Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Reverse (-)

50463661 .. 50464848

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0357200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGTTCTCGAGGCGACTATGATATGCATCGACAATTCAGAATGGATGCGAAACGGTGATTACTCTCCCTCCCGATTCCAAGCTCAAGCCGATGCTGTAAATCTCATCTGTGGTGTCAAAACCCAGGCCAACCCGGAAAACACAGTTGGTGTGTTGACAATGGCGGGCAAAGGGGTTCGCGTGCTGACCACACCCACCTCTGATCTTGGCAAGATTTTGACTTGCACGCATGGCCTCGAGATAGGGGGTGAGATGAACATAGCAGCTGCAATCCAGGTAGCTCAGTTGGCTCTTAAGCATCGCCAAAATAAAAACCAACAACAAAGGATTGTAGTATTTGCTGGAAGTCCTGTCAAGAATGACAAGAAGGCATTAGAAATAATTGGGAAGAAACTGAAGAAGAACAGTGTTGCTCTTGACATTGTCGATTTTGGAGGAGAAGATGATGGAAAGGCGGAGAAGCTGGAGGCCCTTGTTTCTGCTGTTAATAATAATGGCACTAGTCACATAGTCCATGTACCTCCTAGTCTCCATGCTCTCTCTGATGTTCTTTTAAGTACACCTATATTAACTGGTGATGAAGAAGGAGGAGCTGGCTTTGCAGCCACAGCCGCAGCAGCTGGTATTGGTGGTTCTTCTGGCCATGACTTTGGAATAGATCCCAATATAGATCCCGAGCTTGCTCTCGCCCTTAGAATGTCAATGGAAGAGGAAAGGGCAAGACAAGAAGCTGCTGCTGCCAAAAGAGCTGAGGAAGAAGCTGCTAGCAGACGAGGGAAAGGAGAGGAACGGCCATCCAAATCGGAGGATGTGACCATGACAGAAAGCGATGATGTTGAAATGGTTGATGAGAATGCCTTGCTAATGCAGGCTCTTGCGATGTCAATGAATAACTATGGCTCTGGTAGTTCTGCAGTTGGTGATGCTGAGATGTCAGAGGCAACTGGTGTGGATCAGGACTTGGCTGTAGCTCTTCAAATGTCCATGCAGGAAAGCGCAGGAGGGGCATCATCATCCGAGACAGTTGATGTGAGCAAGGTGTTGGAGGATCAGTCTTTTCTTTCGTCTATCCTGGAATCTCTTCCGGGAGTTGACCCCAATGATCCTTCTGTGAAAGAGTTTCTTGCATCTGTGATTAATCAGTTTGAAAAGAATGAACAAGATCCATCTAATGACGAGGACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

395

Amino Acids

41.69

Weight (kDa)

4.49

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VWA_2	PF13519	6 - 115	1.2e-32	von Willebrand factor type A domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	180
AciI	CCGC	3 cut(s)	164, 455, 612
AclWI	GGATC	6 cut(s)	653, 665, 960, 1056, 1097, 1157
AcoI	YGGCCR	2 cut(s)	640, 791
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	2 cut(s)	519, 559
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	839, 977, 1148
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	3 cut(s)	123, 273, 1071
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
Alw26I	GTCTC	2 cut(s)	533, 1013
AlwI	GGATC	6 cut(s)	653, 665, 960, 1056, 1097, 1157
AlwNI	CAGNNNCTG	1 cut(s)	620
Ama87I	CYCGRG	3 cut(s)	8, 236, 674
AoxI	GGCC	5 cut(s)	126, 232, 468, 640, 791
ApeKI	GCWGC	9 cut(s)	263, 266, 602, 614, 617, 731, 734, 737, 761
AseI	ATTAAT	1 cut(s)	1137
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspLEI	GCGC	1 cut(s)	998
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	2 cut(s)	134, 1086
AsuHPI	GGTGA	4 cut(s)	68, 260, 587, 932
AsuNHI	GCTAGC	1 cut(s)	764
AvaI	CYCGRG	3 cut(s)	8, 236, 674
BalI	TGGCCA	1 cut(s)	642
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	9 cut(s)	253, 275, 614, 626, 629, 718, 721, 724, 748
BccI	CCATC	3 cut(s)	440, 802, 1174
BceAI	ACGGC	1 cut(s)	806
BciT130I	CCWGG	3 cut(s)	125, 275, 1073
BcnI	CCSGG	2 cut(s)	134, 1086
BcoDI	GTCTC	2 cut(s)	533, 1013
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	3 cut(s)	501, 525, 765
BfmI	CTRYAG	2 cut(s)	912, 966
BfrI	CTTAAG	1 cut(s)	293
Bme1390I	CCNGG	5 cut(s)	125, 134, 275, 1073, 1086
BmeT110I	CYCGRG	3 cut(s)	8, 236, 674
BmgT120I	GGNCC	1 cut(s)	469
BmrFI	CCNGG	5 cut(s)	125, 134, 275, 1073, 1086
BmsI	GCATC	7 cut(s)	36, 36, 82, 307, 913, 1016, 1136
BmtI	GCTAGC	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	134, 1086
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 1037, 1067
Bse1I	ACTGG	2 cut(s)	577, 949
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	3 cut(s)	125, 275, 1073
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	4 cut(s)	51, 794, 814, 1013
BseJI	GATNNNNATC	1 cut(s)	26
BseMII	CTCAG	3 cut(s)	296, 741, 918
BseNI	ACTGG	2 cut(s)	577, 949
BseRI	GAGGAG	2 cut(s)	450, 603
BseXI	GCAGC	9 cut(s)	253, 275, 614, 626, 629, 718, 721, 724, 748
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	5 cut(s)	128, 234, 470, 642, 793
BsiHKCI	CYCGRG	3 cut(s)	8, 236, 674
BsiSI	CCGG	2 cut(s)	134, 1085
BsmAI	GTCTC	2 cut(s)	533, 1013
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	5 cut(s)	128, 234, 470, 642, 793
BsoBI	CYCGRG	3 cut(s)	8, 236, 674
Bsp143I	GATC	7 cut(s)	202, 658, 670, 952, 1048, 1102, 1162
BspACI	CCGC	3 cut(s)	164, 455, 612
BspANI	GGCC	5 cut(s)	128, 234, 470, 642, 793
BspCNI	CTCAG	3 cut(s)	295, 742, 919
BspFNI	CGCG	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	916
BspOI	GCTAGC	1 cut(s)	768
BspPI	GGATC	6 cut(s)	653, 665, 960, 1056, 1097, 1157
BspQI	GCTCTTC	1 cut(s)	978
BspTI	CTTAAG	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	577, 949
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	7 cut(s)	202, 658, 670, 952, 1048, 1102, 1162
Bst2UI	CCWGG	3 cut(s)	125, 275, 1073
Bst4CI	ACNGT	4 cut(s)	56, 145, 407, 1024
Bst6I	CTCTTC	3 cut(s)	702, 978, 1086
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	7 cut(s)	166, 182, 227, 595, 681, 766, 870
BstDEI	CTNAG	4 cut(s)	282, 692, 750, 927
BstF5I	GGATG	4 cut(s)	51, 794, 814, 1013
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	998
BstKTI	GATC	7 cut(s)	205, 661, 673, 955, 1051, 1105, 1165
BstMAI	GTCTC	2 cut(s)	533, 1013
BstMBI	GATC	7 cut(s)	202, 658, 670, 952, 1048, 1102, 1162
BstMWI	GCNNNNNNNGC	9 cut(s)	231, 287, 599, 608, 611, 617, 737, 746, 1004
BstNI	CCWGG	3 cut(s)	125, 275, 1073
BstSCI	CCNGG	5 cut(s)	123, 132, 273, 1071, 1084
BstSFI	CTRYAG	2 cut(s)	912, 966
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	9 cut(s)	253, 275, 614, 626, 629, 718, 721, 724, 748
BstX2I	RGATCY	3 cut(s)	658, 670, 1162
BstXI	CCANNNNNNTGG	1 cut(s)	650
BstYI	RGATCY	3 cut(s)	658, 670, 1162
BsuRI	GGCC	5 cut(s)	128, 234, 470, 642, 793
BtgZI	GCGATG	3 cut(s)	284, 843, 893
BtsCI	GGATG	4 cut(s)	51, 794, 814, 1013
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	7 cut(s)	166, 182, 227, 595, 681, 766, 870
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	1 cut(s)	998
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	518, 558
CspCI	CAANNNNNGTGG	2 cut(s)	930, 965
CviAII	CATG	6 cut(s)	230, 515, 533, 644, 817, 985
CviQI	GTAC	2 cut(s)	518, 558
DdeI	CTNAG	4 cut(s)	282, 692, 750, 927
DpnI	GATC	7 cut(s)	204, 660, 672, 954, 1050, 1104, 1164
DpnII	GATC	7 cut(s)	202, 658, 670, 952, 1048, 1102, 1162
EaeI	YGGCCR	2 cut(s)	640, 791
Eam1104I	CTCTTC	3 cut(s)	702, 978, 1086
EarI	CTCTTC	3 cut(s)	702, 978, 1086
EciI	GGCGGA	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	416
Eco88I	CYCGRG	3 cut(s)	8, 236, 674
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	3 cut(s)	123, 273, 1071
EcoT22I	ATGCAT	1 cut(s)	29
FaeI	CATG	6 cut(s)	233, 518, 536, 647, 820, 988
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FatI	CATG	6 cut(s)	229, 514, 532, 643, 816, 984
FauI	CCCGC	1 cut(s)	157
FokI	GGATG	4 cut(s)	58, 781, 821, 1000
FspBI	CTAG	3 cut(s)	501, 525, 765
GlaI	GCGC	1 cut(s)	997
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	5 cut(s)	128, 234, 470, 642, 793
HapII	CCGG	2 cut(s)	134, 1085
HhaI	GCGC	1 cut(s)	998
Hin1II	CATG	6 cut(s)	233, 518, 536, 647, 820, 988
Hin6I	GCGC	1 cut(s)	996
HinP1I	GCGC	1 cut(s)	996
HincII	GTYRAC	2 cut(s)	156, 1093
HindII	GTYRAC	2 cut(s)	156, 1093
HinfI	GANTC	2 cut(s)	75, 1076
HpaII	CCGG	2 cut(s)	134, 1085
HphI	GGTGA	4 cut(s)	68, 260, 587, 932
Hpy166II	GTNNAC	3 cut(s)	156, 560, 1093
Hpy188I	TCNGA	6 cut(s)	40, 202, 544, 805, 937, 1018
Hpy188III	TCNNGA	7 cut(s)	8, 72, 238, 355, 416, 674, 956
Hpy8I	GTNNAC	3 cut(s)	156, 560, 1093
HpyAV	CCTTC	3 cut(s)	361, 578, 1116
HpyCH4III	ACNGT	4 cut(s)	56, 145, 407, 1024
HpyCH4V	TGCA	8 cut(s)	27, 225, 269, 602, 868, 914, 988, 1127
HpyF10VI	GCNNNNNNNGC	9 cut(s)	231, 287, 599, 608, 611, 617, 737, 746, 1004
HpyF3I	CTNAG	4 cut(s)	282, 692, 750, 927
Hsp92II	CATG	6 cut(s)	233, 518, 536, 647, 820, 988
HspAI	GCGC	1 cut(s)	996
Kzo9I	GATC	7 cut(s)	202, 658, 670, 952, 1048, 1102, 1162
LguI	GCTCTTC	1 cut(s)	978
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	9 cut(s)	253, 275, 614, 626, 629, 718, 721, 724, 748
LweI	GCATC	7 cut(s)	36, 36, 82, 307, 913, 1016, 1136
MaeI	CTAG	3 cut(s)	501, 525, 765
MaeIII	GTNAC	2 cut(s)	503, 811
MalI	GATC	7 cut(s)	204, 660, 672, 954, 1050, 1104, 1164
MboI	GATC	7 cut(s)	202, 658, 670, 952, 1048, 1102, 1162
MflI	RGATCY	3 cut(s)	658, 670, 1162
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	2 cut(s)	34, 381
MluNI	TGGCCA	1 cut(s)	642
MmeI	TCCRAC	1 cut(s)	1023
Mox20I	TGGCCA	1 cut(s)	642
Mph1103I	ATGCAT	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	1080
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	5 cut(s)	294, 486, 554, 569, 1137
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	2 cut(s)	266, 620
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	2 cut(s)	134, 1085
MspR9I	CCNGG	5 cut(s)	125, 134, 275, 1073, 1086
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	3 cut(s)	125, 275, 1073
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	9 cut(s)	231, 287, 599, 608, 611, 617, 737, 746, 1004
NciI	CCSGG	2 cut(s)	134, 1086
NdeII	GATC	7 cut(s)	202, 658, 670, 952, 1048, 1102, 1162
NheI	GCTAGC	1 cut(s)	764
NlaIII	CATG	6 cut(s)	233, 518, 536, 647, 820, 988
NmuCI	GTSAC	2 cut(s)	503, 811
NsiI	ATGCAT	1 cut(s)	29
PaeR7I	CTCGAG	2 cut(s)	8, 236
PciSI	GCTCTTC	1 cut(s)	978
PctI	GAATGC	1 cut(s)	859
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	2 cut(s)	75, 1076
PflFI	GACNNNGTC	1 cut(s)	422
PfoI	TCCNGGA	2 cut(s)	1071, 1084
PshBI	ATTAAT	1 cut(s)	1137
Psp6I	CCWGG	3 cut(s)	123, 273, 1071
PspGI	CCWGG	3 cut(s)	123, 273, 1071
PspPI	GGNCC	1 cut(s)	469
PsrI	GAACNNNNNNTAC	2 cut(s)	616, 648
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	3 cut(s)	658, 670, 1162
PsyI	GACNNNGTC	1 cut(s)	422
PvuII	CAGCTG	2 cut(s)	266, 620
RsaI	GTAC	2 cut(s)	519, 559
RsaNI	GTAC	2 cut(s)	518, 558
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	5 cut(s)	294, 486, 554, 569, 1137
Sau3AI	GATC	7 cut(s)	202, 658, 670, 952, 1048, 1102, 1162
Sau96I	GGNCC	1 cut(s)	469
ScrFI	CCNGG	5 cut(s)	125, 134, 275, 1073, 1086
SfaNI	GCATC	7 cut(s)	36, 36, 82, 307, 913, 1016, 1136
SfcI	CTRYAG	2 cut(s)	912, 966
Sfr274I	CTCGAG	2 cut(s)	8, 236
SlaI	CTCGAG	2 cut(s)	8, 236
SmlI	CTYRAG	4 cut(s)	8, 84, 236, 293
SmoI	CTYRAG	4 cut(s)	8, 84, 236, 293
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	2 cut(s)	34, 381
SsiI	CCGC	3 cut(s)	164, 455, 612
SspMI	CTAG	3 cut(s)	501, 525, 765
StyD4I	CCNGG	5 cut(s)	123, 132, 273, 1071, 1084
TaaI	ACNGT	4 cut(s)	56, 145, 407, 1024
TaqI	TCGA	4 cut(s)	9, 30, 237, 426
TasI	AATT	2 cut(s)	34, 381
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	2 cut(s)	75, 1076
Tru1I	TTAA	5 cut(s)	294, 486, 554, 569, 1137
Tru9I	TTAA	5 cut(s)	294, 486, 554, 569, 1137
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	503, 811
TseI	GCWGC	9 cut(s)	263, 266, 602, 614, 617, 731, 734, 737, 761
Tsp45I	GTSAC	2 cut(s)	503, 811
TspDTI	ATGAA	4 cut(s)	269, 594, 902, 1170
TspRI	CASTG	1 cut(s)	412
Tth111I	GACNNNGTC	1 cut(s)	422
Vha464I	CTTAAG	1 cut(s)	293
VspI	ATTAAT	1 cut(s)	1137
XhoI	CTCGAG	2 cut(s)	8, 236
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	3 cut(s)	501, 525, 765
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.