Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Reverse (-)

65678789 .. 65682896

Gene Structure 4108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCAATCCAACGGCTCGGATTCCTCCCTGCAGCAGCAGCAGCAGCAGCAACAGGACCAAAGTACTCAGCCACGTCAGCAGCCGCCGCCGCCGCCGCAGCAGTGGATGGCGATGCAGTACCCAGCGGCCGCGATGGTAATGCAGCACCAAATGATGCCACCGCAGCATTACGCGCCTCCGCCGCAACACTACATGGCGTACCACCAGTACCAGCAGCACCCGCAGCAGCACGTGCAGCAACAGCAGCAGCAGATGGGATCTGGCGGCGGCGGCAGCGGCGAGAACAAGACCATCTGGGTCGGCGATTTGCACCACTGGATGGACGAGAATTACCTCCACAGCTGCTTCGCTTCCGCCGGCGAGATTGCCTCCATCAAGGTTATCCGCAATAAGCAGACTCTTTTATCAGAGGGCTACGGATTTGTAGAATTCTTTTCACATGCTACAGCTGAGAAAGTCCTACAGAGCTATGCTGCAATTTTAATGCCTAACACGGAACAGCCCTTCCGTCTGAACTGGGCAACATTTAGTACGGGTGACAAGCGTTCAGATAATGCTCCTGATCTTTCCATTTTTGTAGGAGACTTAGCAGCAGATGTTACAGATAGTTTATTGCACGAAACTTTTTCTAGTAAATATCCATCTGTTAAAGCCGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTTGTGAGGTTTGGCGACGAGAATGAAAGGTCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGATATCAGCAGCAAGGGGGGTATGCTCTGAATGGTACACCAGCCCAAGGGTTCCAATCTGATGGAGATGCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCCAATGTTACTGATGAAGATCTCAGGCAGCCTTTCTCTCAGTATGGCGAGATCGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTTCAATTTGCCAATAGAAATAATGCTGAGGAGGCATTGCCGAAACTGAATGGCTCAGTAATTGGCAAGCAAACAGTCCGACTTTCATGGGGTCGCAATCCAGCAAATAAGCAGGCATTCTCTCTTTCTTATAACCTTCTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

386

Amino Acids

42.66

Weight (kDa)

6.41

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	98 - 159	1.1e-10	RNA recognition motif
RRM_1	PF00076	191 - 260	1.2e-15	RNA recognition motif
RRM_1	PF00076	301 - 364	4.6e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1146
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccII	CGCG	2 cut(s)	131, 173
AclWI	GGATC	2 cut(s)	265, 914
AcoI	YGGCCR	2 cut(s)	126, 682
AcsI	RAATTY	1 cut(s)	428
AcvI	CACGTG	1 cut(s)	232
AfaI	GTAC	6 cut(s)	64, 119, 200, 209, 532, 853
AfiI	CCNNNNNNNGG	3 cut(s)	319, 691, 863
AgsI	TTSAA	2 cut(s)	690, 1019
AjiI	CACGTC	1 cut(s)	74
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	3 cut(s)	342, 449, 468
AluI	AGCT	3 cut(s)	342, 449, 468
Alw26I	GTCTC	2 cut(s)	576, 982
AlwI	GGATC	2 cut(s)	265, 914
AoxI	GGCC	3 cut(s)	126, 682, 776
ApoI	RAATTY	1 cut(s)	428
AspA2I	CCTAGG	1 cut(s)	803
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	55
AvrII	CCTAGG	1 cut(s)	803
BbrPI	CACGTG	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	1041
BccI	CCATC	8 cut(s)	100, 127, 247, 299, 313, 380, 649, 872
BceAI	ACGGC	2 cut(s)	28, 669
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BcoDI	GTCTC	2 cut(s)	576, 982
BfaI	CTAG	3 cut(s)	630, 771, 804
BfmI	CTRYAG	3 cut(s)	29, 444, 461
BglII	AGATCT	1 cut(s)	940
BlnI	CCTAGG	1 cut(s)	803
BmcAI	AGTACT	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	869
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	4 cut(s)	102, 144, 661, 874
BmuI	ACTGGG	1 cut(s)	526
BplI	GAGNNNNNCTC	4 cut(s)	353, 385, 962, 994
Bpu10I	CCTNAGC	1 cut(s)	1041
BsaAI	YACGTR	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	939
BsaJI	CCNNGG	2 cut(s)	803, 862
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 691, 863
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	5 cut(s)	205, 320, 521, 685, 992
Bse3DI	GCAATG	1 cut(s)	1049
Bse8I	GATNNNNATC	1 cut(s)	939
BseDI	CCNNGG	2 cut(s)	803, 862
BseGI	GGATG	3 cut(s)	111, 324, 1010
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	3 cut(s)	319, 691, 863
BseMI	GCAATG	1 cut(s)	1049
BseMII	CTCAG	6 cut(s)	80, 441, 958, 974, 1032, 1083
BseNI	ACTGG	5 cut(s)	205, 320, 521, 685, 992
BseRI	GAGGAG	1 cut(s)	1058
BseX3I	CGGCCG	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	2 cut(s)	131, 173
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	128, 684, 778
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	319, 691, 863
BsmAI	GTCTC	2 cut(s)	576, 982
BsmBI	CGTCTC	1 cut(s)	982
BsmI	GAATGC	1 cut(s)	1130
BsnI	GGCC	3 cut(s)	128, 684, 778
Bsp143I	GATC	5 cut(s)	257, 562, 919, 940, 972
BspANI	GGCC	3 cut(s)	128, 684, 778
BspCNI	CTCAG	6 cut(s)	79, 442, 957, 973, 1033, 1082
BspFNI	CGCG	2 cut(s)	131, 173
BspLI	GGNNCC	1 cut(s)	869
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	2 cut(s)	265, 914
BsrDI	GCAATG	1 cut(s)	1049
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	5 cut(s)	205, 320, 521, 685, 992
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	803, 862
BssMI	GATC	5 cut(s)	257, 562, 919, 940, 972
BssT1I	CCWWGG	2 cut(s)	803, 862
Bst4CI	ACNGT	1 cut(s)	1090
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	358, 776, 1082, 1128
BstDEI	CTNAG	7 cut(s)	66, 450, 586, 944, 960, 1041, 1069
BstF5I	GGATG	3 cut(s)	111, 324, 1010
BstFNI	CGCG	2 cut(s)	131, 173
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	5 cut(s)	260, 565, 922, 943, 975
BstMAI	GTCTC	2 cut(s)	576, 982
BstMBI	GATC	5 cut(s)	257, 562, 919, 940, 972
BstMCI	CGRYCG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	443
BstSFI	CTRYAG	3 cut(s)	29, 444, 461
BstUI	CGCG	2 cut(s)	131, 173
BstX2I	RGATCY	2 cut(s)	257, 940
BstXI	CCANNNNNNTGG	1 cut(s)	878
BstYI	RGATCY	2 cut(s)	257, 940
BstZI	CGGCCG	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	128, 684, 778
BtgZI	GCGATG	2 cut(s)	125, 146
BtrI	CACGTC	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	111, 324, 1010
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	2 cut(s)	107, 313
Cac8I	GCNNGC	4 cut(s)	358, 776, 1082, 1128
CciNI	GCGGCCGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	6 cut(s)	63, 118, 199, 208, 531, 852
CviAII	CATG	3 cut(s)	193, 440, 1101
CviQI	GTAC	6 cut(s)	63, 118, 199, 208, 531, 852
DdeI	CTNAG	7 cut(s)	66, 450, 586, 944, 960, 1041, 1069
DpnI	GATC	5 cut(s)	259, 564, 921, 942, 974
DpnII	GATC	5 cut(s)	257, 562, 919, 940, 972
EaeI	YGGCCR	2 cut(s)	126, 682
EagI	CGGCCG	1 cut(s)	126
EciI	GGCGGA	2 cut(s)	168, 343
EclXI	CGGCCG	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	803, 862
Eco147I	AGGCCT	1 cut(s)	778
Eco32I	GATATC	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	821
EcoT14I	CCWWGG	2 cut(s)	803, 862
ErhI	CCWWGG	2 cut(s)	803, 862
Esp3I	CGTCTC	1 cut(s)	982
FaeI	CATG	3 cut(s)	196, 443, 1104
FatI	CATG	3 cut(s)	192, 439, 1100
FauI	CCCGC	1 cut(s)	228
FokI	GGATG	3 cut(s)	118, 331, 1017
FspBI	CTAG	3 cut(s)	630, 771, 804
GlaI	GCGC	1 cut(s)	174
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	128, 684, 778
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	196, 443, 1104
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	20, 397
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	854
Hpy188I	TCNGA	7 cut(s)	19, 409, 513, 550, 846, 877, 1094
Hpy188III	TCNNGA	3 cut(s)	560, 816, 1158
Hpy8I	GTNNAC	1 cut(s)	854
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	2 cut(s)	514, 1160
HpyCH4III	ACNGT	1 cut(s)	1090
HpyCH4IV	ACGT	2 cut(s)	73, 231
HpyCH4V	TGCA	9 cut(s)	4, 31, 115, 142, 235, 310, 476, 616, 797
HpyF3I	CTNAG	7 cut(s)	66, 450, 586, 944, 960, 1041, 1069
HpySE526I	ACGT	2 cut(s)	73, 231
Hsp92II	CATG	3 cut(s)	196, 443, 1104
HspAI	GCGC	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	257, 562, 919, 940, 972
LmnI	GCTCC	1 cut(s)	562
LweI	GCATC	4 cut(s)	102, 144, 661, 874
MaeI	CTAG	3 cut(s)	630, 771, 804
MaeII	ACGT	2 cut(s)	73, 231
MaeIII	GTNAC	4 cut(s)	536, 598, 732, 928
MalI	GATC	5 cut(s)	259, 564, 921, 942, 974
MboI	GATC	5 cut(s)	257, 562, 919, 940, 972
MboII	GAAGA	1 cut(s)	950
MflI	RGATCY	2 cut(s)	257, 940
MluCI	AATT	5 cut(s)	328, 428, 477, 1019, 1074
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	4 cut(s)	33, 889, 976, 1117
MnlI	CCTC	9 cut(s)	34, 186, 344, 379, 403, 702, 905, 1036, 1039
MreI	CGCCGGCG	1 cut(s)	356
MroNI	GCCGGC	1 cut(s)	356
MseI	TTAA	3 cut(s)	482, 648, 984
MspA1I	CMGCKG	4 cut(s)	125, 276, 342, 449
MspI	CCGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	1130
MvnI	CGCG	2 cut(s)	131, 173
NaeI	GCCGGC	1 cut(s)	358
NdeII	GATC	5 cut(s)	257, 562, 919, 940, 972
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	3 cut(s)	196, 443, 1104
NlaIV	GGNNCC	1 cut(s)	869
NmuCI	GTSAC	2 cut(s)	536, 732
NotI	GCGGCCGC	1 cut(s)	126
NspI	RCATGY	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	778
PctI	GAATGC	1 cut(s)	1130
PdiI	GCCGGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	319
PleI	GAGTC	1 cut(s)	391
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	391
Ppu21I	YACGTR	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	1146
PspCI	CACGTG	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	869
PspPI	GGNCC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	257, 940
PvuII	CAGCTG	2 cut(s)	342, 449
RsaI	GTAC	6 cut(s)	64, 119, 200, 209, 532, 853
RsaNI	GTAC	6 cut(s)	63, 118, 199, 208, 531, 852
SaqAI	TTAA	3 cut(s)	482, 648, 984
Sau3AI	GATC	5 cut(s)	257, 562, 919, 940, 972
Sau96I	GGNCC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	1 cut(s)	391
SfaNI	GCATC	4 cut(s)	102, 144, 661, 874
SfcI	CTRYAG	3 cut(s)	29, 444, 461
SgrAI	CRCCGGYG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	5 cut(s)	328, 428, 477, 1019, 1074
SseBI	AGGCCT	1 cut(s)	778
SspI	AATATT	1 cut(s)	903
SspMI	CTAG	3 cut(s)	630, 771, 804
StuI	AGGCCT	1 cut(s)	778
StyI	CCWWGG	2 cut(s)	803, 862
TaaI	ACNGT	1 cut(s)	1090
TaiI	ACGT	2 cut(s)	76, 234
TasI	AATT	5 cut(s)	328, 428, 477, 1019, 1074
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	482, 648, 984
Tru9I	TTAA	3 cut(s)	482, 648, 984
TscAI	CASTG	2 cut(s)	107, 320
TseFI	GTSAC	2 cut(s)	536, 732
Tsp45I	GTSAC	2 cut(s)	536, 732
TspDTI	ATGAA	4 cut(s)	741, 767, 951, 1089
TspGWI	ACGGA	3 cut(s)	432, 497, 509
TspRI	CASTG	2 cut(s)	107, 320
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	443
XmaJI	CCTAGG	1 cut(s)	803
XspI	CTAG	3 cut(s)	630, 771, 804
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.