Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

3946441 .. 3950163

Gene Structure 3723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCAATCCAACGGCTCGGATTCCTCCCTGCAGCAGCAGCAACAGGAGCAAAGTACTCAGCCACGTCAGCAGCCGCAGCCTCAGTCGCAGCCGCAGCCGCCGCAGCAGTGGATGGCGATGCAGTACCCAGCGGCCGCGATGGTAATGCAGCACCAAATGATGCCACCACAGCATTACGCGCCTCCGCCGCAACACTACATGGCGTACCACCAGTACCAGCAGCACCCGCAGCAGCACGTGCAGCAGCAGCAGCAGCTGGGATCTGGCGGCGGCGGCGGCGGCAGCGGAGAGAACAAGACCATCTGGGTCGGCGATTTGCACCACTGGATGGACGAGAATTACCTCCACAGCTGCTTCGCTTCCGCCGGCGAGATTGCCTCCATCAAGGTTATCCGCAATAAGCAGACTCTTTTATCAGAGGGCTATGGATTTGTAGAATTCTTTACACATGCTACAGCTGAGAAAGTCCTACAGAGCTATGCTGCAATTTTAATGCCTAACACGGAACAGCCCTTCCGTCTGAACTGGGCAACATTTAGTACGGGTGACAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGACTTAGCTGCAGATGTTACAGATAGTTTATTGCACGAAACTTTTTCTAGTAAATATCCATCTGTTAAAGCCGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTACGGATTTGTGAGGTTTGGCGACGAGAATGAAAGGTCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGATATCAGCAGCAAGGGGGGTATGCTCTGAATGGTACACCAGCCCAAGGGTTCCAATCTGATGGAGATGCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCCAATGTTACTGATGAAGATCTCAGGCAGCCTTTCTCTCAGTATGGTGAGATCGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTACAATTTGCCAATAGAAATAATGCTGAGGAGGCATTGCCGAAACTGAATGGCTCAGTAATTGGCAAGCAAACAGTCCGACTTTCATGGGGTCGCAATCCAGCAAATAAGCAGCAGTTTAGAACTGATTTCGGCAACCAGTGGGCAGGAGCGGCGTACTATGGAGGACCTGTTTATGATGGTTATGGTTATGCTCTGCCACCACAACATGACCCAAGCATGTATGCTGCAGCTGCTGCATATGGCGCTTACCCTGTTTACGGTACCCACCAACAACAAGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

436

Amino Acids

47.95

Weight (kDa)

6.22

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	101 - 162	1.5e-10	RNA recognition motif
RRM_1	PF00076	194 - 263	1.5e-15	RNA recognition motif
RRM_1	PF00076	304 - 367	5.5e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1286
AccB1I	GGYRCC	1 cut(s)	1286
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	1175
AccII	CGCG	2 cut(s)	137, 179
AclWI	GGATC	2 cut(s)	268, 923
AcoI	YGGCCR	2 cut(s)	132, 691
AcsI	RAATTY	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	238
AfaI	GTAC	9 cut(s)	55, 125, 206, 215, 541, 862, 1026, 1181, 1288
AfiI	CCNNNNNNNGG	4 cut(s)	328, 700, 872, 1283
AgsI	TTSAA	1 cut(s)	699
AjiI	CACGTC	1 cut(s)	65
AloI	GAACNNNNNNTCC	2 cut(s)	498, 530
AluBI	AGCT	7 cut(s)	256, 351, 458, 477, 599, 1256, 1308
AluI	AGCT	7 cut(s)	256, 351, 458, 477, 599, 1256, 1308
Alw26I	GTCTC	2 cut(s)	585, 991
AlwI	GGATC	2 cut(s)	268, 923
AlwNI	CAGNNNCTG	2 cut(s)	256, 1259
AoxI	GGCC	3 cut(s)	132, 691, 785
ApoI	RAATTY	1 cut(s)	437
Asp718I	GGTACC	1 cut(s)	1286
AspA2I	CCTAGG	1 cut(s)	812
AspLEI	GCGC	2 cut(s)	181, 1271
AspS9I	GGNCC	1 cut(s)	1190
AsuHPI	GGTGA	2 cut(s)	557, 989
AvaII	GGWCC	1 cut(s)	1190
AvrII	CCTAGG	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	1286
BbrPI	CACGTG	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	1050
BccI	CCATC	8 cut(s)	106, 133, 308, 322, 389, 658, 881, 1196
BceAI	ACGGC	2 cut(s)	28, 678
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcoDI	GTCTC	2 cut(s)	585, 991
BfaI	CTAG	3 cut(s)	639, 780, 813
BfmI	CTRYAG	5 cut(s)	29, 453, 470, 600, 1251
BfoI	RGCGCY	1 cut(s)	1272
BglII	AGATCT	1 cut(s)	949
BlnI	CCTAGG	1 cut(s)	812
BmcAI	AGTACT	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	1190
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	1190
BmiI	GGNNCC	2 cut(s)	878, 1288
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	4 cut(s)	108, 150, 670, 883
BmuI	ACTGGG	1 cut(s)	535
BplI	GAGNNNNNCTC	4 cut(s)	362, 394, 971, 1003
Bpu10I	CCTNAGC	1 cut(s)	1050
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	948
BsaJI	CCNNGG	2 cut(s)	812, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	1179, 1209
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 700, 872, 1283
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	6 cut(s)	211, 329, 530, 694, 1001, 1162
Bse3DI	GCAATG	1 cut(s)	1058
Bse8I	GATNNNNATC	1 cut(s)	948
BseDI	CCNNGG	2 cut(s)	812, 871
BseGI	GGATG	3 cut(s)	117, 333, 1019
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	4 cut(s)	328, 700, 872, 1283
BseMI	GCAATG	1 cut(s)	1058
BseMII	CTCAG	7 cut(s)	71, 95, 450, 967, 983, 1041, 1092
BseNI	ACTGG	6 cut(s)	211, 329, 530, 694, 1001, 1162
BseRI	GAGGAG	1 cut(s)	1067
BseX3I	CGGCCG	1 cut(s)	132
BseYI	CCCAGC	2 cut(s)	127, 256
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	137, 179
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	134, 693, 787
BshNI	GGYRCC	1 cut(s)	1286
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	4 cut(s)	328, 700, 872, 1283
BsmAI	GTCTC	2 cut(s)	585, 991
BsmBI	CGTCTC	1 cut(s)	991
BsnI	GGCC	3 cut(s)	134, 693, 787
Bsp1407I	TGTACA	1 cut(s)	1024
Bsp143I	GATC	5 cut(s)	260, 571, 928, 949, 981
BspANI	GGCC	3 cut(s)	134, 693, 787
BspCNI	CTCAG	7 cut(s)	70, 94, 451, 966, 982, 1042, 1091
BspFNI	CGCG	2 cut(s)	137, 179
BspLI	GGNNCC	2 cut(s)	878, 1288
BspMAI	CTGCAG	3 cut(s)	33, 604, 1255
BspPI	GGATC	2 cut(s)	268, 923
BspT107I	GGYRCC	1 cut(s)	1286
BsrBI	CCGCTC	1 cut(s)	1175
BsrDI	GCAATG	1 cut(s)	1058
BsrFI	RCCGGY	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	1024
BsrI	ACTGG	6 cut(s)	211, 329, 530, 694, 1001, 1162
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	812, 871
BssMI	GATC	5 cut(s)	260, 571, 928, 949, 981
BssT1I	CCWWGG	2 cut(s)	812, 871
Bst4CI	ACNGT	2 cut(s)	1099, 1286
BstAPI	GCANNNNNTGC	2 cut(s)	238, 1259
BstAUI	TGTACA	1 cut(s)	1024
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	367, 785, 1091
BstDEI	CTNAG	8 cut(s)	57, 81, 459, 595, 953, 969, 1050, 1078
BstF5I	GGATG	3 cut(s)	117, 333, 1019
BstFNI	CGCG	2 cut(s)	137, 179
BstH2I	RGCGCY	1 cut(s)	1272
BstHHI	GCGC	2 cut(s)	181, 1271
BstKTI	GATC	5 cut(s)	263, 574, 931, 952, 984
BstMAI	GTCTC	2 cut(s)	585, 991
BstMBI	GATC	5 cut(s)	260, 571, 928, 949, 981
BstMCI	CGRYCG	1 cut(s)	135
BstNSI	RCATGY	2 cut(s)	452, 1246
BstSFI	CTRYAG	5 cut(s)	29, 453, 470, 600, 1251
BstUI	CGCG	2 cut(s)	137, 179
BstX2I	RGATCY	2 cut(s)	260, 949
BstXI	CCANNNNNNTGG	1 cut(s)	887
BstYI	RGATCY	2 cut(s)	260, 949
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	134, 693, 787
BtgZI	GCGATG	2 cut(s)	131, 152
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	117, 333, 1019
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	3 cut(s)	113, 322, 1169
Cac8I	GCNNGC	3 cut(s)	367, 785, 1091
CaiI	CAGNNNCTG	2 cut(s)	256, 1259
CciNI	GCGGCCGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	181, 1271
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	1190
Csp6I	GTAC	9 cut(s)	54, 124, 205, 214, 540, 861, 1025, 1180, 1287
CviAII	CATG	5 cut(s)	199, 449, 1110, 1232, 1243
CviQI	GTAC	9 cut(s)	54, 124, 205, 214, 540, 861, 1025, 1180, 1287
DdeI	CTNAG	8 cut(s)	57, 81, 459, 595, 953, 969, 1050, 1078
DpnI	GATC	5 cut(s)	262, 573, 930, 951, 983
DpnII	GATC	5 cut(s)	260, 571, 928, 949, 981
EaeI	YGGCCR	2 cut(s)	132, 691
EagI	CGGCCG	1 cut(s)	132
EciI	GGCGGA	2 cut(s)	174, 352
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	812, 871
Eco147I	AGGCCT	1 cut(s)	787
Eco32I	GATATC	1 cut(s)	830
Eco47I	GGWCC	1 cut(s)	1190
Eco52I	CGGCCG	1 cut(s)	132
Eco72I	CACGTG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	1 cut(s)	437
EcoRV	GATATC	1 cut(s)	830
EcoT14I	CCWWGG	2 cut(s)	812, 871
ErhI	CCWWGG	2 cut(s)	812, 871
Esp3I	CGTCTC	1 cut(s)	991
FaeI	CATG	5 cut(s)	202, 452, 1113, 1235, 1246
FatI	CATG	5 cut(s)	198, 448, 1109, 1231, 1242
FauI	CCCGC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	1264
FokI	GGATG	3 cut(s)	124, 340, 1026
FspBI	CTAG	3 cut(s)	639, 780, 813
GlaI	GCGC	2 cut(s)	180, 1270
GsaI	CCCAGC	2 cut(s)	131, 260
HaeII	RGCGCY	1 cut(s)	1272
HaeIII	GGCC	3 cut(s)	134, 693, 787
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	2 cut(s)	181, 1271
Hin1II	CATG	5 cut(s)	202, 452, 1113, 1235, 1246
Hin6I	GCGC	2 cut(s)	179, 1269
HinP1I	GCGC	2 cut(s)	179, 1269
HinfI	GANTC	2 cut(s)	20, 406
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	557, 989
Hpy166II	GTNNAC	2 cut(s)	863, 1282
Hpy188I	TCNGA	7 cut(s)	19, 418, 522, 559, 855, 886, 1103
Hpy188III	TCNNGA	2 cut(s)	569, 825
Hpy8I	GTNNAC	2 cut(s)	863, 1282
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	2 cut(s)	1099, 1286
HpyCH4IV	ACGT	2 cut(s)	64, 237
HpyF3I	CTNAG	8 cut(s)	57, 81, 459, 595, 953, 969, 1050, 1078
HpySE526I	ACGT	2 cut(s)	64, 237
Hsp92II	CATG	5 cut(s)	202, 452, 1113, 1235, 1246
HspAI	GCGC	2 cut(s)	179, 1269
KpnI	GGTACC	1 cut(s)	1290
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	260, 571, 928, 949, 981
LmnI	GCTCC	3 cut(s)	46, 571, 1172
LweI	GCATC	4 cut(s)	108, 150, 670, 883
MaeI	CTAG	3 cut(s)	639, 780, 813
MaeII	ACGT	2 cut(s)	64, 237
MaeIII	GTNAC	4 cut(s)	545, 607, 741, 937
MalI	GATC	5 cut(s)	262, 573, 930, 951, 983
MbiI	CCGCTC	1 cut(s)	1175
MboI	GATC	5 cut(s)	260, 571, 928, 949, 981
MboII	GAAGA	1 cut(s)	959
MflI	RGATCY	2 cut(s)	260, 949
MluCI	AATT	5 cut(s)	337, 437, 486, 1028, 1083
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	4 cut(s)	33, 898, 985, 1126
MreI	CGCCGGCG	1 cut(s)	365
MroNI	GCCGGC	1 cut(s)	365
MseI	TTAA	3 cut(s)	491, 657, 993
MspA1I	CMGCKG	6 cut(s)	131, 256, 285, 351, 458, 1256
MspI	CCGG	1 cut(s)	366
MvnI	CGCG	2 cut(s)	137, 179
NaeI	GCCGGC	1 cut(s)	367
NdeI	CATATG	1 cut(s)	1264
NdeII	GATC	5 cut(s)	260, 571, 928, 949, 981
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	5 cut(s)	202, 452, 1113, 1235, 1246
NlaIV	GGNNCC	2 cut(s)	878, 1288
NmuCI	GTSAC	2 cut(s)	545, 741
NotI	GCGGCCGC	1 cut(s)	132
NspI	RCATGY	2 cut(s)	452, 1246
PceI	AGGCCT	1 cut(s)	787
PdiI	GCCGGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	328
PleI	GAGTC	1 cut(s)	400
PmaCI	CACGTG	1 cut(s)	238
PmlI	CACGTG	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	1190
Psp5II	RGGWCCY	1 cut(s)	1190
PspCI	CACGTG	1 cut(s)	238
PspFI	CCCAGC	2 cut(s)	127, 256
PspN4I	GGNNCC	2 cut(s)	878, 1288
PspPI	GGNCC	1 cut(s)	1190
PspPPI	RGGWCCY	1 cut(s)	1190
PstI	CTGCAG	3 cut(s)	33, 604, 1255
PstNI	CAGNNNCTG	2 cut(s)	256, 1259
PsuI	RGATCY	2 cut(s)	260, 949
PvuII	CAGCTG	4 cut(s)	256, 351, 458, 1256
RsaI	GTAC	9 cut(s)	55, 125, 206, 215, 541, 862, 1026, 1181, 1288
RsaNI	GTAC	9 cut(s)	54, 124, 205, 214, 540, 861, 1025, 1180, 1287
SaqAI	TTAA	3 cut(s)	491, 657, 993
Sau3AI	GATC	5 cut(s)	260, 571, 928, 949, 981
Sau96I	GGNCC	1 cut(s)	1190
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	400
SfaNI	GCATC	4 cut(s)	108, 150, 670, 883
SfcI	CTRYAG	5 cut(s)	29, 453, 470, 600, 1251
SgrAI	CRCCGGYG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	1190
Sse9I	AATT	5 cut(s)	337, 437, 486, 1028, 1083
SseBI	AGGCCT	1 cut(s)	787
SspI	AATATT	1 cut(s)	912
SspMI	CTAG	3 cut(s)	639, 780, 813
StuI	AGGCCT	1 cut(s)	787
StyI	CCWWGG	2 cut(s)	812, 871
TaaI	ACNGT	2 cut(s)	1099, 1286
TaiI	ACGT	2 cut(s)	67, 240
TasI	AATT	5 cut(s)	337, 437, 486, 1028, 1083
TatI	WGTACW	2 cut(s)	53, 1024
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	491, 657, 993
Tru9I	TTAA	3 cut(s)	491, 657, 993
TscAI	CASTG	3 cut(s)	113, 329, 1169
TseFI	GTSAC	2 cut(s)	545, 741
Tsp45I	GTSAC	2 cut(s)	545, 741
TspDTI	ATGAA	4 cut(s)	750, 776, 960, 1098
TspGWI	ACGGA	3 cut(s)	506, 518, 723
TspRI	CASTG	3 cut(s)	113, 329, 1169
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	1190
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	2 cut(s)	452, 1246
XmaJI	CCTAGG	1 cut(s)	812
XspI	CTAG	3 cut(s)	639, 780, 813
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.