Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013525

Physical Location & Seq

Genomic Coordinates Reverse (-)

8251338 .. 8252789

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGGTCTCCGGCGCCGTTTCCCGCCAAGTTCCGTGCTTTTCCGCCGCTAAAATCGACACCACCGCCCGTTCTTGTACGACTTCGTTTAGCTGCGAGCTTCGCGCTCTGGGTCGCAGAGAATTTGGAGTTTCGTTGATAATCAGAAGGCCTCGCCGGCATTTGAATTCTGGGTTTAGCGACGACGGACGTTTACAGTATTATCAGGTGGGTCCCATGTGCGGTGGTATGAAAGAGAAGGAGAAGGAGATCAAGAAGAAGATGAAGTTGCTCAAGGGGTTGTCGAAGGACTTGGCGGCGTATTCTCAGATGGGTTTTGGACCTTTGGATTCTCAGGAGGGTTTGGCCCCTCAATTTCAGGGGAAGCTGATCTCGGAAGGTGCAGAGGAATTATTGTTAAAACAATTGGAACAGCTGAGAGCAGAGGAGAAGGAATTGAAGAGGAAGAGGAAAGAAGAGAAGGCAAGGTTTAAAGCCGAGTGGATGAAAACCATGGTTGACAGTGAATCATCGTCATCTTTATCATCTGAATCGAGTGGCAGTGAGTGCGGGGATGCGGTAGACATGAAGCGCCTGCAAACTGAAGTCCCAGCGCAACCGATGGTGGATGTTTTGCAGCCATTCGCTCATCAAGAAGGGGCATCGTTGACCATACTGAGCTCGCTAACAACTCATCAAGAGAACACAACTGTCGATAATGGCATTGAACTTGGGATATTACAGATTGGTCAGAAAGCGGAATGCTGCAATGGAACTAGTACTAGTTGCAGTAGCAGTGGTAGTATTGGCATTGATGACGCAGTAAGTAGCTCAGTTGTCGGAGTATCTGCGAAGAGGATTGAGGTGTGCATGGGAAACAAGTGCAAGAAATCAGGAGGCGGAGCATTGTTGAAAGAATTTGAGAGGCAGATGGTTGTTGAAGGGACTGTTGTAGGGGTCAAGTGTATGGGAAAATGCAAAAATGGCCCTAATGTGAGGGTTTCGAGCACCATAGATGGGATTCAATCTGAAGGAATGGATGATTCGATTAGAACTCCGACAAATCCTTTGTACATTGGAGTTGGCATGGAAGATGTGAGCCTCATTGTGGCTAATTTAATTGGTGAAGACAGCAAGGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

40.4

Weight (kDa)

6.41

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48300
fragaria_vesca	FvH4_4g21650 FvH4_4g21660
malus_domestica	MD13G1156700.v1.1 MD16G1134300.v1.1
prunus_persica	Prupe.1G103600_v2.0.a1 Prupe.1G103600_v2.0.a1
pyrus_communis	pycom13g12050 pycom16g11860
rosa_chinensis	RchiOBHm_Chr4g0427881
rosa_multiflora	Rmu_co8387153.1_g000001 Rmu_sc0000066.1_g000016
rosa_roxburghii	Rroxscaffold_5G00369530
rosa_rugosa	Rorug04G0220200
rosa_samantha	Rh4AG277200 Rh4BG283000 Rh4DG280100
rosa_wichuraiana	Rw4G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	122, 166, 896
AcuI	CTGAAG	2 cut(s)	603, 1029
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	3 cut(s)	79, 760, 1052
AfiI	CCNNNNNNNGG	3 cut(s)	221, 996, 1087
AgsI	TTSAA	6 cut(s)	166, 439, 707, 892, 920, 1004
AhlI	ACTAGT	2 cut(s)	755, 761
AluBI	AGCT	6 cut(s)	93, 100, 367, 415, 660, 810
AluI	AGCT	6 cut(s)	93, 100, 367, 415, 660, 810
Alw21I	GWGCWC	2 cut(s)	662, 989
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	3 cut(s)	149, 345, 964
ApeKI	GCWGC	3 cut(s)	93, 616, 744
ApoI	RAATTY	3 cut(s)	122, 166, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	1030, 1062
AspLEI	GCGC	4 cut(s)	17, 107, 573, 595
AspS9I	GGNCC	4 cut(s)	212, 320, 346, 965
AsuHPI	GGTGA	1 cut(s)	1115
AvaII	GGWCC	2 cut(s)	212, 320
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	1113
Bbv12I	GWGCWC	2 cut(s)	662, 989
BbvI	GCAGC	3 cut(s)	80, 628, 731
BccI	CCATC	4 cut(s)	304, 595, 904, 989
BceAI	ACGGC	1 cut(s)	2
BcoDI	GTCTC	1 cut(s)	13
BcuI	ACTAGT	2 cut(s)	755, 761
BfaI	CTAG	2 cut(s)	756, 762
BfoI	RGCGCY	2 cut(s)	18, 574
BglI	GCCNNNNNGGC	1 cut(s)	157
BisI	GCNGC	5 cut(s)	48, 94, 297, 617, 745
BlsI	GCNGC	5 cut(s)	49, 95, 298, 618, 746
BmcAI	AGTACT	1 cut(s)	760
Bme18I	GGWCC	2 cut(s)	212, 320
BmgT120I	GGNCC	4 cut(s)	212, 320, 346, 965
BmiI	GGNNCC	4 cut(s)	16, 213, 214, 348
BmsI	GCATC	2 cut(s)	544, 650
BpiI	GAAGAC	1 cut(s)	1113
BpuEI	CTTGAG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 996, 1087
Bse118I	RCCGGY	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	4 cut(s)	489, 559, 613, 1024
BseLI	CCNNNNNNNGG	3 cut(s)	221, 996, 1087
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	5 cut(s)	320, 347, 407, 647, 825
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	3 cut(s)	80, 628, 731
BseYI	CCCAGC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	151, 347, 966
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	2 cut(s)	662, 989
BsiSI	CCGG	2 cut(s)	12, 157
BslFI	GGGAC	3 cut(s)	198, 572, 937
BslI	CCNNNNNNNGG	3 cut(s)	221, 996, 1087
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	3 cut(s)	198, 572, 937
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	3 cut(s)	151, 347, 966
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	662, 989
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	2 cut(s)	249, 369
Bsp19I	CCATGG	1 cut(s)	492
BspANI	GGCC	3 cut(s)	151, 347, 966
BspCNI	CTCAG	5 cut(s)	319, 346, 408, 648, 824
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	16, 213, 214, 348
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	754
BsrFI	RCCGGY	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	1050
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	249, 369
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	4 cut(s)	198, 503, 691, 928
Bst6I	CTCTTC	4 cut(s)	434, 440, 450, 827
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstAUI	TGTACA	1 cut(s)	1050
BstC8I	GCNNGC	4 cut(s)	98, 158, 575, 662
BstDEI	CTNAG	5 cut(s)	306, 333, 416, 656, 811
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	4 cut(s)	489, 559, 613, 1024
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	2 cut(s)	18, 574
BstHHI	GCGC	4 cut(s)	17, 107, 573, 595
BstKTI	GATC	2 cut(s)	252, 372
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	249, 369
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 157, 546, 963
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	80, 628, 731
BstV2I	GAAGAC	1 cut(s)	1113
BsuRI	GGCC	3 cut(s)	151, 347, 966
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	4 cut(s)	489, 559, 613, 1024
BtsI	GCAGTG	2 cut(s)	547, 781
BtsIMutI	CAGTG	3 cut(s)	508, 547, 781
Cac8I	GCNNGC	4 cut(s)	98, 158, 575, 662
CfoI	GCGC	4 cut(s)	17, 107, 573, 595
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	4 cut(s)	212, 320, 346, 965
CseI	GACGC	1 cut(s)	806
Csp6I	GTAC	3 cut(s)	78, 759, 1051
CviAII	CATG	5 cut(s)	217, 493, 565, 850, 1066
CviQI	GTAC	3 cut(s)	78, 759, 1051
DdeI	CTNAG	5 cut(s)	306, 333, 416, 656, 811
DinI	GGCGCC	1 cut(s)	16
DpnI	GATC	2 cut(s)	251, 371
DpnII	GATC	2 cut(s)	249, 369
DraI	TTTAAA	1 cut(s)	472
Eam1104I	CTCTTC	4 cut(s)	434, 440, 450, 827
EarI	CTCTTC	4 cut(s)	434, 440, 450, 827
EciI	GGCGGA	2 cut(s)	34, 894
Ecl136II	GAGCTC	1 cut(s)	660
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	662
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	212, 320
Eco53kI	GAGCTC	1 cut(s)	660
Eco57I	CTGAAG	2 cut(s)	603, 1029
EcoICRI	GAGCTC	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	662
EgeI	GGCGCC	1 cut(s)	16
EheI	GGCGCC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	5 cut(s)	220, 496, 568, 853, 1069
FaiI	YATR	9 cut(s)	218, 230, 494, 566, 653, 851, 947, 992, 1067
FaqI	GGGAC	3 cut(s)	198, 572, 937
FatI	CATG	5 cut(s)	216, 492, 564, 849, 1065
FauI	CCCGC	2 cut(s)	32, 542
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	48, 94, 297, 617, 745
FokI	GGATG	4 cut(s)	496, 566, 620, 1031
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	5 cut(s)	48, 94, 297, 617, 745
FspBI	CTAG	2 cut(s)	756, 762
GlaI	GCGC	4 cut(s)	16, 106, 572, 594
GluI	GCNGC	5 cut(s)	48, 94, 297, 617, 745
GsaI	CCCAGC	1 cut(s)	593
HaeII	RGCGCY	2 cut(s)	18, 574
HaeIII	GGCC	3 cut(s)	151, 347, 966
HapII	CCGG	2 cut(s)	12, 157
HgaI	GACGC	1 cut(s)	806
HhaI	GCGC	4 cut(s)	17, 107, 573, 595
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	5 cut(s)	220, 496, 568, 853, 1069
Hin6I	GCGC	4 cut(s)	15, 105, 571, 593
HinP1I	GCGC	4 cut(s)	15, 105, 571, 593
HincII	GTYRAC	2 cut(s)	499, 648
HindII	GTYRAC	2 cut(s)	499, 648
HinfI	GANTC	5 cut(s)	329, 506, 530, 1000, 1022
HpaII	CCGG	2 cut(s)	12, 157
HphI	GGTGA	1 cut(s)	1115
Hpy166II	GTNNAC	4 cut(s)	194, 499, 562, 648
Hpy188I	TCNGA	8 cut(s)	146, 309, 376, 529, 732, 821, 1009, 1038
Hpy188III	TCNNGA	5 cut(s)	253, 335, 632, 677, 873
Hpy8I	GTNNAC	4 cut(s)	194, 499, 562, 648
Hpy99I	CGWCG	2 cut(s)	185, 188
HpyCH4III	ACNGT	4 cut(s)	198, 503, 691, 928
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	8 cut(s)	383, 577, 616, 747, 768, 849, 864, 957
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 157, 546, 963
HpyF3I	CTNAG	5 cut(s)	306, 333, 416, 656, 811
HpySE526I	ACGT	1 cut(s)	190
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	220, 496, 568, 853, 1069
HspAI	GCGC	4 cut(s)	15, 105, 571, 593
KasI	GGCGCC	1 cut(s)	14
KflI	GGGWCCC	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	156
KroNI	GCCGGC	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	249, 369
LmnI	GCTCC	1 cut(s)	881
Lsp1109I	GCAGC	3 cut(s)	80, 628, 731
LweI	GCATC	2 cut(s)	544, 650
MaeI	CTAG	2 cut(s)	756, 762
MaeII	ACGT	1 cut(s)	190
MalI	GATC	2 cut(s)	251, 371
MboI	GATC	2 cut(s)	249, 369
MboII	GAAGA	8 cut(s)	268, 271, 451, 457, 467, 844, 1082, 1118
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	662, 989
Mly113I	GGCGCC	1 cut(s)	15
MmeI	TCCRAC	2 cut(s)	799, 1061
MroNI	GCCGGC	1 cut(s)	156
MseI	TTAA	3 cut(s)	398, 471, 1097
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	2 cut(s)	12, 157
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	746
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	102, 157, 546, 963
NaeI	GCCGGC	1 cut(s)	158
NarI	GGCGCC	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	2 cut(s)	249, 369
NgoMIV	GCCGGC	1 cut(s)	156
NlaIII	CATG	5 cut(s)	220, 496, 568, 853, 1069
NlaIV	GGNNCC	4 cut(s)	16, 213, 214, 348
NmeAIII	GCCGAG	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	151
PctI	GAATGC	1 cut(s)	746
PdiI	GCCGGC	1 cut(s)	158
PfeI	GAWTC	5 cut(s)	329, 506, 530, 1000, 1022
PkrI	GCNGC	5 cut(s)	49, 95, 298, 618, 746
PluTI	GGCGCC	1 cut(s)	18
PpuMI	RGGWCCY	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	662
Psp5II	RGGWCCY	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	589
PspN4I	GGNNCC	4 cut(s)	16, 213, 214, 348
PspPI	GGNCC	4 cut(s)	212, 320, 346, 965
PspPPI	RGGWCCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	3 cut(s)	79, 760, 1052
RsaNI	GTAC	3 cut(s)	78, 759, 1051
SacI	GAGCTC	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	398, 471, 1097
SatI	GCNGC	5 cut(s)	48, 94, 297, 617, 745
Sau3AI	GATC	2 cut(s)	249, 369
Sau96I	GGNCC	4 cut(s)	212, 320, 346, 965
ScaI	AGTACT	1 cut(s)	760
SduI	GDGCHC	2 cut(s)	662, 989
SfaNI	GCATC	2 cut(s)	544, 650
SfoI	GGCGCC	1 cut(s)	16
SinI	GGWCC	2 cut(s)	212, 320
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SpeI	ACTAGT	2 cut(s)	755, 761
SseBI	AGGCCT	1 cut(s)	151
SspDI	GGCGCC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	756, 762
SstI	GAGCTC	1 cut(s)	662
StuI	AGGCCT	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	4 cut(s)	198, 503, 691, 928
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	6 cut(s)	57, 284, 533, 693, 983, 1025
TatI	WGTACW	2 cut(s)	758, 1050
TauI	GCSGC	2 cut(s)	50, 299
TfiI	GAWTC	5 cut(s)	329, 506, 530, 1000, 1022
Tru1I	TTAA	3 cut(s)	398, 471, 1097
Tru9I	TTAA	3 cut(s)	398, 471, 1097
TscAI	CASTG	3 cut(s)	508, 547, 781
TseI	GCWGC	3 cut(s)	93, 616, 744
TspDTI	ATGAA	4 cut(s)	245, 278, 500, 581
TspGWI	ACGGA	2 cut(s)	24, 201
TspRI	CASTG	3 cut(s)	508, 547, 781
VpaK11BI	GGWCC	2 cut(s)	212, 320
XapI	RAATTY	3 cut(s)	122, 166, 896
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	2 cut(s)	756, 762
ZrmI	AGTACT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.