Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013525

Physical Location & Seq

Genomic Coordinates Forward (+)

17847042 .. 17848338

Gene Structure 1297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAAGTTTCCGGCGTCGTCCTCCGACAAATTCCATGTGTTTCTTCAGGTTCCGTTGCAGGTCTCCGATTAGTATCGGAATTTTCCGGTAATACCAGAACGGTAGGGTTTCGAACCAGAAGATTTCGTGGTATTGTGTGTAATAATGAGTTTGCGGATAAAGGGCATGTGAATTACTATATCGAGCCAACGAGATGCGGCGAGGAGAAAGAGAAGGTTAAGGTTATGGAGAAGGAGAAGAAGGCGTTGAAGAAGAAGGCGAAAGTTCTTAAAAGTCTTTCTAAGAACTTGGATATGTTCTCTAGTATAGGGTTTGGTCTTGATCCTGAAGCTGGTTTGGTTGGTGAGATTCAGACCAAGACAATCTCGGAAGCTACAGAGATATTGGTTAAGCAGCTGGAGCAGTTGAAAGCAGAGGAGAAGATATTGAAGAAACAGAGGAAAGAAGAGAAGGCTAAAGCCAAAGCCATGAAGAAGATGACTGAAATGGACTCTGAATCATCTTCTTCGTCTGAATCAAGTGATAGTGATTGTGATAAAGGCAAAGTTGTGGACATGAGCTCTTTAAGAAACAAGGCTAAACCGGTTCTTGAGCCGTTACAACCAGAAGCCACAGTAGCAACCCTTCCTAGGATCCAAGAGGATGCAATTTCTTGCAAGAACACCAGTGAAGCATTGCAGATTGCTCTACAAACATCCACAATTTTTCCTTCAATGGCCAATCCTGGACAGACATTGAAGACGGTAGAAGCGGTTTCAGTGGTTGGATTACCATTGAATAGAGTAGAAGTGTGTATGGGAGGGAAGTGTAAGAGATCAGGAGGAGCTTTGTTGTTGGATGAGTTTCAAAGGGCGATGACGGGTTTCGAAGGATCTGCTGTGGCTTGCAAGTGCATGGGGAAGTGTCGTGATGGCCCAAACGTTAGAGTTGTGAAGGAGACTGATGCTGTGATGACTGATTCAGTTAGGACACCATCCAAGACCCTTTGTGTAGGAGTTGGATTGCAGGATGTGGAAACTATTGTGACAAGTTTCTTTGATGAAGAATGTAGCAGAGAAGGACTCGGTTCTGTCTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

39.15

Weight (kDa)

8.61

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48300
fragaria_vesca	FvH4_4g21650 FvH4_4g21660
malus_domestica	MD13G1156700.v1.1 MD16G1134300.v1.1
prunus_persica	Prupe.1G103600_v2.0.a1 Prupe.1G103600_v2.0.a1
pyrus_communis	pycom13g12050 pycom16g11860
rosa_chinensis	RchiOBHm_Chr4g0427881
rosa_multiflora	Rmu_co8387153.1_g000001 Rmu_sc0000066.1_g000016
rosa_roxburghii	Rroxscaffold_5G00369530
rosa_rugosa	Rorug04G0220200
rosa_samantha	Rh4AG277200 Rh4BG283000 Rh4DG280100
rosa_wichuraiana	Rw4G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AciI	CCGC	3 cut(s)	155, 198, 752
AclI	AACGTT	1 cut(s)	921
AclWI	GGATC	4 cut(s)	317, 628, 641, 880
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	2 cut(s)	30, 80
AcuI	CTGAAG	2 cut(s)	30, 348
AcyI	GRCGYC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	332, 630
AgeI	ACCGGT	1 cut(s)	583
AgsI	TTSAA	7 cut(s)	250, 409, 430, 714, 739, 778, 848
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	5 cut(s)	332, 374, 397, 561, 827
AluI	AGCT	5 cut(s)	332, 374, 397, 561, 827
Alw21I	GWGCWC	1 cut(s)	563
Alw26I	GTCTC	3 cut(s)	68, 932, 1078
AlwI	GGATC	4 cut(s)	317, 628, 641, 880
AoxI	GGCC	2 cut(s)	717, 913
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	2 cut(s)	30, 80
AsiGI	ACCGGT	1 cut(s)	583
AspA2I	CCTAGG	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	914
AsuHPI	GGTGA	1 cut(s)	356
AsuII	TTCGAA	2 cut(s)	112, 867
AvrII	CCTAGG	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	633
BanII	GRGCYC	1 cut(s)	563
BarI	GAAGNNNNNNTAC	2 cut(s)	609, 641
BbsI	GAAGAC	1 cut(s)	746
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	905, 982
BceAI	ACGGC	1 cut(s)	580
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	1 cut(s)	726
BcoDI	GTCTC	3 cut(s)	68, 932, 1078
BfaI	CTAG	2 cut(s)	303, 630
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	2 cut(s)	199, 395
BlnI	CCTAGG	1 cut(s)	629
BlsI	GCNGC	2 cut(s)	200, 396
Bme1390I	CCNGG	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	914
BmiI	GGNNCC	2 cut(s)	52, 635
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	3 cut(s)	185, 634, 934
BpiI	GAAGAC	1 cut(s)	746
BplI	GAGNNNNNCTC	2 cut(s)	1047, 1079
BpmI	CTGGAG	1 cut(s)	419
Bpu14I	TTCGAA	2 cut(s)	112, 867
BpuEI	CTTGAG	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	629
BsaWI	WCCGGW	2 cut(s)	86, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 630
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	666
Bse3DI	GCAATG	1 cut(s)	674
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	5 cut(s)	649, 695, 844, 974, 1015
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	332, 630
BseMI	GCAATG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	3 cut(s)	218, 431, 837
BseXI	GCAGC	1 cut(s)	406
BshFI	GGCC	2 cut(s)	719, 915
BshTI	ACCGGT	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	563
BsiSI	CCGG	3 cut(s)	12, 87, 584
BslI	CCNNNNNNNGG	2 cut(s)	332, 630
BsmAI	GTCTC	3 cut(s)	68, 932, 1078
BsnI	GGCC	2 cut(s)	719, 915
Bso31I	GGTCTC	1 cut(s)	68
Bsp119I	TTCGAA	2 cut(s)	112, 867
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp143I	GATC	4 cut(s)	322, 633, 815, 872
BspACI	CCGC	3 cut(s)	155, 198, 752
BspANI	GGCC	2 cut(s)	719, 915
BspLI	GGNNCC	2 cut(s)	52, 635
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	4 cut(s)	317, 628, 641, 880
BspT104I	TTCGAA	2 cut(s)	112, 867
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	666
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	4 cut(s)	322, 633, 815, 872
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	3 cut(s)	103, 616, 745
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	15
BstBI	TTCGAA	2 cut(s)	112, 867
BstC8I	GCNNGC	1 cut(s)	886
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	5 cut(s)	649, 695, 844, 974, 1015
BstKTI	GATC	4 cut(s)	325, 636, 818, 875
BstMAI	GTCTC	3 cut(s)	68, 932, 1078
BstMBI	GATC	4 cut(s)	322, 633, 815, 872
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 617
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	2 cut(s)	633, 872
BstYI	RGATCY	2 cut(s)	633, 872
BsuRI	GGCC	2 cut(s)	719, 915
BtgZI	GCGATG	1 cut(s)	869
BtsCI	GGATG	5 cut(s)	649, 695, 844, 974, 1015
BtsIMutI	CAGTG	2 cut(s)	673, 765
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	886
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	914
CseI	GACGC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	583
CviAII	CATG	5 cut(s)	36, 167, 469, 556, 895
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	4 cut(s)	324, 635, 817, 874
DpnII	GATC	4 cut(s)	322, 633, 815, 872
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Ecl136II	GAGCTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	629
Eco24I	GRGCYC	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	561
Eco57I	CTGAAG	2 cut(s)	30, 348
EcoICRI	GAGCTC	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	5 cut(s)	39, 170, 472, 559, 898
FatI	CATG	5 cut(s)	35, 166, 468, 555, 894
Fnu4HI	GCNGC	2 cut(s)	199, 395
FokI	GGATG	5 cut(s)	656, 682, 851, 961, 1022
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	2 cut(s)	199, 395
FspBI	CTAG	2 cut(s)	303, 630
GluI	GCNGC	2 cut(s)	199, 395
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	719, 915
HapII	CCGG	3 cut(s)	12, 87, 584
HgaI	GACGC	1 cut(s)	4
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	5 cut(s)	39, 170, 472, 559, 898
HinfI	GANTC	6 cut(s)	349, 491, 497, 515, 959, 1062
HpaII	CCGG	3 cut(s)	12, 87, 584
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	7 cut(s)	26, 68, 79, 354, 370, 496, 514
Hpy188III	TCNNGA	5 cut(s)	320, 326, 590, 819, 908
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4III	ACNGT	3 cut(s)	103, 616, 745
HpyCH4IV	ACGT	1 cut(s)	921
HpyCH4V	TGCA	7 cut(s)	59, 647, 657, 679, 888, 894, 1006
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 617
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	921
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	39, 170, 472, 559, 898
Kzo9I	GATC	4 cut(s)	322, 633, 815, 872
LmnI	GCTCC	2 cut(s)	400, 824
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	3 cut(s)	185, 634, 934
MaeI	CTAG	2 cut(s)	303, 630
MaeII	ACGT	1 cut(s)	921
MaeIII	GTNAC	2 cut(s)	597, 1024
MalI	GATC	4 cut(s)	324, 635, 817, 874
MboI	GATC	4 cut(s)	322, 633, 815, 872
MflI	RGATCY	2 cut(s)	633, 872
MhlI	GDGCHC	1 cut(s)	563
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	5 cut(s)	30, 80, 172, 648, 702
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	2 cut(s)	485, 1056
MmeI	TCCRAC	4 cut(s)	49, 745, 816, 979
MnlI	CCTC	7 cut(s)	32, 196, 409, 432, 634, 794, 815
Mox20I	TGGCCA	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	4 cut(s)	219, 270, 390, 566
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	3 cut(s)	12, 87, 584
MspR9I	CCNGG	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	2 cut(s)	400, 617
NdeII	GATC	4 cut(s)	322, 633, 815, 872
NlaIII	CATG	5 cut(s)	39, 170, 472, 559, 898
NlaIV	GGNNCC	2 cut(s)	52, 635
NmuCI	GTSAC	1 cut(s)	1024
NspI	RCATGY	1 cut(s)	170
NspV	TTCGAA	2 cut(s)	112, 867
PfeI	GAWTC	4 cut(s)	349, 497, 515, 959
PfoI	TCCNGGA	1 cut(s)	724
PinAI	ACCGGT	1 cut(s)	583
PkrI	GCNGC	2 cut(s)	200, 396
PleI	GAGTC	2 cut(s)	485, 1056
PpsI	GAGTC	2 cut(s)	485, 1056
Psp124BI	GAGCTC	1 cut(s)	563
Psp1406I	AACGTT	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	52, 635
PspPI	GGNCC	1 cut(s)	914
PsuI	RGATCY	2 cut(s)	633, 872
PvuII	CAGCTG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	563
SaqAI	TTAA	4 cut(s)	219, 270, 390, 566
SatI	GCNGC	2 cut(s)	199, 395
Sau3AI	GATC	4 cut(s)	322, 633, 815, 872
Sau96I	GGNCC	1 cut(s)	914
SchI	GAGTC	2 cut(s)	485, 1056
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	3 cut(s)	185, 634, 934
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	2 cut(s)	112, 867
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	5 cut(s)	30, 80, 172, 648, 702
SsiI	CCGC	3 cut(s)	155, 198, 752
SspMI	CTAG	2 cut(s)	303, 630
SstI	GAGCTC	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	3 cut(s)	103, 616, 745
TaiI	ACGT	1 cut(s)	924
TaqI	TCGA	3 cut(s)	112, 183, 867
TasI	AATT	5 cut(s)	30, 80, 172, 648, 702
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	4 cut(s)	349, 497, 515, 959
Tru1I	TTAA	4 cut(s)	219, 270, 390, 566
Tru9I	TTAA	4 cut(s)	219, 270, 390, 566
TscAI	CASTG	2 cut(s)	673, 765
TseFI	GTSAC	1 cut(s)	1024
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	1024
TspDTI	ATGAA	2 cut(s)	485, 1056
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	673, 765
XapI	RAATTY	2 cut(s)	30, 80
XceI	RCATGY	1 cut(s)	170
XmaJI	CCTAGG	1 cut(s)	629
XspI	CTAG	2 cut(s)	303, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.