	818
EcoT14I	CCWWGG	2 cut(s)	800, 859
ErhI	CCWWGG	2 cut(s)	800, 859
Esp3I	CGTCTC	1 cut(s)	979
FaeI	CATG	3 cut(s)	190, 440, 1101
FatI	CATG	3 cut(s)	186, 436, 1097
FauI	CCCGC	1 cut(s)	222
FokI	GGATG	3 cut(s)	112, 328, 1014
FspBI	CTAG	3 cut(s)	627, 768, 801
GlaI	GCGC	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	122, 681, 775
HapII	CCGG	1 cut(s)	354
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	3 cut(s)	190, 440, 1101
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	20, 394
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	851
Hpy188I	TCNGA	7 cut(s)	19, 406, 510, 547, 843, 874, 1091
Hpy188III	TCNNGA	3 cut(s)	557, 813, 1155
Hpy8I	GTNNAC	1 cut(s)	851
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	2 cut(s)	511, 1157
HpyCH4III	ACNGT	1 cut(s)	1087
HpyCH4IV	ACGT	2 cut(s)	58, 225
HpyCH4V	TGCA	9 cut(s)	4, 31, 109, 136, 229, 307, 473, 613, 794
HpyF3I	CTNAG	7 cut(s)	51, 447, 583, 941, 957, 1038, 1066
HpySE526I	ACGT	2 cut(s)	58, 225
Hsp92II	CATG	3 cut(s)	190, 440, 1101
HspAI	GCGC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	254, 559, 916, 937, 969
LmnI	GCTCC	1 cut(s)	559
LweI	GCATC	4 cut(s)	96, 138, 658, 871
MaeI	CTAG	3 cut(s)	627, 768, 801
MaeII	ACGT	2 cut(s)	58, 225
MaeIII	GTNAC	4 cut(s)	533, 595, 729, 925
MalI	GATC	5 cut(s)	256, 561, 918, 939, 971
MboI	GATC	5 cut(s)	254, 559, 916, 937, 969
MboII	GAAGA	1 cut(s)	947
MflI	RGATCY	2 cut(s)	254, 937
MluCI	AATT	5 cut(s)	325, 425, 474, 1016, 1071
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	4 cut(s)	33, 886, 973, 1114
MnlI	CCTC	9 cut(s)	34, 180, 341, 376, 400, 699, 902, 1033, 1036
MreI	CGCCGGCG	1 cut(s)	353
MroNI	GCCGGC	1 cut(s)	353
MseI	TTAA	3 cut(s)	479, 645, 981
MspA1I	CMGCKG	4 cut(s)	119, 273, 339, 446
MspI	CCGG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	1127
MvnI	CGCG	2 cut(s)	125, 167
NaeI	GCCGGC	1 cut(s)	355
NdeII	GATC	5 cut(s)	254, 559, 916, 937, 969
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	190, 440, 1101
NlaIV	GGNNCC	2 cut(s)	42, 866
NmuCI	GTSAC	2 cut(s)	533, 729
NotI	GCGGCCGC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	775
PctI	GAATGC	1 cut(s)	1127
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	316
PleI	GAGTC	1 cut(s)	388
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	40
PsiI	TTATAA	1 cut(s)	1143
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	42, 866
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	254, 937
PvuII	CAGCTG	2 cut(s)	339, 446
RsaI	GTAC	7 cut(s)	49, 113, 194, 203, 529, 850, 1014
RsaNI	GTAC	7 cut(s)	48, 112, 193, 202, 528, 849, 1013
SaqAI	TTAA	3 cut(s)	479, 645, 981
Sau3AI	GATC	5 cut(s)	254, 559, 916, 937, 969
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	1 cut(s)	388
SfaNI	GCATC	4 cut(s)	96, 138, 658, 871
SfcI	CTRYAG	3 cut(s)	29, 441, 458
SgrAI	CRCCGGYG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	5 cut(s)	325, 425, 474, 1016, 1071
SseBI	AGGCCT	1 cut(s)	775
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	3 cut(s)	627, 768, 801
StuI	AGGCCT	1 cut(s)	775
StyI	CCWWGG	2 cut(s)	800, 859
TaaI	ACNGT	1 cut(s)	1087
TaiI	ACGT	2 cut(s)	61, 228
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	5 cut(s)	325, 425, 474, 1016, 1071
TatI	WGTACW	2 cut(s)	47, 1012
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	479, 645, 981
Tru9I	TTAA	3 cut(s)	479, 645, 981
TscAI	CASTG	2 cut(s)	101, 317
TseFI	GTSAC	2 cut(s)	533, 729
Tsp45I	GTSAC	2 cut(s)	533, 729
TspDTI	ATGAA	4 cut(s)	738, 764, 948, 1086
TspGWI	ACGGA	3 cut(s)	429, 494, 506
TspRI	CASTG	2 cut(s)	101, 317
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	440
XmaJI	CCTAGG	1 cut(s)	800
XspI	CTAG	3 cut(s)	627, 768, 801
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.