Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387153.1

Orthogroup ID

OG0013525

Physical Location & Seq

Genomic Coordinates Forward (+)

836 .. 1192

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387153.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggaggtttctggattagtttcccgccaagttccatgcttttccggtgccggaatcgatacccggtcttcaaattcatcgttttccggcgacgtccactttccgggtcgtaatgaatttggagtgagtctgaggacccgaagggctatgaattctgggttttgtgataaggggcatgtggagtattattattcggttcccagatgcggtggtaataagaaggagaaggagatcaagaagaaattgaagttgcttaaaggattggcggagctgtctgcgtcttctcagattagtactgggttggattccgaggagggtttggctgctcaagttcaggggaagctgatttcggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.7

Weight (kDa)

9.27

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48300
fragaria_vesca	FvH4_4g21650 FvH4_4g21660
malus_domestica	MD13G1156700.v1.1 MD16G1134300.v1.1
prunus_persica	Prupe.1G103600_v2.0.a1 Prupe.1G103600_v2.0.a1
pyrus_communis	pycom13g12050 pycom16g11860
rosa_chinensis	RchiOBHm_Chr4g0427881
rosa_multiflora	Rmu_co8387153.1_g000001 Rmu_sc0000066.1_g000016
rosa_roxburghii	Rroxscaffold_5G00369530
rosa_rugosa	Rorug04G0220200
rosa_samantha	Rh4AG277200 Rh4BG283000 Rh4DG280100
rosa_wichuraiana	Rw4G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	47
AciI	CCGC	3 cut(s)	25, 207, 266
AcsI	RAATTY	3 cut(s)	73, 116, 151
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	103, 206
AgsI	TTSAA	2 cut(s)	72, 247
AluBI	AGCT	2 cut(s)	271, 343
AluI	AGCT	2 cut(s)	271, 343
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	73, 116, 151
AspS9I	GGNCC	1 cut(s)	135
AsuC2I	CCSGG	2 cut(s)	64, 105
AvaII	GGWCC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	47
BbsI	GAAGAC	2 cut(s)	60, 273
BbvI	GCAGC	1 cut(s)	310
BcnI	CCSGG	2 cut(s)	64, 105
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	64, 105
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	3 cut(s)	49, 137, 198
BmrFI	CCNGG	2 cut(s)	64, 105
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	60, 273
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	2 cut(s)	64, 105
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 206
Bse1I	ACTGG	1 cut(s)	301
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	103, 206
BseMII	CTCAG	2 cut(s)	122, 299
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	5 cut(s)	45, 51, 64, 87, 104
BslI	CCNNNNNNNGG	2 cut(s)	103, 206
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	3 cut(s)	25, 207, 266
BspCNI	CTCAG	2 cut(s)	123, 298
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	3 cut(s)	49, 137, 198
BspT107I	GGYRCC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	131, 285
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	62, 103
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	2 cut(s)	60, 273
Bsu15I	ATCGAT	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	135
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	2 cut(s)	36, 176
CviJI	RGCY	4 cut(s)	146, 271, 323, 343
CviKI_1	RGCY	4 cut(s)	146, 271, 323, 343
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	2 cut(s)	131, 285
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	151
FaeI	CATG	2 cut(s)	39, 179
FaiI	YATR	4 cut(s)	37, 149, 177, 355
FatI	CATG	2 cut(s)	35, 175
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	324
HapII	CCGG	5 cut(s)	45, 51, 64, 87, 104
HgaI	GACGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	39, 179
HinfI	GANTC	3 cut(s)	54, 127, 305
HpaII	CCGG	5 cut(s)	45, 51, 64, 87, 104
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	132, 288, 310
Hpy188III	TCNNGA	2 cut(s)	12, 235
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	135, 214, 220
HpyCH4IV	ACGT	1 cut(s)	93
HpyF3I	CTNAG	2 cut(s)	131, 285
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	39, 179
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	58, 64, 77, 100, 117, 141, 214, 282, 320
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	194
MaeII	ACGT	1 cut(s)	93
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	3 cut(s)	60, 250, 273
MluCI	AATT	4 cut(s)	73, 116, 151, 242
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	3 cut(s)	126, 304, 307
MseI	TTAA	1 cut(s)	255
MspI	CCGG	5 cut(s)	45, 51, 64, 87, 104
MspR9I	CCNGG	2 cut(s)	64, 105
NciI	CCSGG	2 cut(s)	64, 105
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	39, 179
NlaIV	GGNNCC	3 cut(s)	49, 137, 198
NspI	RCATGY	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	54, 305
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	49, 137, 198
PspPI	GGNCC	1 cut(s)	135
PspPPI	RGGWCCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	135
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	64, 105
SetI	ASST	4 cut(s)	9, 96, 273, 345
SfaNI	GCATC	1 cut(s)	194
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	4 cut(s)	73, 116, 151, 242
SsiI	CCGC	3 cut(s)	25, 207, 266
StyD4I	CCNGG	2 cut(s)	62, 103
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	57
TasI	AATT	4 cut(s)	73, 116, 151, 242
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	54, 305
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	66, 129, 164
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	3 cut(s)	73, 116, 151
XceI	RCATGY	1 cut(s)	179
ZraI	GACGTC	1 cut(s)	94
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.