Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

9278054 .. 9281632

Gene Structure 3579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1106300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCAATCGAACGGCTCTGATTCGTCGGTGCAACAGCAGGAGCAGCAGCAACCGAGTAATAACCATAACCAACGGCCGCAGCAGCCGCAACAGGCCCAAGCTCAGACGCCGCCGCCGCAGCAGTGGATGGCTATGCAGTACCCGACGACGGCGATGGTAATGCAGCACCAGATGATGCCGCCGCAGCACTATGCGACTCCTCCGCCTCCGCCGCAGCACTACATGGCGTACCACCAGTACCAGCAGCAGCAGCACATACAACACCTTCAGCAGCAGCAGCAGTTGGGATCTGGCAGCGGCGAGAATAAGACCATCTGGGTCGGTGATTTGCACCATTGGATGGACGAGAATTACCTTCACACCTGCTTCGCTTCCACCGGCGAGATTGCCTCCATCAAGCTTATTCGCAATAAGCAGACTCTTTTATCCGAGGGCTACGGCTTTGTGGAATTCTTTTCACACGCAACAGCTGAGAAAGTTCTACAGAACTACGCTGGCATTCTAATGCCCAACACAGAACAGCCCTTCCGTCTGAACTGGGCTACATTTAGCACCGGTGATAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGATTTAGCTGCAGATGTTTCAGATAGTTTATTGCACGAAACTTTTTCTAGTAAATATCCATCTGTTAAAGCTGCAAAAGTCGTCTTTGATGCCAATACTGGCCGTTCAAAGGGTTACGGTTTTGTGAGGTTTGGGGACGAGAATGAAAGGTCACAGGCTATGACTGAAATGAATGGTATCTTTTGTTCCAGTAGGCCTATGCGCATCGGTGCTGCCACTCCTAGGAAATCATCTGGGTATCAACAACAATACTCTTCACAAGGGGGTTATGTTTCAAATGGTACACCAACCCAGGGATTCCAATTTGATGGAGATTCTACAAACACGACAATATTTGTCGGGGGGCTTGATCCAAATGTTACTGATGAAGATCTCAGGCAGCCCTTCTCTCAGTATGGCGAGATAGTTTCTGTTAAAATACCAGTTGGAAAAGGATGTGGATTTGTACAATTTGCCAACAGAAATAATGCTGAGGAGGCATTGCCGAAACTCAATGGCACAGTAATTGGCAAGCAAACAGTCCGACTTTCATGGGGACGCAATCCAGCAAATAAGCAGCAGTTCAGATCGGATTTTGGTAACCAATGGGGAGGTGCCGCCTACTACGGAGGACCTGTTTATGAAGGTTACGGCTATGCTCTACCACCGCATCATGACCCTAGCATGTATGCTGCAGCTTCGGCTGCATATGGAGCTTATCCGGTGTATGGCACCCACCAACAACAAGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

446

Amino Acids

49.41

Weight (kDa)

6.3

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	105 - 172	2.6e-11	RNA recognition motif
RRM_1	PF00076	198 - 268	2.4e-15	RNA recognition motif
RRM_1	PF00076	312 - 375	2.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc16I	TGCGCA	1 cut(s)	806
Acc36I	ACCTGC	1 cut(s)	371
AccB1I	GGYRCC	2 cut(s)	1196, 1313
AccB7I	CCANNNNNTGG	1 cut(s)	340
AclWI	GGATC	2 cut(s)	295, 947
AcoI	YGGCCR	2 cut(s)	74, 703
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	5 cut(s)	140, 230, 239, 886, 1050
AfiI	CCNNNNNNNGG	6 cut(s)	148, 340, 712, 825, 896, 1310
AgeI	ACCGGT	1 cut(s)	554
AgsI	TTSAA	2 cut(s)	711, 879
AjnI	CCWGG	1 cut(s)	894
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	8 cut(s)	101, 400, 470, 611, 674, 1280, 1298, 1335
AluI	AGCT	8 cut(s)	101, 400, 470, 611, 674, 1280, 1298, 1335
AlwI	GGATC	2 cut(s)	295, 947
AoxI	GGCC	4 cut(s)	74, 93, 703, 797
ApoI	RAATTY	1 cut(s)	449
AsiGI	ACCGGT	1 cut(s)	554
AspA2I	CCTAGG	1 cut(s)	824
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	2 cut(s)	94, 1214
AsuHPI	GGTGA	2 cut(s)	335, 569
AvaII	GGWCC	1 cut(s)	1214
AvrII	CCTAGG	1 cut(s)	824
BanI	GGYRCC	2 cut(s)	1196, 1313
BbvCI	CCTCAGC	1 cut(s)	1074
BccI	CCATC	7 cut(s)	121, 148, 320, 334, 401, 670, 905
BceAI	ACGGC	6 cut(s)	28, 89, 165, 454, 690, 1249
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	896
BfaI	CTAG	3 cut(s)	651, 825, 1263
BfmI	CTRYAG	3 cut(s)	482, 612, 1275
BfuAI	ACCTGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	973
BlnI	CCTAGG	1 cut(s)	824
Bme1390I	CCNGG	1 cut(s)	896
Bme18I	GGWCC	1 cut(s)	1214
BmgT120I	GGNCC	2 cut(s)	94, 1214
BmiI	GGNNCC	2 cut(s)	1198, 1315
BmrFI	CCNGG	1 cut(s)	896
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	4 cut(s)	165, 682, 816, 1261
BmuI	ACTGGG	1 cut(s)	547
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
Bpu10I	CCTNAGC	1 cut(s)	1074
BsaBI	GATNNNNATC	1 cut(s)	972
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	4 cut(s)	429, 824, 894, 895
BsaWI	WCCGGW	2 cut(s)	554, 1303
BsaXI	ACNNNNNCTCC	2 cut(s)	1203, 1233
Bsc4I	CCNNNNNNNGG	6 cut(s)	148, 340, 712, 825, 896, 1310
Bse118I	RCCGGY	2 cut(s)	377, 554
Bse1I	ACTGG	5 cut(s)	235, 542, 706, 792, 1025
Bse3DI	GCAATG	1 cut(s)	1082
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	1 cut(s)	896
BseDI	CCNNGG	4 cut(s)	429, 824, 894, 895
BseGI	GGATG	3 cut(s)	132, 345, 1043
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	6 cut(s)	148, 340, 712, 825, 896, 1310
BseMI	GCAATG	1 cut(s)	1082
BseMII	CTCAG	5 cut(s)	116, 462, 991, 1007, 1065
BseNI	ACTGG	5 cut(s)	235, 542, 706, 792, 1025
BseRI	GAGGAG	2 cut(s)	189, 1091
BseX3I	CGGCCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	4 cut(s)	76, 95, 705, 799
BshNI	GGYRCC	2 cut(s)	1196, 1313
BshTI	ACCGGT	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	378, 555, 1304
BslFI	GGGAC	2 cut(s)	752, 1152
BslI	CCNNNNNNNGG	6 cut(s)	148, 340, 712, 825, 896, 1310
BsmFI	GGGAC	2 cut(s)	752, 1152
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	4 cut(s)	76, 95, 705, 799
Bsp1407I	TGTACA	1 cut(s)	1048
Bsp143I	GATC	5 cut(s)	287, 583, 952, 973, 1169
BspANI	GGCC	4 cut(s)	76, 95, 705, 799
BspCNI	CTCAG	5 cut(s)	115, 463, 990, 1006, 1066
BspHI	TCATGA	1 cut(s)	1255
BspLI	GGNNCC	2 cut(s)	1198, 1315
BspMAI	CTGCAG	2 cut(s)	616, 1279
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	295, 947
BspT107I	GGYRCC	2 cut(s)	1196, 1313
BsrDI	GCAATG	1 cut(s)	1082
BsrFI	RCCGGY	2 cut(s)	377, 554
BsrGI	TGTACA	1 cut(s)	1048
BsrI	ACTGG	5 cut(s)	235, 542, 706, 792, 1025
BssAI	RCCGGY	2 cut(s)	377, 554
BssECI	CCNNGG	4 cut(s)	429, 824, 894, 895
BssMI	GATC	5 cut(s)	287, 583, 952, 973, 1169
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	824
Bst2UI	CCWGG	1 cut(s)	896
Bst4CI	ACNGT	3 cut(s)	722, 1105, 1123
Bst6I	CTCTTC	1 cut(s)	862
BstACI	GRCGYC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	1048
BstC8I	GCNNGC	2 cut(s)	496, 1115
BstDEI	CTNAG	5 cut(s)	102, 471, 977, 993, 1074
BstEII	GGTNACC	1 cut(s)	1181
BstF5I	GGATG	3 cut(s)	132, 345, 1043
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	5 cut(s)	290, 586, 955, 976, 1172
BstMBI	GATC	5 cut(s)	287, 583, 952, 973, 1169
BstMCI	CGRYCG	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	896
BstNSI	RCATGY	1 cut(s)	1270
BstPI	GGTNACC	1 cut(s)	1181
BstSCI	CCNGG	1 cut(s)	894
BstSFI	CTRYAG	3 cut(s)	482, 612, 1275
BstX2I	RGATCY	2 cut(s)	287, 973
BstXI	CCANNNNNNTGG	1 cut(s)	911
BstYI	RGATCY	2 cut(s)	287, 973
BstZI	CGGCCG	1 cut(s)	74
BsuRI	GGCC	4 cut(s)	76, 95, 705, 799
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	132, 345, 1043
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	496, 1115
CciI	TCATGA	1 cut(s)	1255
CfoI	GCGC	1 cut(s)	807
Cfr10I	RCCGGY	2 cut(s)	377, 554
Cfr13I	GGNCC	2 cut(s)	94, 1214
CseI	GACGC	2 cut(s)	115, 1149
Csp6I	GTAC	5 cut(s)	139, 229, 238, 885, 1049
CspAI	ACCGGT	1 cut(s)	554
CviAII	CATG	4 cut(s)	223, 1134, 1256, 1267
CviQI	GTAC	5 cut(s)	139, 229, 238, 885, 1049
DdeI	CTNAG	5 cut(s)	102, 471, 977, 993, 1074
DpnI	GATC	5 cut(s)	289, 585, 954, 975, 1171
DpnII	GATC	5 cut(s)	287, 583, 952, 973, 1169
EaeI	YGGCCR	2 cut(s)	74, 703
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
EciI	GGCGGA	2 cut(s)	192, 198
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	824
Eco147I	AGGCCT	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	1214
Eco52I	CGGCCG	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	251
Eco91I	GGTNACC	1 cut(s)	1181
EcoO109I	RGGNCCY	1 cut(s)	1214
EcoO65I	GGTNACC	1 cut(s)	1181
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	894
EcoT14I	CCWWGG	1 cut(s)	824
ErhI	CCWWGG	1 cut(s)	824
FaeI	CATG	4 cut(s)	226, 1137, 1259, 1270
FaqI	GGGAC	2 cut(s)	752, 1152
FatI	CATG	4 cut(s)	222, 1133, 1255, 1266
FauNDI	CATATG	1 cut(s)	1291
FokI	GGATG	3 cut(s)	139, 352, 1050
FspAI	RTGCGCAY	1 cut(s)	806
FspBI	CTAG	3 cut(s)	651, 825, 1263
FspI	TGCGCA	1 cut(s)	806
GlaI	GCGC	1 cut(s)	806
HaeIII	GGCC	4 cut(s)	76, 95, 705, 799
HapII	CCGG	3 cut(s)	378, 555, 1304
HgaI	GACGC	2 cut(s)	115, 1149
HhaI	GCGC	1 cut(s)	807
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	226, 1137, 1259, 1270
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	5 cut(s)	20, 196, 418, 900, 917
HpaII	CCGG	3 cut(s)	378, 555, 1304
HphI	GGTGA	2 cut(s)	335, 569
Hpy166II	GTNNAC	1 cut(s)	887
Hpy188I	TCNGA	9 cut(s)	19, 105, 430, 534, 571, 625, 1127, 1169, 1174
Hpy188III	TCNNGA	2 cut(s)	581, 1256
Hpy8I	GTNNAC	1 cut(s)	887
Hpy99I	CGWCG	3 cut(s)	28, 148, 151
HpyAV	CCTTC	5 cut(s)	275, 365, 535, 997, 1220
HpyCH4III	ACNGT	3 cut(s)	722, 1105, 1123
HpyF3I	CTNAG	5 cut(s)	102, 471, 977, 993, 1074
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	4 cut(s)	226, 1137, 1259, 1270
HspAI	GCGC	1 cut(s)	805
Kzo9I	GATC	5 cut(s)	287, 583, 952, 973, 1169
LmnI	GCTCC	3 cut(s)	40, 583, 1295
LweI	GCATC	4 cut(s)	165, 682, 816, 1261
MaeI	CTAG	3 cut(s)	651, 825, 1263
MaeIII	GTNAC	5 cut(s)	716, 753, 961, 1181, 1229
MalI	GATC	5 cut(s)	289, 585, 954, 975, 1171
MboI	GATC	5 cut(s)	287, 583, 952, 973, 1169
MboII	GAAGA	2 cut(s)	849, 983
MflI	RGATCY	2 cut(s)	287, 973
MluCI	AATT	5 cut(s)	349, 449, 905, 1052, 1107
MlyI	GAGTC	2 cut(s)	190, 412
MmeI	TCCRAC	2 cut(s)	1009, 1150
MnlI	CCTC	9 cut(s)	210, 216, 400, 424, 723, 1069, 1072, 1187, 1205
MseI	TTAA	2 cut(s)	669, 1017
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	2 cut(s)	297, 470
MspI	CCGG	3 cut(s)	378, 555, 1304
MspR9I	CCNGG	1 cut(s)	896
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	896
NdeI	CATATG	1 cut(s)	1291
NdeII	GATC	5 cut(s)	287, 583, 952, 973, 1169
NlaIII	CATG	4 cut(s)	226, 1137, 1259, 1270
NlaIV	GGNNCC	2 cut(s)	1198, 1315
NmuCI	GTSAC	1 cut(s)	753
NsbI	TGCGCA	1 cut(s)	806
NspI	RCATGY	1 cut(s)	1270
PagI	TCATGA	1 cut(s)	1255
PaqCI	CACCTGC	1 cut(s)	371
PasI	CCCWGGG	1 cut(s)	895
PceI	AGGCCT	1 cut(s)	799
PctI	GAATGC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	20, 900, 917
PflMI	CCANNNNNTGG	1 cut(s)	340
PinAI	ACCGGT	1 cut(s)	554
PleI	GAGTC	2 cut(s)	190, 412
PpsI	GAGTC	2 cut(s)	190, 412
PpuMI	RGGWCCY	1 cut(s)	1214
Psp5II	RGGWCCY	1 cut(s)	1214
Psp6I	CCWGG	1 cut(s)	894
PspEI	GGTNACC	1 cut(s)	1181
PspGI	CCWGG	1 cut(s)	894
PspN4I	GGNNCC	2 cut(s)	1198, 1315
PspPI	GGNCC	2 cut(s)	94, 1214
PspPPI	RGGWCCY	1 cut(s)	1214
PsrI	GAACNNNNNNTAC	2 cut(s)	772, 804
PstI	CTGCAG	2 cut(s)	616, 1279
PsuI	RGATCY	2 cut(s)	287, 973
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	5 cut(s)	140, 230, 239, 886, 1050
RsaNI	GTAC	5 cut(s)	139, 229, 238, 885, 1049
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	669, 1017
Sau3AI	GATC	5 cut(s)	287, 583, 952, 973, 1169
Sau96I	GGNCC	2 cut(s)	94, 1214
SchI	GAGTC	2 cut(s)	190, 412
ScrFI	CCNGG	1 cut(s)	896
SfaNI	GCATC	4 cut(s)	165, 682, 816, 1261
SfcI	CTRYAG	3 cut(s)	482, 612, 1275
SgrAI	CRCCGGYG	2 cut(s)	377, 554
SinI	GGWCC	1 cut(s)	1214
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	5 cut(s)	349, 449, 905, 1052, 1107
SseBI	AGGCCT	1 cut(s)	799
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	3 cut(s)	651, 825, 1263
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	1 cut(s)	894
StyI	CCWWGG	1 cut(s)	824
TaaI	ACNGT	3 cut(s)	722, 1105, 1123
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	349, 449, 905, 1052, 1107
TatI	WGTACW	1 cut(s)	1048
TfiI	GAWTC	3 cut(s)	20, 900, 917
Tru1I	TTAA	2 cut(s)	669, 1017
Tru9I	TTAA	2 cut(s)	669, 1017
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	753
Tsp45I	GTSAC	1 cut(s)	753
TspDTI	ATGAA	5 cut(s)	762, 788, 984, 1122, 1239
TspGWI	ACGGA	2 cut(s)	518, 1224
TspRI	CASTG	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	1214
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	1270
XmaJI	CCTAGG	1 cut(s)	824
XspI	CTAG	3 cut(s)	651, 825, 1263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.