Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000031.1

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6081

Gene Structure 6081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000031.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1417 bp

atgcaatccaacggctcggattcctccctgcagcagcagcaacaggaccaaagtactcagccacgtccgccgccgccgccgcagcagtggatggcgatgcagtacccagcggccgcgatggtaatgcagcaccaaatgatgccaccgcagcattacgcgcctccgccgcaacactacatggcgtaccaccagtaccagcagcacccgcagcagcacgtgcagcaacagcagcagcagatgggatctggcggcagcggcgagaacaagaccatctgggtcggcgatttgcaccactggatggacgagaattacctccacagctgcttcgcttccgccggcgagattgcctccatcaaggttatccgcaataagcagactcttttatcagagggctacggatttgtagaattcttttcacatgctacagctgagaaagtcctacagagctatgctgcaattttaatgcctaacacggaacagcccttccgtctgaactgggcaacatttagtacgggtgacaagcgttcagataacgctcctgatctttccatttttgtaggagacttagcagcagatgttacagatagtttattgcacgaaactttttctagtaaatatccatctgttaaagccgcaaaagttgtctttgatgccaatactggccgttcaaagggctatggttttgtgaggtttggcgacgagaatgaaaggtcacaggctatgactgaaatgaatggtgtttattgttctagcaggcctatgcgtattggtgctgcaactcctaggaaatcatctggatatcagcagcaaggggggtatgctctgaatggtacaccagcccaagggttccaatctgatggagatgctacaaacacaacaatatttgttggagggcttgatcccaatgttactgatgaagatctcaggcagcctttctctcagtatggcgagattgtctctgttaaaataccagttggaaaaggatgtgggtttgtacaatttgccaatagaaataatgctgaggaggcattgccgaaactgaatggctcagtaattggcaagcaaacagtccgactttcatggggtcgcaatccagcaaataagcagtttagaactgatttcggcaaccagtgggcaggagcggcgtactatggaggacctgtttatgatggttatggttatgctctgccaccacaacatgacccaagcatgtatgctgcagctgctgcatatggcgcttaccctgtttacggtacccaccaacaacaaccgccgaaagtcgtcgtcaccagagagcgcggcaagaatgccaaactcatcacctctctggcgaagcagggaatcagctgtttggagcttcccctgatccagcatacacgggggcctgatcgagataggctttctactgtattgactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

472

Amino Acids

52.06

Weight (kDa)

7.24

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1253
AccB1I	GGYRCC	1 cut(s)	1253
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccBSI	CCGCTC	1 cut(s)	1142
AccII	CGCG	3 cut(s)	116, 158, 1299
AclWI	GGATC	3 cut(s)	250, 893, 1360
AcoI	YGGCCR	2 cut(s)	111, 661
AcsI	RAATTY	1 cut(s)	407
AcvI	CACGTG	1 cut(s)	217
AfaI	GTAC	9 cut(s)	55, 104, 185, 194, 511, 832, 996, 1148, 1255
AfiI	CCNNNNNNNGG	4 cut(s)	298, 670, 842, 1250
AgsI	TTSAA	1 cut(s)	669
AjiI	CACGTC	1 cut(s)	65
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	6 cut(s)	321, 428, 447, 1223, 1347, 1357
AluI	AGCT	6 cut(s)	321, 428, 447, 1223, 1347, 1357
Alw26I	GTCTC	2 cut(s)	555, 961
AlwI	GGATC	3 cut(s)	250, 893, 1360
AlwNI	CAGNNNCTG	1 cut(s)	1226
AoxI	GGCC	4 cut(s)	111, 661, 755, 1382
ApoI	RAATTY	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	1253
AspA2I	CCTAGG	1 cut(s)	782
AspLEI	GCGC	3 cut(s)	160, 1238, 1299
AspS9I	GGNCC	3 cut(s)	46, 1157, 1382
AsuHPI	GGTGA	3 cut(s)	527, 1279, 1312
AvaII	GGWCC	2 cut(s)	46, 1157
AvrII	CCTAGG	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	1253
BbrPI	CACGTG	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	1020
BccI	CCATC	9 cut(s)	85, 112, 232, 278, 292, 359, 628, 851, 1163
BceAI	ACGGC	2 cut(s)	28, 648
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BcoDI	GTCTC	2 cut(s)	555, 961
BfaI	CTAG	3 cut(s)	609, 750, 783
BfmI	CTRYAG	4 cut(s)	29, 423, 440, 1218
BfoI	RGCGCY	1 cut(s)	1239
BglII	AGATCT	1 cut(s)	919
BlnI	CCTAGG	1 cut(s)	782
BmcAI	AGTACT	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	46, 1157
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	46, 1157, 1382
BmiI	GGNNCC	3 cut(s)	848, 1255, 1383
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	4 cut(s)	87, 129, 640, 853
BmuI	ACTGGG	1 cut(s)	505
BplI	GAGNNNNNCTC	4 cut(s)	332, 364, 941, 973
Bpu10I	CCTNAGC	1 cut(s)	1020
BsaAI	YACGTR	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	918
BsaJI	CCNNGG	2 cut(s)	782, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	1146, 1176
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 670, 842, 1250
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	6 cut(s)	190, 299, 500, 664, 971, 1129
Bse3DI	GCAATG	1 cut(s)	1028
Bse8I	GATNNNNATC	1 cut(s)	918
BseDI	CCNNGG	2 cut(s)	782, 841
BseGI	GGATG	3 cut(s)	96, 303, 989
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	4 cut(s)	298, 670, 842, 1250
BseMI	GCAATG	1 cut(s)	1028
BseMII	CTCAG	6 cut(s)	71, 420, 937, 953, 1011, 1062
BseNI	ACTGG	6 cut(s)	190, 299, 500, 664, 971, 1129
BseRI	GAGGAG	1 cut(s)	1037
BseX3I	CGGCCG	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	3 cut(s)	116, 158, 1299
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	113, 663, 757, 1384
BshNI	GGYRCC	1 cut(s)	1253
BsiEI	CGRYCG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	336
BslI	CCNNNNNNNGG	4 cut(s)	298, 670, 842, 1250
BsmAI	GTCTC	2 cut(s)	555, 961
BsmI	GAATGC	1 cut(s)	1312
BsnI	GGCC	4 cut(s)	113, 663, 757, 1384
Bsp1407I	TGTACA	1 cut(s)	994
Bsp143I	GATC	6 cut(s)	242, 541, 898, 919, 1365, 1387
BspANI	GGCC	4 cut(s)	113, 663, 757, 1384
BspCNI	CTCAG	6 cut(s)	70, 421, 936, 952, 1012, 1061
BspFNI	CGCG	3 cut(s)	116, 158, 1299
BspLI	GGNNCC	3 cut(s)	848, 1255, 1383
BspMAI	CTGCAG	2 cut(s)	33, 1222
BspPI	GGATC	3 cut(s)	250, 893, 1360
BspT107I	GGYRCC	1 cut(s)	1253
BsrBI	CCGCTC	1 cut(s)	1142
BsrDI	GCAATG	1 cut(s)	1028
BsrFI	RCCGGY	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	994
BsrI	ACTGG	6 cut(s)	190, 299, 500, 664, 971, 1129
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	782, 841
BssMI	GATC	6 cut(s)	242, 541, 898, 919, 1365, 1387
BssT1I	CCWWGG	2 cut(s)	782, 841
Bst4CI	ACNGT	3 cut(s)	1069, 1253, 1408
BstAPI	GCANNNNNTGC	2 cut(s)	217, 1226
BstAUI	TGTACA	1 cut(s)	994
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	3 cut(s)	337, 755, 1061
BstDEI	CTNAG	7 cut(s)	57, 429, 565, 923, 939, 1020, 1048
BstF5I	GGATG	3 cut(s)	96, 303, 989
BstFNI	CGCG	3 cut(s)	116, 158, 1299
BstH2I	RGCGCY	1 cut(s)	1239
BstHHI	GCGC	3 cut(s)	160, 1238, 1299
BstKTI	GATC	6 cut(s)	245, 544, 901, 922, 1368, 1390
BstMAI	GTCTC	2 cut(s)	555, 961
BstMBI	GATC	6 cut(s)	242, 541, 898, 919, 1365, 1387
BstMCI	CGRYCG	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	422, 1213
BstSFI	CTRYAG	4 cut(s)	29, 423, 440, 1218
BstUI	CGCG	3 cut(s)	116, 158, 1299
BstX2I	RGATCY	2 cut(s)	242, 919
BstXI	CCANNNNNNTGG	1 cut(s)	857
BstYI	RGATCY	2 cut(s)	242, 919
BstZI	CGGCCG	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	113, 663, 757, 1384
BtgZI	GCGATG	2 cut(s)	110, 131
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	96, 303, 989
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	3 cut(s)	92, 292, 1136
Cac8I	GCNNGC	3 cut(s)	337, 755, 1061
CaiI	CAGNNNCTG	1 cut(s)	1226
CciNI	GCGGCCGC	1 cut(s)	111
CfoI	GCGC	3 cut(s)	160, 1238, 1299
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	3 cut(s)	46, 1157, 1382
Csp6I	GTAC	9 cut(s)	54, 103, 184, 193, 510, 831, 995, 1147, 1254
CviAII	CATG	5 cut(s)	178, 419, 1080, 1199, 1210
CviQI	GTAC	9 cut(s)	54, 103, 184, 193, 510, 831, 995, 1147, 1254
DdeI	CTNAG	7 cut(s)	57, 429, 565, 923, 939, 1020, 1048
DpnI	GATC	6 cut(s)	244, 543, 900, 921, 1367, 1389
DpnII	GATC	6 cut(s)	242, 541, 898, 919, 1365, 1387
EaeI	YGGCCR	2 cut(s)	111, 661
EagI	CGGCCG	1 cut(s)	111
EciI	GGCGGA	3 cut(s)	57, 153, 322
EclXI	CGGCCG	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	782, 841
Eco147I	AGGCCT	1 cut(s)	757
Eco32I	GATATC	1 cut(s)	800
Eco47I	GGWCC	2 cut(s)	46, 1157
Eco52I	CGGCCG	1 cut(s)	111
Eco72I	CACGTG	1 cut(s)	217
EcoO109I	RGGNCCY	2 cut(s)	1157, 1382
EcoRI	GAATTC	1 cut(s)	407
EcoRV	GATATC	1 cut(s)	800
EcoT14I	CCWWGG	2 cut(s)	782, 841
ErhI	CCWWGG	2 cut(s)	782, 841
FaeI	CATG	5 cut(s)	181, 422, 1083, 1202, 1213
FatI	CATG	5 cut(s)	177, 418, 1079, 1198, 1209
FauI	CCCGC	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	1231
FokI	GGATG	3 cut(s)	103, 310, 996
FspBI	CTAG	3 cut(s)	609, 750, 783
GlaI	GCGC	3 cut(s)	159, 1237, 1298
GsaI	CCCAGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	1239
HaeIII	GGCC	4 cut(s)	113, 663, 757, 1384
HapII	CCGG	1 cut(s)	336
HhaI	GCGC	3 cut(s)	160, 1238, 1299
Hin1II	CATG	5 cut(s)	181, 422, 1083, 1202, 1213
Hin6I	GCGC	3 cut(s)	158, 1236, 1297
HinP1I	GCGC	3 cut(s)	158, 1236, 1297
HinfI	GANTC	3 cut(s)	20, 376, 1341
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	3 cut(s)	527, 1279, 1312
Hpy166II	GTNNAC	2 cut(s)	833, 1249
Hpy188I	TCNGA	7 cut(s)	19, 388, 492, 529, 825, 856, 1073
Hpy188III	TCNNGA	3 cut(s)	539, 795, 1391
Hpy8I	GTNNAC	2 cut(s)	833, 1249
Hpy99I	CGWCG	2 cut(s)	701, 1286
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	3 cut(s)	1069, 1253, 1408
HpyCH4IV	ACGT	2 cut(s)	64, 216
HpyF3I	CTNAG	7 cut(s)	57, 429, 565, 923, 939, 1020, 1048
HpySE526I	ACGT	2 cut(s)	64, 216
Hsp92II	CATG	5 cut(s)	181, 422, 1083, 1202, 1213
HspAI	GCGC	3 cut(s)	158, 1236, 1297
KpnI	GGTACC	1 cut(s)	1257
KroI	GCCGGC	1 cut(s)	335
KroNI	GCCGGC	1 cut(s)	337
Kzo9I	GATC	6 cut(s)	242, 541, 898, 919, 1365, 1387
LmnI	GCTCC	3 cut(s)	541, 1139, 1354
LweI	GCATC	4 cut(s)	87, 129, 640, 853
MaeI	CTAG	3 cut(s)	609, 750, 783
MaeII	ACGT	2 cut(s)	64, 216
MaeIII	GTNAC	5 cut(s)	515, 577, 711, 907, 1285
MalI	GATC	6 cut(s)	244, 543, 900, 921, 1367, 1389
MbiI	CCGCTC	1 cut(s)	1142
MboI	GATC	6 cut(s)	242, 541, 898, 919, 1365, 1387
MboII	GAAGA	1 cut(s)	929
MflI	RGATCY	2 cut(s)	242, 919
MluCI	AATT	5 cut(s)	307, 407, 456, 998, 1053
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	4 cut(s)	33, 868, 955, 1096
MreI	CGCCGGCG	1 cut(s)	335
MroNI	GCCGGC	1 cut(s)	335
MseI	TTAA	3 cut(s)	461, 627, 963
MspA1I	CMGCKG	6 cut(s)	110, 255, 321, 428, 1223, 1347
MspI	CCGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	1312
MvnI	CGCG	3 cut(s)	116, 158, 1299
NaeI	GCCGGC	1 cut(s)	337
NdeI	CATATG	1 cut(s)	1231
NdeII	GATC	6 cut(s)	242, 541, 898, 919, 1365, 1387
NgoMIV	GCCGGC	1 cut(s)	335
NlaIII	CATG	5 cut(s)	181, 422, 1083, 1202, 1213
NlaIV	GGNNCC	3 cut(s)	848, 1255, 1383
NmuCI	GTSAC	3 cut(s)	515, 711, 1285
NotI	GCGGCCGC	1 cut(s)	111
NspI	RCATGY	2 cut(s)	422, 1213
PceI	AGGCCT	1 cut(s)	757
PctI	GAATGC	1 cut(s)	1312
PdiI	GCCGGC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	20, 1341
PflMI	CCANNNNNTGG	1 cut(s)	298
PleI	GAGTC	1 cut(s)	370
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	1157
Psp5II	RGGWCCY	1 cut(s)	1157
PspCI	CACGTG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	848, 1255, 1383
PspPI	GGNCC	3 cut(s)	46, 1157, 1382
PspPPI	RGGWCCY	1 cut(s)	1157
PstI	CTGCAG	2 cut(s)	33, 1222
PstNI	CAGNNNCTG	1 cut(s)	1226
PsuI	RGATCY	2 cut(s)	242, 919
PvuII	CAGCTG	4 cut(s)	321, 428, 1223, 1347
RsaI	GTAC	9 cut(s)	55, 104, 185, 194, 511, 832, 996, 1148, 1255
RsaNI	GTAC	9 cut(s)	54, 103, 184, 193, 510, 831, 995, 1147, 1254
SaqAI	TTAA	3 cut(s)	461, 627, 963
Sau3AI	GATC	6 cut(s)	242, 541, 898, 919, 1365, 1387
Sau96I	GGNCC	3 cut(s)	46, 1157, 1382
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	370
SfaNI	GCATC	4 cut(s)	87, 129, 640, 853
SfcI	CTRYAG	4 cut(s)	29, 423, 440, 1218
SgrAI	CRCCGGYG	1 cut(s)	335
SinI	GGWCC	2 cut(s)	46, 1157
Sse9I	AATT	5 cut(s)	307, 407, 456, 998, 1053
SseBI	AGGCCT	1 cut(s)	757
SspI	AATATT	1 cut(s)	882
SspMI	CTAG	3 cut(s)	609, 750, 783
StuI	AGGCCT	1 cut(s)	757
StyI	CCWWGG	2 cut(s)	782, 841
TaaI	ACNGT	3 cut(s)	1069, 1253, 1408
TaiI	ACGT	2 cut(s)	67, 219
TaqI	TCGA	1 cut(s)	1390
TasI	AATT	5 cut(s)	307, 407, 456, 998, 1053
TatI	WGTACW	2 cut(s)	53, 994
TfiI	GAWTC	2 cut(s)	20, 1341
Tru1I	TTAA	3 cut(s)	461, 627, 963
Tru9I	TTAA	3 cut(s)	461, 627, 963
TscAI	CASTG	3 cut(s)	92, 299, 1136
TseFI	GTSAC	3 cut(s)	515, 711, 1285
Tsp45I	GTSAC	3 cut(s)	515, 711, 1285
TspDTI	ATGAA	4 cut(s)	720, 746, 930, 1068
TspGWI	ACGGA	3 cut(s)	411, 476, 488
TspRI	CASTG	3 cut(s)	92, 299, 1136
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	46, 1157
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	2 cut(s)	422, 1213
XmaJI	CCTAGG	1 cut(s)	782
XspI	CTAG	3 cut(s)	609, 750, 783
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.