Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013525

Physical Location & Seq

Genomic Coordinates Reverse (-)

8330442 .. 8331905

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGGTCTCCGGCGTCGTTTCCCGCCAAGTTCAGTGCTTTTCCGCCGCTAAAATCGACACCACCTCCCGTTCTTGTACAGCGTCGTTTAACTGTGAGCTTCGCGTTCTGGGTCGTCGAGATTTTGGAGTTTCACTGAGAACCAGAAGGCCTCGCCGGCATTTGAATTCCGGGTTTAGCGACGACGGACATTTACAGTATTATCAGGCGGGTCCCATGTGCATTGGTATGAAGGAGAAGGAGAAGGAGATCAAGAAGAAGGTGAAGTTGCTCAAAGGGTTGTCGAAGGACTTGGCGGCGTATTCTCAGATGGGTTTTGGACTGTTGGGTTCTCAAGAGGGTTTGGTCGCTCAACTTCAGGGGAAGCTGATCTCGGAAGGTGCTGAGGAATTATTGCTAAAACAATTGGAACAGTTAAGAGCAGAGGAGAAGGAATTGAAGAAGAAGAGGAAAGAAGAGAAGGCAAGGCTTAAAGCCGAGCGGATGAAAACCATGGTTGACACTGAATCATCATCGTCTTCATCGTCTGAATCAAGTGAAAGTGAGTGCGGGGAGGTAGTAGACATGAAGCGCCTGCAAAGTGAAGTCCCGACGCAACCAATTGTAGATAATTTGCAGCCATTTGCTCATCAAGAAGGGGGATTGTTGACCATACTAAGCTCGCTAGCTACTCATCAAGAGAACACAACTGTGGAAAATGGCATTGATTTTGGAAGTTCACAGATAGATCAGAAAGCAGAATGCTATAATGGAACTATTACTAGTTGTGGCAGTAGCGGTAGTATTGGCGTTAATGAGTCTTTAAGTAGCGCAGTTGTCGGAGTTTCGGCAAAGAAGATTGAGGTGTGCATGGGAAACAAGTGCAAGAAATCAGGAGGCGGAGCATTGTTGGAAGAATTCGAGAGGCAGATGGGCGGTGAAGGAGCTGTTGTAGGGTGCAAGTGTATGGGAAAATGCAAAAACGGACCTAATGTGAGGGTTTCAACCGCTGTTGGCGGGATTCAATCCGAAGGAATGGATGACTCTGTCAGAAGTCCGACGAATCCTTTGTACATTGGAGTTGGCCTGGAAGATGTGAGTCTCATTGTGGCTAATTTAATTGGGGAGGAAAACAAGGATCTGGACCTTGTTTCTGCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

40.85

Weight (kDa)

6.22

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48300
fragaria_vesca	FvH4_4g21650 FvH4_4g21660
malus_domestica	MD13G1156700.v1.1 MD16G1134300.v1.1
prunus_persica	Prupe.1G103600_v2.0.a1 Prupe.1G103600_v2.0.a1
pyrus_communis	pycom13g12050 pycom16g11860
rosa_chinensis	RchiOBHm_Chr4g0427881
rosa_multiflora	Rmu_co8387153.1_g000001 Rmu_sc0000066.1_g000016
rosa_roxburghii	Rroxscaffold_5G00369530
rosa_rugosa	Rorug04G0220200
rosa_samantha	Rh4AG277200 Rh4BG283000 Rh4DG280100
rosa_wichuraiana	Rw4G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	105
AclWI	GGATC	1 cut(s)	1125
AcsI	RAATTY	2 cut(s)	166, 896
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	79, 1052
AgsI	TTSAA	4 cut(s)	166, 439, 984, 1004
AhlI	ACTAGT	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	1065
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	5 cut(s)	100, 367, 660, 668, 926
AluI	AGCT	5 cut(s)	100, 367, 660, 668, 926
Alw26I	GTCTC	2 cut(s)	13, 1085
AlwI	GGATC	1 cut(s)	1125
AoxI	GGCC	2 cut(s)	149, 1063
ApeKI	GCWGC	1 cut(s)	616
ApoI	RAATTY	2 cut(s)	166, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	1030, 1062
AspLEI	GCGC	2 cut(s)	573, 812
AspS9I	GGNCC	3 cut(s)	212, 965, 1123
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	274, 929
AsuNHI	GCTAGC	1 cut(s)	664
AvaII	GGWCC	3 cut(s)	212, 965, 1123
BbsI	GAAGAC	1 cut(s)	510
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	2 cut(s)	304, 904
BciT130I	CCWGG	1 cut(s)	1067
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	13, 1085
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	2 cut(s)	665, 762
BfoI	RGCGCY	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	157
BisI	GCNGC	4 cut(s)	48, 297, 617, 1137
BlsI	GCNGC	4 cut(s)	49, 298, 618, 1138
Bme1390I	CCNGG	2 cut(s)	172, 1067
Bme18I	GGWCC	3 cut(s)	212, 965, 1123
BmgT120I	GGNCC	3 cut(s)	212, 965, 1123
BmiI	GGNNCC	2 cut(s)	213, 214
BmrFI	CCNGG	2 cut(s)	172, 1067
BmtI	GCTAGC	1 cut(s)	668
BpiI	GAAGAC	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	492
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 915, 945
Bse118I	RCCGGY	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	1067
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	489, 1024
BseMII	CTCAG	3 cut(s)	128, 320, 375
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	628
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	151, 1065
BsiSI	CCGG	3 cut(s)	12, 157, 171
BslFI	GGGAC	2 cut(s)	198, 572
BsmAI	GTCTC	2 cut(s)	13, 1085
BsmFI	GGGAC	2 cut(s)	198, 572
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	2 cut(s)	151, 1065
Bso31I	GGTCTC	1 cut(s)	13
Bsp1407I	TGTACA	2 cut(s)	77, 1050
Bsp143I	GATC	4 cut(s)	249, 369, 727, 1117
Bsp19I	CCATGG	1 cut(s)	492
BspANI	GGCC	2 cut(s)	151, 1065
BspCNI	CTCAG	3 cut(s)	129, 319, 376
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	213, 214
BspOI	GCTAGC	1 cut(s)	668
BspPI	GGATC	1 cut(s)	1125
BspTNI	GGTCTC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	156
BsrGI	TGTACA	2 cut(s)	77, 1050
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	4 cut(s)	249, 369, 727, 1117
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	1067
Bst4CI	ACNGT	5 cut(s)	95, 198, 324, 414, 691
Bst6I	CTCTTC	2 cut(s)	440, 450
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	2 cut(s)	77, 1050
BstC8I	GCNNGC	4 cut(s)	158, 575, 662, 666
BstDEI	CTNAG	4 cut(s)	137, 306, 384, 656
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	489, 1024
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	574
BstHHI	GCGC	2 cut(s)	573, 812
BstKTI	GATC	4 cut(s)	252, 372, 730, 1120
BstMAI	GTCTC	2 cut(s)	13, 1085
BstMBI	GATC	4 cut(s)	249, 369, 727, 1117
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	1067
BstSCI	CCNGG	2 cut(s)	170, 1065
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	1117
BstYI	RGATCY	1 cut(s)	1117
BsuRI	GGCC	2 cut(s)	151, 1065
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	489, 1024
BtsIMutI	CAGTG	3 cut(s)	41, 134, 501
Cac8I	GCNNGC	4 cut(s)	158, 575, 662, 666
CfoI	GCGC	2 cut(s)	573, 812
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	3 cut(s)	212, 965, 1123
CseI	GACGC	3 cut(s)	4, 72, 601
Csp6I	GTAC	2 cut(s)	78, 1051
CviAII	CATG	4 cut(s)	217, 493, 565, 850
CviQI	GTAC	2 cut(s)	78, 1051
DdeI	CTNAG	4 cut(s)	137, 306, 384, 656
DpnI	GATC	4 cut(s)	251, 371, 729, 1119
DpnII	GATC	4 cut(s)	249, 369, 727, 1117
Eam1104I	CTCTTC	2 cut(s)	440, 450
EarI	CTCTTC	2 cut(s)	440, 450
EciI	GGCGGA	2 cut(s)	34, 894
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	3 cut(s)	212, 965, 1123
Eco57I	CTGAAG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRI	GAATTC	2 cut(s)	166, 896
EcoRII	CCWGG	1 cut(s)	1065
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	4 cut(s)	220, 496, 568, 853
FaiI	YATR	8 cut(s)	218, 230, 494, 566, 653, 747, 851, 947
FaqI	GGGAC	2 cut(s)	198, 572
FatI	CATG	4 cut(s)	216, 492, 564, 849
FauI	CCCGC	4 cut(s)	32, 202, 542, 989
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	48, 297, 617, 1137
FokI	GGATG	2 cut(s)	496, 1031
Fsp4HI	GCNGC	4 cut(s)	48, 297, 617, 1137
FspBI	CTAG	2 cut(s)	665, 762
GlaI	GCGC	2 cut(s)	572, 811
GluI	GCNGC	4 cut(s)	48, 297, 617, 1137
HaeII	RGCGCY	1 cut(s)	574
HaeIII	GGCC	2 cut(s)	151, 1065
HapII	CCGG	3 cut(s)	12, 157, 171
HgaI	GACGC	3 cut(s)	4, 72, 601
HhaI	GCGC	2 cut(s)	573, 812
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	220, 496, 568, 853
Hin6I	GCGC	2 cut(s)	571, 810
HinP1I	GCGC	2 cut(s)	571, 810
HincII	GTYRAC	2 cut(s)	499, 648
HindII	GTYRAC	2 cut(s)	499, 648
HinfI	GANTC	7 cut(s)	506, 530, 797, 1000, 1022, 1042, 1078
HpaII	CCGG	3 cut(s)	12, 157, 171
HphI	GGTGA	2 cut(s)	274, 929
Hpy166II	GTNNAC	4 cut(s)	499, 562, 648, 719
Hpy188I	TCNGA	8 cut(s)	309, 376, 529, 732, 821, 1009, 1031, 1038
Hpy188III	TCNNGA	9 cut(s)	119, 253, 335, 589, 632, 677, 873, 901, 1121
Hpy8I	GTNNAC	4 cut(s)	499, 562, 648, 719
Hpy99I	CGWCG	7 cut(s)	20, 88, 120, 185, 188, 595, 1042
HpyCH4III	ACNGT	5 cut(s)	95, 198, 324, 414, 691
HpyCH4V	TGCA	7 cut(s)	222, 577, 616, 849, 864, 939, 957
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	4 cut(s)	137, 306, 384, 656
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	220, 496, 568, 853
HspAI	GCGC	2 cut(s)	571, 810
KflI	GGGWCCC	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	156
KroNI	GCCGGC	1 cut(s)	158
Kzo9I	GATC	4 cut(s)	249, 369, 727, 1117
LmnI	GCTCC	2 cut(s)	881, 923
Lsp1109I	GCAGC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	665, 762
MalI	GATC	4 cut(s)	251, 371, 729, 1119
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	4 cut(s)	249, 369, 727, 1117
MboII	GAAGA	9 cut(s)	268, 451, 454, 457, 467, 510, 847, 905, 1082
MfeI	CAATTG	2 cut(s)	404, 600
MflI	RGATCY	1 cut(s)	1117
MluCI	AATT	9 cut(s)	166, 389, 404, 434, 600, 610, 896, 1093, 1098
MlyI	GAGTC	3 cut(s)	806, 1016, 1087
MmeI	TCCRAC	3 cut(s)	799, 870, 1061
MroNI	GCCGGC	1 cut(s)	156
MseI	TTAA	7 cut(s)	90, 416, 471, 792, 803, 1097, 1141
MslI	CAYNNNNRTG	2 cut(s)	227, 689
MspA1I	CMGCKG	1 cut(s)	989
MspI	CCGG	3 cut(s)	12, 157, 171
MspR9I	CCNGG	2 cut(s)	172, 1067
MunI	CAATTG	2 cut(s)	404, 600
Mva1269I	GAATGC	1 cut(s)	746
MvaI	CCWGG	1 cut(s)	1067
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	157
NaeI	GCCGGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	172
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	4 cut(s)	249, 369, 727, 1117
NgoMIV	GCCGGC	1 cut(s)	156
NheI	GCTAGC	1 cut(s)	664
NlaIII	CATG	4 cut(s)	220, 496, 568, 853
NlaIV	GGNNCC	2 cut(s)	213, 214
NmeAIII	GCCGAG	1 cut(s)	502
OliI	CACNNNNGTG	1 cut(s)	689
PceI	AGGCCT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	521
PctI	GAATGC	1 cut(s)	746
PdiI	GCCGGC	1 cut(s)	158
PfeI	GAWTC	4 cut(s)	506, 530, 1000, 1042
PflFI	GACNNNGTC	1 cut(s)	1025
PkrI	GCNGC	4 cut(s)	49, 298, 618, 1138
PleI	GAGTC	3 cut(s)	805, 1016, 1086
PpsI	GAGTC	3 cut(s)	805, 1016, 1086
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	1065
PspGI	CCWGG	1 cut(s)	1065
PspN4I	GGNNCC	2 cut(s)	213, 214
PspPI	GGNCC	3 cut(s)	212, 965, 1123
PspPPI	RGGWCCY	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	1117
PsyI	GACNNNGTC	1 cut(s)	1025
RsaI	GTAC	2 cut(s)	79, 1052
RsaNI	GTAC	2 cut(s)	78, 1051
RseI	CAYNNNNRTG	2 cut(s)	227, 689
SaqAI	TTAA	7 cut(s)	90, 416, 471, 792, 803, 1097, 1141
SatI	GCNGC	4 cut(s)	48, 297, 617, 1137
Sau3AI	GATC	4 cut(s)	249, 369, 727, 1117
Sau96I	GGNCC	3 cut(s)	212, 965, 1123
SchI	GAGTC	3 cut(s)	806, 1016, 1087
ScrFI	CCNGG	2 cut(s)	172, 1067
SinI	GGWCC	3 cut(s)	212, 965, 1123
SmiMI	CAYNNNNRTG	2 cut(s)	227, 689
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	761
Sse9I	AATT	9 cut(s)	166, 389, 404, 434, 600, 610, 896, 1093, 1098
SseBI	AGGCCT	1 cut(s)	151
SspMI	CTAG	2 cut(s)	665, 762
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	170, 1065
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	5 cut(s)	95, 198, 324, 414, 691
TaqI	TCGA	4 cut(s)	57, 118, 284, 900
TasI	AATT	9 cut(s)	166, 389, 404, 434, 600, 610, 896, 1093, 1098
TatI	WGTACW	2 cut(s)	77, 1050
TauI	GCSGC	3 cut(s)	50, 299, 1139
TfiI	GAWTC	4 cut(s)	506, 530, 1000, 1042
Tru1I	TTAA	7 cut(s)	90, 416, 471, 792, 803, 1097, 1141
Tru9I	TTAA	7 cut(s)	90, 416, 471, 792, 803, 1097, 1141
TscAI	CASTG	3 cut(s)	41, 141, 508
TseI	GCWGC	1 cut(s)	616
TspDTI	ATGAA	4 cut(s)	245, 500, 510, 581
TspGWI	ACGGA	2 cut(s)	201, 978
TspRI	CASTG	3 cut(s)	41, 141, 508
Tth111I	GACNNNGTC	1 cut(s)	1025
VpaK11BI	GGWCC	3 cut(s)	212, 965, 1123
XapI	RAATTY	2 cut(s)	166, 896
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	2 cut(s)	665, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.