Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013525

Physical Location & Seq

Genomic Coordinates Forward (+)

51359903 .. 51361705

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGGTTTCTGGATTAGTTTCCCGCCAAGTTCCGTGCTTTTCCGGCGCCGGAATCGATACCCGGTCTGCAAATTCATCGTTTTCCGGCGACGTCCACTTTCCGGGTCGTAATGAATTTGGAGTGGGTTTGAGGACCCGAAGGGCTATGAGTTCTGGGTTTTGCGATAAGGGACATGTGGAGTATTATTATTTGGGTCCCAGATGCGGTGGTAATAAGAAGGAGAAGGAGATCAAGAAGAAATTGAAGTTGCTTAAAGGATTGTCGGAGCTGTCTGCGTCTTCTCAGATTAGTACTGGGTTGGATTCCGAGGAGGGTTTGGCTGCTCAAGTTCAGGGGAAGCTGATTTCGGAAGGTGCAGAAGCATTGCTACAGAAATTGGAACAGGTAAGAGCTGAGGAGAAGGAGTTGAAGAAAAAGAAGAAAGAAGAGAAGGAGAGGCTTAAAGCAGAGCGGATGAAAACCATGAAGGACTGTGAATCGTCATCTTCTTCATCTGAGTCGAGTGAGAGTGAATGTGGGGAGGTGGTTGACATGAACAGCCTGAGAGGTGAGGTCCCTGCACAACCGATACTAGAGGGTTTGCAGTTATCGACCCAAGGAGGGCTGGCATTATTGACCCAGCCGAGTTCGGTAACCACACTTCAAGAAGATAAATGCTGCACTGGAGCTAGTACTAGTTGTGGCAGCAGTGATAGTATTGGTCCTAACAATGCGGCTAGTAGCTCGGTTATGGAAGCATCTGTTGTGACGAAGATTGAAGTATGCATGGGCAAAAAGTGCAAGACATCAGGAGGTGTAGCCTTGTTGGAAGAATTCGAGAGGTTGATGGGTGTCGAAGGAAGTGTTGTCGGGTGCAAGTGTATGGGAAAATGCAAAAATGGTCCGAATGTGAGGGTTTTGAATTCTCTGGATGAGATTGAATCCGAAGAAGGAACAGAGGACTCTGTAAGGAATCCCACTAATCCTTTGTACATTGGAGTGGGCCTGGAAGATGTGAGCCTCATCGTGGCCAACTTAATGGGGGAAGTCAAGAAGGATTTGGGCATTGCCACTGCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

37.61

Weight (kDa)

5.4

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48300
fragaria_vesca	FvH4_4g21650 FvH4_4g21660
malus_domestica	MD13G1156700.v1.1 MD16G1134300.v1.1
prunus_persica	Prupe.1G103600_v2.0.a1 Prupe.1G103600_v2.0.a1
pyrus_communis	pycom13g12050 pycom16g11860
rosa_chinensis	RchiOBHm_Chr4g0427881
rosa_multiflora	Rmu_co8387153.1_g000001 Rmu_sc0000066.1_g000016
rosa_roxburghii	Rroxscaffold_5G00369530
rosa_rugosa	Rorug04G0220200
rosa_samantha	Rh4AG277200 Rh4BG283000 Rh4DG280100
rosa_wichuraiana	Rw4G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	47
AccBSI	CCGCTC	1 cut(s)	454
AciI	CCGC	4 cut(s)	25, 207, 454, 716
AcoI	YGGCCR	1 cut(s)	1011
AcsI	RAATTY	4 cut(s)	73, 116, 815, 904
AcyI	GRCGYC	2 cut(s)	48, 93
AfaI	GTAC	3 cut(s)	295, 676, 974
AfiI	CCNNNNNNNGG	4 cut(s)	103, 206, 603, 1009
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	6 cut(s)	247, 412, 647, 761, 904, 923
AhlI	ACTAGT	1 cut(s)	677
AjnI	CCWGG	1 cut(s)	987
AluBI	AGCT	5 cut(s)	271, 343, 395, 671, 726
AluI	AGCT	5 cut(s)	271, 343, 395, 671, 726
AoxI	GGCC	2 cut(s)	985, 1011
ApeKI	GCWGC	3 cut(s)	323, 660, 687
ApoI	RAATTY	4 cut(s)	73, 116, 815, 904
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	6 cut(s)	135, 197, 556, 704, 884, 985
AsuC2I	CCSGG	2 cut(s)	64, 105
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	5 cut(s)	135, 197, 556, 704, 884
BalI	TGGCCA	1 cut(s)	1013
BanI	GGYRCC	1 cut(s)	47
BarI	GAAGNNNNNNTAC	4 cut(s)	354, 386, 627, 659
BbsI	GAAGAC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	310, 647, 699
BccI	CCATC	1 cut(s)	823
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	1 cut(s)	989
BcnI	CCSGG	2 cut(s)	64, 105
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	4 cut(s)	575, 672, 678, 720
BfmI	CTRYAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	4 cut(s)	324, 661, 688, 717
BlsI	GCNGC	4 cut(s)	325, 662, 689, 718
BmcAI	AGTACT	2 cut(s)	295, 676
Bme1390I	CCNGG	3 cut(s)	64, 105, 989
Bme18I	GGWCC	5 cut(s)	135, 197, 556, 704, 884
BmgT120I	GGNCC	6 cut(s)	135, 197, 556, 704, 884, 985
BmiI	GGNNCC	5 cut(s)	49, 137, 198, 199, 558
BmrFI	CCNGG	3 cut(s)	64, 105, 989
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	194, 749
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	2 cut(s)	64, 105
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	48, 93
BsaJI	CCNNGG	2 cut(s)	309, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 206, 603, 1009
Bse1I	ACTGG	2 cut(s)	301, 670
Bse3DI	GCAATG	2 cut(s)	365, 1047
BseBI	CCWGG	1 cut(s)	989
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	309, 598
BseGI	GGATG	2 cut(s)	462, 919
BseLI	CCNNNNNNNGG	4 cut(s)	103, 206, 603, 1009
BseMI	GCAATG	2 cut(s)	365, 1047
BseMII	CTCAG	4 cut(s)	299, 387, 489, 536
BseNI	ACTGG	2 cut(s)	301, 670
BseRI	GAGGAG	2 cut(s)	326, 413
BseXI	GCAGC	3 cut(s)	310, 647, 699
BseYI	CCCAGC	1 cut(s)	621
BsgI	GTGCAG	3 cut(s)	378, 546, 646
BshFI	GGCC	2 cut(s)	987, 1013
BshNI	GGYRCC	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	5 cut(s)	45, 51, 64, 87, 104
BslFI	GGGAC	3 cut(s)	183, 186, 542
BslI	CCNNNNNNNGG	4 cut(s)	103, 206, 603, 1009
BsmFI	GGGAC	3 cut(s)	183, 186, 542
BsnI	GGCC	2 cut(s)	987, 1013
Bsp1407I	TGTACA	1 cut(s)	972
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	4 cut(s)	25, 207, 454, 716
BspANI	GGCC	2 cut(s)	987, 1013
BspCNI	CTCAG	4 cut(s)	298, 388, 490, 537
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	5 cut(s)	49, 137, 198, 199, 558
BspT107I	GGYRCC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	454
BsrDI	GCAATG	2 cut(s)	365, 1047
BsrGI	TGTACA	1 cut(s)	972
BsrI	ACTGG	2 cut(s)	301, 670
BssECI	CCNNGG	2 cut(s)	309, 598
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	2 cut(s)	48, 93
BssT1I	CCWWGG	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	989
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	2 cut(s)	48, 93
BstAPI	GCANNNNNTGC	1 cut(s)	780
BstAUI	TGTACA	1 cut(s)	972
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	5 cut(s)	285, 396, 498, 545, 1062
BstEII	GGTNACC	1 cut(s)	634
BstF5I	GGATG	2 cut(s)	462, 919
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 780
BstNI	CCWGG	1 cut(s)	989
BstNSI	RCATGY	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	634
BstSCI	CCNGG	3 cut(s)	62, 103, 987
BstSFI	CTRYAG	1 cut(s)	371
BstV1I	GCAGC	3 cut(s)	310, 647, 699
BstV2I	GAAGAC	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	1021
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	987, 1013
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	462, 919
BtsI	GCAGTG	2 cut(s)	697, 1053
BtsIMutI	CAGTG	3 cut(s)	663, 697, 1053
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	6 cut(s)	135, 197, 556, 704, 884, 985
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	3 cut(s)	294, 675, 973
CviAII	CATG	4 cut(s)	176, 466, 535, 769
CviQI	GTAC	3 cut(s)	294, 675, 973
DdeI	CTNAG	5 cut(s)	285, 396, 498, 545, 1062
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	1011
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	598
Eco47I	GGWCC	5 cut(s)	135, 197, 556, 704, 884
Eco91I	GGTNACC	1 cut(s)	634
EcoO109I	RGGNCCY	3 cut(s)	135, 197, 556
EcoO65I	GGTNACC	1 cut(s)	634
EcoRI	GAATTC	2 cut(s)	815, 904
EcoRII	CCWGG	1 cut(s)	987
EcoT14I	CCWWGG	1 cut(s)	598
EcoT22I	ATGCAT	1 cut(s)	770
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	4 cut(s)	179, 469, 538, 772
FaiI	YATR	8 cut(s)	149, 177, 467, 536, 734, 766, 770, 866
FaqI	GGGAC	3 cut(s)	183, 186, 542
FatI	CATG	4 cut(s)	175, 465, 534, 768
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	324, 661, 688, 717
FokI	GGATG	2 cut(s)	469, 926
Fsp4HI	GCNGC	4 cut(s)	324, 661, 688, 717
FspBI	CTAG	4 cut(s)	575, 672, 678, 720
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	4 cut(s)	324, 661, 688, 717
GsaI	CCCAGC	1 cut(s)	625
GsuI	CTGGAG	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	987, 1013
HapII	CCGG	5 cut(s)	45, 51, 64, 87, 104
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	48, 93
Hin1II	CATG	4 cut(s)	179, 469, 538, 772
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	7 cut(s)	54, 305, 479, 500, 923, 944, 955
HpaII	CCGG	5 cut(s)	45, 51, 64, 87, 104
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	97, 532
Hpy188I	TCNGA	7 cut(s)	268, 288, 310, 352, 499, 888, 928
Hpy188III	TCNNGA	7 cut(s)	12, 235, 647, 792, 820, 911, 1033
Hpy8I	GTNNAC	2 cut(s)	97, 532
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 780
HpyF3I	CTNAG	5 cut(s)	285, 396, 498, 545, 1062
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	2 cut(s)	48, 93
Hsp92II	CATG	4 cut(s)	179, 469, 538, 772
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
KflI	GGGWCCC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	268, 668
Lsp1109I	GCAGC	3 cut(s)	310, 647, 699
LweI	GCATC	2 cut(s)	194, 749
MaeI	CTAG	4 cut(s)	575, 672, 678, 720
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	634, 748
MalI	GATC	1 cut(s)	233
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	1013
MluCI	AATT	6 cut(s)	73, 116, 242, 377, 815, 904
MluNI	TGGCCA	1 cut(s)	1013
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	509, 938
MmeI	TCCRAC	3 cut(s)	246, 282, 789
Mox20I	TGGCCA	1 cut(s)	1013
Mph1103I	ATGCAT	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	1013
MseI	TTAA	3 cut(s)	255, 444, 1019
MslI	CAYNNNNRTG	1 cut(s)	980
Msp20I	TGGCCA	1 cut(s)	1013
MspI	CCGG	5 cut(s)	45, 51, 64, 87, 104
MspR9I	CCNGG	3 cut(s)	64, 105, 989
MvaI	CCWGG	1 cut(s)	989
MwoI	GCNNNNNNNGC	2 cut(s)	45, 780
NarI	GGCGCC	1 cut(s)	48
NciI	CCSGG	2 cut(s)	64, 105
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	4 cut(s)	179, 469, 538, 772
NlaIV	GGNNCC	5 cut(s)	49, 137, 198, 199, 558
NmeAIII	GCCGAG	1 cut(s)	651
NmuCI	GTSAC	1 cut(s)	748
NsiI	ATGCAT	1 cut(s)	770
NspI	RCATGY	1 cut(s)	179
PciI	ACATGT	1 cut(s)	175
PfeI	GAWTC	5 cut(s)	54, 305, 479, 923, 955
PkrI	GCNGC	4 cut(s)	325, 662, 689, 718
PleI	GAGTC	2 cut(s)	508, 938
PluTI	GGCGCC	1 cut(s)	51
PpsI	GAGTC	2 cut(s)	508, 938
PpuMI	RGGWCCY	3 cut(s)	135, 197, 556
PscI	ACATGT	1 cut(s)	175
Psp5II	RGGWCCY	3 cut(s)	135, 197, 556
Psp6I	CCWGG	1 cut(s)	987
PspEI	GGTNACC	1 cut(s)	634
PspFI	CCCAGC	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	987
PspN4I	GGNNCC	5 cut(s)	49, 137, 198, 199, 558
PspPI	GGNCC	6 cut(s)	135, 197, 556, 704, 884, 985
PspPPI	RGGWCCY	3 cut(s)	135, 197, 556
RsaI	GTAC	3 cut(s)	295, 676, 974
RsaNI	GTAC	3 cut(s)	294, 675, 973
RseI	CAYNNNNRTG	1 cut(s)	980
SaqAI	TTAA	3 cut(s)	255, 444, 1019
SatI	GCNGC	4 cut(s)	324, 661, 688, 717
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	6 cut(s)	135, 197, 556, 704, 884, 985
ScaI	AGTACT	2 cut(s)	295, 676
SchI	GAGTC	2 cut(s)	509, 938
ScrFI	CCNGG	3 cut(s)	64, 105, 989
SfaNI	GCATC	2 cut(s)	194, 749
SfcI	CTRYAG	1 cut(s)	371
SfoI	GGCGCC	1 cut(s)	49
SinI	GGWCC	5 cut(s)	135, 197, 556, 704, 884
SmiMI	CAYNNNNRTG	1 cut(s)	980
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	6 cut(s)	73, 116, 242, 377, 815, 904
SsiI	CCGC	4 cut(s)	25, 207, 454, 716
SspDI	GGCGCC	1 cut(s)	47
SspMI	CTAG	4 cut(s)	575, 672, 678, 720
StyD4I	CCNGG	3 cut(s)	62, 103, 987
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	5 cut(s)	57, 503, 593, 819, 837
TasI	AATT	6 cut(s)	73, 116, 242, 377, 815, 904
TatI	WGTACW	3 cut(s)	293, 674, 972
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	5 cut(s)	54, 305, 479, 923, 955
Tru1I	TTAA	3 cut(s)	255, 444, 1019
Tru9I	TTAA	3 cut(s)	255, 444, 1019
TscAI	CASTG	3 cut(s)	670, 697, 1060
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	3 cut(s)	323, 660, 687
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	6 cut(s)	66, 129, 473, 482, 483, 551
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	3 cut(s)	670, 697, 1060
VpaK11BI	GGWCC	5 cut(s)	135, 197, 556, 704, 884
XapI	RAATTY	4 cut(s)	73, 116, 815, 904
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	4 cut(s)	575, 672, 678, 720
ZraI	GACGTC	1 cut(s)	94
ZrmI	AGTACT	2 cut(s)	295, 676
Zsp2I	ATGCAT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.