Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

3975873 .. 3979243

Gene Structure 3371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010731

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCAATCCAACGGCTCGGATTCCTCCTTGCAGCAGCAGCAACAGGAGCAAAGTACTCAGCCACGCCAGCAGCAGCCGCCGCCGCAGCAGTGGATGGCGATGCAGTACCCAGCGGCCGCGATGGTAATGCAGCACCAAATGATGCCACCGCAGCATTACGCGCCTCCGCCGCAACACTACATGGCGTACCACCAGTACCAGCAGCACCCGCAGCAGCACGTGCAGCAGCAGATGGGATCTGGCGGCGGCAGCGGCGAGAACAAGACCATCTGGGTCGGCGATTTGCACCACTGGATGGACGAGAATTACCTCCACAGCTGCTTCGCTTCCGCCGGCGAGATTGCCTCCATCAAGGTTATCCGCAATAAGCAGACTCTTTTATCAGAGGGCTATGGATTTGTAGAATTCTTTTCACATGCTACCGCTGAGAAAGTCCTACAGAGCTATGCTGCAATTTTAATGCCTAACACGGAACAGCCCTTCCGTCTGAACTGGGCAACATTTAGTACGGGTGACAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGACTTAGCTGCAGATGTTACAGATAGTTTATTGCACGAAACTTTTTCTAGTAAATATCCATCTGTTAAAGCCGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTACGGTTTTGTGAGGTTTGGCGACGAGAATGAAAGGTCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGATATCAGCAGCAAGGGGGGTATGCTCTGAATGGTACACCAGCCCAAGGGTTCCAATCTGATGGAGATGCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCCAATGTTACTGATGAAGATCTCAGGCAGCCTTTCTCTCAGTATGGCGAGATCGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTACAATTTGCCAATAGAAATAATGCTGAGGAGGCATTGCCGAAACTGAATGGCTCAGTAATTGGCAAGCAAACAGTCCGACTTTCATGGGGTCGCAATCCAGCAAATAAGCAGTTTAGAACTGATTTCGGCAACCAGTGGGCAGGAGCGGCGTACTATGGAGGACCTGTTTATGATGGTTATGGTTATGCTCTGCCACCACAACATGACCCAAGCATGTATGCTGCAGCTGCTGCATATGGCGCTTACCCTGTTTACGGTACCCACCAACAACAAGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

425

Amino Acids

46.73

Weight (kDa)

6.22

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	90 - 151	1.3e-10	RNA recognition motif
RRM_1	PF00076	183 - 252	1.4e-15	RNA recognition motif
RRM_1	PF00076	293 - 356	5.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1250
AccB1I	GGYRCC	1 cut(s)	1250
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	1139
AccII	CGCG	2 cut(s)	119, 161
AclWI	GGATC	2 cut(s)	244, 890
AcoI	YGGCCR	2 cut(s)	114, 658
AcsI	RAATTY	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	220
AfaI	GTAC	9 cut(s)	55, 107, 188, 197, 508, 829, 993, 1145, 1252
AfiI	CCNNNNNNNGG	4 cut(s)	295, 667, 839, 1247
AgsI	TTSAA	1 cut(s)	666
AloI	GAACNNNNNNTCC	2 cut(s)	465, 497
AluBI	AGCT	5 cut(s)	318, 444, 566, 1220, 1272
AluI	AGCT	5 cut(s)	318, 444, 566, 1220, 1272
Alw26I	GTCTC	2 cut(s)	552, 958
AlwI	GGATC	2 cut(s)	244, 890
AlwNI	CAGNNNCTG	1 cut(s)	1223
AoxI	GGCC	3 cut(s)	114, 658, 752
ApoI	RAATTY	1 cut(s)	404
Asp718I	GGTACC	1 cut(s)	1250
AspA2I	CCTAGG	1 cut(s)	779
AspLEI	GCGC	2 cut(s)	163, 1235
AspS9I	GGNCC	1 cut(s)	1154
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	1154
AvrII	CCTAGG	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	1250
BbrPI	CACGTG	1 cut(s)	220
BbvCI	CCTCAGC	1 cut(s)	1017
BccI	CCATC	9 cut(s)	88, 115, 226, 275, 289, 356, 625, 848, 1160
BceAI	ACGGC	2 cut(s)	28, 645
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcoDI	GTCTC	2 cut(s)	552, 958
BfaI	CTAG	3 cut(s)	606, 747, 780
BfmI	CTRYAG	3 cut(s)	437, 567, 1215
BfoI	RGCGCY	1 cut(s)	1236
BglII	AGATCT	1 cut(s)	916
BlnI	CCTAGG	1 cut(s)	779
BmcAI	AGTACT	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	1154
BmgT120I	GGNCC	1 cut(s)	1154
BmiI	GGNNCC	2 cut(s)	845, 1252
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	4 cut(s)	90, 132, 637, 850
BmuI	ACTGGG	1 cut(s)	502
BplI	GAGNNNNNCTC	4 cut(s)	329, 361, 938, 970
Bpu10I	CCTNAGC	1 cut(s)	1017
BsaAI	YACGTR	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	915
BsaJI	CCNNGG	2 cut(s)	779, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	1143, 1173
Bsc4I	CCNNNNNNNGG	4 cut(s)	295, 667, 839, 1247
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	6 cut(s)	193, 296, 497, 661, 968, 1126
Bse3DI	GCAATG	1 cut(s)	1025
Bse8I	GATNNNNATC	1 cut(s)	915
BseDI	CCNNGG	2 cut(s)	779, 838
BseGI	GGATG	3 cut(s)	99, 300, 986
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	4 cut(s)	295, 667, 839, 1247
BseMI	GCAATG	1 cut(s)	1025
BseMII	CTCAG	6 cut(s)	71, 417, 934, 950, 1008, 1059
BseNI	ACTGG	6 cut(s)	193, 296, 497, 661, 968, 1126
BseRI	GAGGAG	1 cut(s)	1034
BseX3I	CGGCCG	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	119, 161
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	116, 660, 754
BshNI	GGYRCC	1 cut(s)	1250
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	4 cut(s)	295, 667, 839, 1247
BsmAI	GTCTC	2 cut(s)	552, 958
BsmBI	CGTCTC	1 cut(s)	958
BsnI	GGCC	3 cut(s)	116, 660, 754
Bsp1407I	TGTACA	1 cut(s)	991
Bsp143I	GATC	5 cut(s)	236, 538, 895, 916, 948
BspANI	GGCC	3 cut(s)	116, 660, 754
BspCNI	CTCAG	6 cut(s)	70, 418, 933, 949, 1009, 1058
BspFNI	CGCG	2 cut(s)	119, 161
BspLI	GGNNCC	2 cut(s)	845, 1252
BspMAI	CTGCAG	2 cut(s)	571, 1219
BspPI	GGATC	2 cut(s)	244, 890
BspT107I	GGYRCC	1 cut(s)	1250
BsrBI	CCGCTC	1 cut(s)	1139
BsrDI	GCAATG	1 cut(s)	1025
BsrFI	RCCGGY	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	991
BsrI	ACTGG	6 cut(s)	193, 296, 497, 661, 968, 1126
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	779, 838
BssMI	GATC	5 cut(s)	236, 538, 895, 916, 948
BssT1I	CCWWGG	2 cut(s)	779, 838
Bst4CI	ACNGT	3 cut(s)	677, 1066, 1250
BstAPI	GCANNNNNTGC	2 cut(s)	220, 1223
BstAUI	TGTACA	1 cut(s)	991
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	4 cut(s)	68, 334, 752, 1058
BstDEI	CTNAG	7 cut(s)	57, 426, 562, 920, 936, 1017, 1045
BstF5I	GGATG	3 cut(s)	99, 300, 986
BstFNI	CGCG	2 cut(s)	119, 161
BstH2I	RGCGCY	1 cut(s)	1236
BstHHI	GCGC	2 cut(s)	163, 1235
BstKTI	GATC	5 cut(s)	239, 541, 898, 919, 951
BstMAI	GTCTC	2 cut(s)	552, 958
BstMBI	GATC	5 cut(s)	236, 538, 895, 916, 948
BstMCI	CGRYCG	1 cut(s)	117
BstNSI	RCATGY	2 cut(s)	419, 1210
BstSFI	CTRYAG	3 cut(s)	437, 567, 1215
BstUI	CGCG	2 cut(s)	119, 161
BstX2I	RGATCY	2 cut(s)	236, 916
BstXI	CCANNNNNNTGG	1 cut(s)	854
BstYI	RGATCY	2 cut(s)	236, 916
BstZI	CGGCCG	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	116, 660, 754
BtgZI	GCGATG	2 cut(s)	113, 134
BtsCI	GGATG	3 cut(s)	99, 300, 986
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	3 cut(s)	95, 289, 1133
Cac8I	GCNNGC	4 cut(s)	68, 334, 752, 1058
CaiI	CAGNNNCTG	1 cut(s)	1223
CciNI	GCGGCCGC	1 cut(s)	114
CfoI	GCGC	2 cut(s)	163, 1235
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	1154
Csp6I	GTAC	9 cut(s)	54, 106, 187, 196, 507, 828, 992, 1144, 1251
CviAII	CATG	5 cut(s)	181, 416, 1077, 1196, 1207
CviQI	GTAC	9 cut(s)	54, 106, 187, 196, 507, 828, 992, 1144, 1251
DdeI	CTNAG	7 cut(s)	57, 426, 562, 920, 936, 1017, 1045
DpnI	GATC	5 cut(s)	238, 540, 897, 918, 950
DpnII	GATC	5 cut(s)	236, 538, 895, 916, 948
EaeI	YGGCCR	2 cut(s)	114, 658
EagI	CGGCCG	1 cut(s)	114
EciI	GGCGGA	2 cut(s)	156, 319
EclXI	CGGCCG	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	779, 838
Eco147I	AGGCCT	1 cut(s)	754
Eco32I	GATATC	1 cut(s)	797
Eco47I	GGWCC	1 cut(s)	1154
Eco52I	CGGCCG	1 cut(s)	114
Eco72I	CACGTG	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	1154
EcoRI	GAATTC	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	797
EcoT14I	CCWWGG	2 cut(s)	779, 838
ErhI	CCWWGG	2 cut(s)	779, 838
Esp3I	CGTCTC	1 cut(s)	958
FaeI	CATG	5 cut(s)	184, 419, 1080, 1199, 1210
FatI	CATG	5 cut(s)	180, 415, 1076, 1195, 1206
FauI	CCCGC	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	1228
FokI	GGATG	3 cut(s)	106, 307, 993
FspBI	CTAG	3 cut(s)	606, 747, 780
GlaI	GCGC	2 cut(s)	162, 1234
GsaI	CCCAGC	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	1236
HaeIII	GGCC	3 cut(s)	116, 660, 754
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	2 cut(s)	163, 1235
Hin1II	CATG	5 cut(s)	184, 419, 1080, 1199, 1210
Hin6I	GCGC	2 cut(s)	161, 1233
HinP1I	GCGC	2 cut(s)	161, 1233
HinfI	GANTC	2 cut(s)	20, 373
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	830, 1246
Hpy188I	TCNGA	7 cut(s)	19, 385, 489, 526, 822, 853, 1070
Hpy188III	TCNNGA	2 cut(s)	536, 792
Hpy8I	GTNNAC	2 cut(s)	830, 1246
Hpy99I	CGWCG	1 cut(s)	698
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	3 cut(s)	677, 1066, 1250
HpyCH4IV	ACGT	1 cut(s)	219
HpyF3I	CTNAG	7 cut(s)	57, 426, 562, 920, 936, 1017, 1045
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	184, 419, 1080, 1199, 1210
HspAI	GCGC	2 cut(s)	161, 1233
KpnI	GGTACC	1 cut(s)	1254
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	236, 538, 895, 916, 948
LmnI	GCTCC	3 cut(s)	46, 538, 1136
LweI	GCATC	4 cut(s)	90, 132, 637, 850
MaeI	CTAG	3 cut(s)	606, 747, 780
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	512, 574, 708, 904
MalI	GATC	5 cut(s)	238, 540, 897, 918, 950
MbiI	CCGCTC	1 cut(s)	1139
MboI	GATC	5 cut(s)	236, 538, 895, 916, 948
MboII	GAAGA	1 cut(s)	926
MflI	RGATCY	2 cut(s)	236, 916
MluCI	AATT	5 cut(s)	304, 404, 453, 995, 1050
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	4 cut(s)	33, 865, 952, 1093
MreI	CGCCGGCG	1 cut(s)	332
MroNI	GCCGGC	1 cut(s)	332
MseI	TTAA	3 cut(s)	458, 624, 960
MspA1I	CMGCKG	5 cut(s)	113, 252, 318, 425, 1220
MspI	CCGG	1 cut(s)	333
MvnI	CGCG	2 cut(s)	119, 161
NaeI	GCCGGC	1 cut(s)	334
NdeI	CATATG	1 cut(s)	1228
NdeII	GATC	5 cut(s)	236, 538, 895, 916, 948
NgoMIV	GCCGGC	1 cut(s)	332
NlaIII	CATG	5 cut(s)	184, 419, 1080, 1199, 1210
NlaIV	GGNNCC	2 cut(s)	845, 1252
NmuCI	GTSAC	2 cut(s)	512, 708
NotI	GCGGCCGC	1 cut(s)	114
NspI	RCATGY	2 cut(s)	419, 1210
PceI	AGGCCT	1 cut(s)	754
PdiI	GCCGGC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	295
PleI	GAGTC	1 cut(s)	367
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	1154
Psp5II	RGGWCCY	1 cut(s)	1154
PspCI	CACGTG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	845, 1252
PspPI	GGNCC	1 cut(s)	1154
PspPPI	RGGWCCY	1 cut(s)	1154
PstI	CTGCAG	2 cut(s)	571, 1219
PstNI	CAGNNNCTG	1 cut(s)	1223
PsuI	RGATCY	2 cut(s)	236, 916
PvuII	CAGCTG	2 cut(s)	318, 1220
RsaI	GTAC	9 cut(s)	55, 107, 188, 197, 508, 829, 993, 1145, 1252
RsaNI	GTAC	9 cut(s)	54, 106, 187, 196, 507, 828, 992, 1144, 1251
SaqAI	TTAA	3 cut(s)	458, 624, 960
Sau3AI	GATC	5 cut(s)	236, 538, 895, 916, 948
Sau96I	GGNCC	1 cut(s)	1154
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	367
SfaNI	GCATC	4 cut(s)	90, 132, 637, 850
SfcI	CTRYAG	3 cut(s)	437, 567, 1215
SgrAI	CRCCGGYG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	1154
Sse9I	AATT	5 cut(s)	304, 404, 453, 995, 1050
SseBI	AGGCCT	1 cut(s)	754
SspI	AATATT	1 cut(s)	879
SspMI	CTAG	3 cut(s)	606, 747, 780
StuI	AGGCCT	1 cut(s)	754
StyI	CCWWGG	2 cut(s)	779, 838
TaaI	ACNGT	3 cut(s)	677, 1066, 1250
TaiI	ACGT	1 cut(s)	222
TasI	AATT	5 cut(s)	304, 404, 453, 995, 1050
TatI	WGTACW	2 cut(s)	53, 991
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	458, 624, 960
Tru9I	TTAA	3 cut(s)	458, 624, 960
TscAI	CASTG	3 cut(s)	95, 296, 1133
TseFI	GTSAC	2 cut(s)	512, 708
Tsp45I	GTSAC	2 cut(s)	512, 708
TspDTI	ATGAA	4 cut(s)	717, 743, 927, 1065
TspGWI	ACGGA	2 cut(s)	473, 485
TspRI	CASTG	3 cut(s)	95, 296, 1133
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	1154
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	2 cut(s)	419, 1210
XmaJI	CCTAGG	1 cut(s)	779
XspI	CTAG	3 cut(s)	606, 747, 780
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.