Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013525

Physical Location & Seq

Genomic Coordinates Reverse (-)

8268238 .. 8270137

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAAGTTTCCGGCGTCGTTTCTCGGCAAGTACCTTGCTTTTCCGGCGCTGAAATCGATACCACTCGGTCTTCTACGGCGTCGTTTCATGGAGAGTTTCGGGTTCAGGGTCGTAGAAATTTTGGAGTGTCTTTGAGAACTAGACGTTTTGGTGGGCAATTGAATTCTGGATTTTGTGATGACGGGCATGTGCAGTATTATCACGTGGGTCCCAGATGTGGTTTTAAGAAGGAGAAGGAGATCAAGAAGAAGCTGAAATTGCTCAAAGGGTTGTCCAAGGACTTGTCCGCGTCTTCTCAGATGGGTTTTGGACCGTTAGATTATCAGAAGGGTTTGGTCGCTCAATTTCAGGAGAAGCTGATCTCGGAAGATGCAGAGGCATTATTACTAAAACAATTGGAGCAGTTAAGAGCAGAGGAGAAGGAATTAAAGAGAAAGAGGAAAGAAGAGAAGGCCAGGCTTAAAGCTGAACGGATGAAAAACATGGTTGACAGTGAATCATCTTCTTCATCATCATCTGAATCAAGTGAAAGTGAATGTGGGGAGTTGGTTGACATGAACCGCCTGAGAAGCGAAGCCCCTGCTAAACCAATACTAGACAGTTTGCAGCCATTTAATCATCAAGAAGGGGCGGTGTTGACCCTGCCGAGCTCATTAGCCATAGCCACTCACCAAGAGAATACCACAGTAGAACATGTCACTGAATTTGGCATTTCACAGAATCAGGAAGCAGAATGCTGCTCAGGAACTAGTACAAGTTGTGTCAGCAGTAGTGGTAGTATTGGCCATAATGATGCTCTTAGTAGCTCAGTTATGGGAGCATCTGCCCTGAAGATTGAGGTGTGCATGGGCAACAAGTGCAAGAAATCAGGAGGTGGCGCATTGCTGGAAGAGTTTGAGAGGGTGATGGGTGTTGAAGGAACTGTTGTTGGGTGCAAGTGTATGGGAAAATGCAAAAATGGTCCTAACATTAGGGTTTCGAACACCGTAGGTGGGATTCAATCTGAAGGAACAGATGATTCGGTTAGGGTTCCAACCAATCCTTTATACATTGGAGTTGGCCTGGAAGATGTGAGCCTCATTGTAGCTAATTTAATTGGGGAAGACAATGAGGATTTGGGGCTTGTTCCTGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

40.81

Weight (kDa)

5.92

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48300
fragaria_vesca	FvH4_4g21650 FvH4_4g21660
malus_domestica	MD13G1156700.v1.1 MD16G1134300.v1.1
prunus_persica	Prupe.1G103600_v2.0.a1 Prupe.1G103600_v2.0.a1
pyrus_communis	pycom13g12050 pycom16g11860
rosa_chinensis	RchiOBHm_Chr4g0427881
rosa_multiflora	Rmu_co8387153.1_g000001 Rmu_sc0000066.1_g000016
rosa_roxburghii	Rroxscaffold_5G00369530
rosa_rugosa	Rorug04G0220200
rosa_samantha	Rh4AG277200 Rh4BG283000 Rh4DG280100
rosa_wichuraiana	Rw4G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	290
AciI	CCGC	3 cut(s)	288, 562, 632
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	3 cut(s)	118, 163, 704
AcuI	CTGAAG	2 cut(s)	851, 1026
AcvI	CACGTG	1 cut(s)	205
AcyI	GRCGYC	2 cut(s)	15, 80
AfaI	GTAC	2 cut(s)	33, 754
AfiI	CCNNNNNNNGG	2 cut(s)	218, 993
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	3 cut(s)	163, 917, 1001
AhlI	ACTAGT	1 cut(s)	749
AjnI	CCWGG	2 cut(s)	455, 1062
AluBI	AGCT	7 cut(s)	253, 358, 467, 651, 807, 1088, 1136
AluI	AGCT	7 cut(s)	253, 358, 467, 651, 807, 1088, 1136
Alw21I	GWGCWC	1 cut(s)	653
AoxI	GGCC	3 cut(s)	453, 784, 1060
ApeKI	GCWGC	3 cut(s)	607, 738, 1133
ApoI	RAATTY	3 cut(s)	118, 163, 704
AspLEI	GCGC	2 cut(s)	50, 881
AspS9I	GGNCC	3 cut(s)	209, 311, 962
AsuHPI	GGTGA	2 cut(s)	662, 916
AsuII	TTCGAA	1 cut(s)	980
AvaII	GGWCC	3 cut(s)	209, 311, 962
BalI	TGGCCA	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	653
BbrPI	CACGTG	1 cut(s)	205
BbsI	GAAGAC	3 cut(s)	63, 285, 1110
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	619, 725
BccI	CCATC	2 cut(s)	295, 901
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	2 cut(s)	457, 1064
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	3 cut(s)	141, 596, 750
BfmI	CTRYAG	1 cut(s)	1131
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	3 cut(s)	608, 739, 1134
BlsI	GCNGC	3 cut(s)	609, 740, 1135
Bme1390I	CCNGG	2 cut(s)	457, 1064
Bme18I	GGWCC	3 cut(s)	209, 311, 962
BmgT120I	GGNCC	3 cut(s)	209, 311, 962
BmiI	GGNNCC	3 cut(s)	210, 211, 1032
BmrFI	CCNGG	2 cut(s)	457, 1064
BmsI	GCATC	3 cut(s)	361, 784, 830
BpiI	GAAGAC	3 cut(s)	63, 285, 1110
Bpu10I	CCTNAGC	1 cut(s)	742
Bpu14I	TTCGAA	1 cut(s)	980
Bsa29I	ATCGAT	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	205
BsaHI	GRCGYC	2 cut(s)	15, 80
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 993
Bse3DI	GCAATG	1 cut(s)	881
BseBI	CCWGG	2 cut(s)	457, 1064
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	218, 993
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	4 cut(s)	311, 557, 756, 822
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	2 cut(s)	619, 725
BsgI	GTGCAG	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	3 cut(s)	455, 786, 1062
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	2 cut(s)	12, 45
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	218, 993
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	3 cut(s)	455, 786, 1062
Bsp119I	TTCGAA	1 cut(s)	980
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp143I	GATC	2 cut(s)	240, 360
BspACI	CCGC	3 cut(s)	288, 562, 632
BspANI	GGCC	3 cut(s)	455, 786, 1062
BspCNI	CTCAG	4 cut(s)	310, 558, 755, 821
BspDI	ATCGAT	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	210, 211, 1032
BspMAI	CTGCAG	1 cut(s)	1135
BspT104I	TTCGAA	1 cut(s)	980
BsrDI	GCAATG	1 cut(s)	881
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	240, 360
BssNI	GRCGYC	2 cut(s)	15, 80
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	457, 1064
Bst4CI	ACNGT	6 cut(s)	315, 494, 602, 688, 925, 988
Bst6I	CTCTTC	2 cut(s)	441, 885
BstACI	GRCGYC	2 cut(s)	15, 80
BstAPI	GCANNNNNTGC	1 cut(s)	858
BstBAI	YACGTR	1 cut(s)	205
BstBI	TTCGAA	1 cut(s)	980
BstDEI	CTNAG	6 cut(s)	297, 566, 742, 800, 808, 1137
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	50, 881
BstKTI	GATC	2 cut(s)	243, 363
BstMBI	GATC	2 cut(s)	240, 360
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 259, 570, 858
BstNI	CCWGG	2 cut(s)	457, 1064
BstNSI	RCATGY	2 cut(s)	191, 698
BstSCI	CCNGG	2 cut(s)	455, 1062
BstSFI	CTRYAG	1 cut(s)	1131
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	619, 725
BstV2I	GAAGAC	3 cut(s)	63, 285, 1110
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	455, 786, 1062
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	499, 699
CfoI	GCGC	2 cut(s)	50, 881
Cfr13I	GGNCC	3 cut(s)	209, 311, 962
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	3 cut(s)	4, 69, 279
Csp6I	GTAC	2 cut(s)	32, 753
CviAII	CATG	6 cut(s)	89, 188, 484, 556, 695, 847
CviQI	GTAC	2 cut(s)	32, 753
DdeI	CTNAG	6 cut(s)	297, 566, 742, 800, 808, 1137
DpnI	GATC	2 cut(s)	242, 362
DpnII	GATC	2 cut(s)	240, 360
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	2 cut(s)	441, 885
EarI	CTCTTC	2 cut(s)	441, 885
Ecl136II	GAGCTC	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	653
Eco47I	GGWCC	3 cut(s)	209, 311, 962
Eco53kI	GAGCTC	1 cut(s)	651
Eco57I	CTGAAG	2 cut(s)	851, 1026
Eco72I	CACGTG	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	651
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	455, 1062
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	6 cut(s)	92, 191, 487, 559, 698, 850
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	6 cut(s)	88, 187, 483, 555, 694, 846
Fnu4HI	GCNGC	3 cut(s)	608, 739, 1134
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	3 cut(s)	608, 739, 1134
FspBI	CTAG	3 cut(s)	141, 596, 750
GlaI	GCGC	2 cut(s)	49, 880
GluI	GCNGC	3 cut(s)	608, 739, 1134
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	455, 786, 1062
HapII	CCGG	2 cut(s)	12, 45
HgaI	GACGC	3 cut(s)	4, 69, 279
HhaI	GCGC	2 cut(s)	50, 881
Hin1I	GRCGYC	2 cut(s)	15, 80
Hin1II	CATG	6 cut(s)	92, 191, 487, 559, 698, 850
Hin6I	GCGC	2 cut(s)	48, 879
HinP1I	GCGC	2 cut(s)	48, 879
HincII	GTYRAC	3 cut(s)	490, 553, 639
HindII	GTYRAC	3 cut(s)	490, 553, 639
HinfI	GANTC	5 cut(s)	497, 521, 721, 997, 1019
HpaII	CCGG	2 cut(s)	12, 45
HphI	GGTGA	2 cut(s)	662, 916
Hpy166II	GTNNAC	3 cut(s)	490, 553, 639
Hpy188I	TCNGA	5 cut(s)	300, 327, 367, 520, 1006
Hpy188III	TCNNGA	7 cut(s)	168, 244, 350, 623, 725, 744, 870
Hpy8I	GTNNAC	3 cut(s)	490, 553, 639
Hpy99I	CGWCG	2 cut(s)	20, 85
HpyAV	CCTTC	8 cut(s)	223, 229, 322, 415, 445, 620, 911, 1001
HpyCH4III	ACNGT	6 cut(s)	315, 494, 602, 688, 925, 988
HpyCH4IV	ACGT	2 cut(s)	145, 204
HpyCH4V	TGCA	8 cut(s)	193, 374, 607, 846, 861, 936, 954, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 259, 570, 858
HpyF3I	CTNAG	6 cut(s)	297, 566, 742, 800, 808, 1137
HpySE526I	ACGT	2 cut(s)	145, 204
Hsp92I	GRCGYC	2 cut(s)	15, 80
Hsp92II	CATG	6 cut(s)	92, 191, 487, 559, 698, 850
HspAI	GCGC	2 cut(s)	48, 879
KflI	GGGWCCC	1 cut(s)	209
Kzo9I	GATC	2 cut(s)	240, 360
LmnI	GCTCC	2 cut(s)	400, 818
Lsp1109I	GCAGC	2 cut(s)	619, 725
LweI	GCATC	3 cut(s)	361, 784, 830
MaeI	CTAG	3 cut(s)	141, 596, 750
MaeII	ACGT	2 cut(s)	145, 204
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	2 cut(s)	242, 362
MboI	GATC	2 cut(s)	240, 360
MfeI	CAATTG	2 cut(s)	158, 395
MhlI	GDGCHC	1 cut(s)	653
MlsI	TGGCCA	1 cut(s)	786
MluNI	TGGCCA	1 cut(s)	786
MmeI	TCCRAC	1 cut(s)	1058
MnlI	CCTC	8 cut(s)	370, 409, 432, 832, 866, 894, 1088, 1105
Mox20I	TGGCCA	1 cut(s)	786
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	6 cut(s)	225, 407, 428, 462, 615, 1094
MslI	CAYNNNNRTG	1 cut(s)	792
Msp20I	TGGCCA	1 cut(s)	786
MspI	CCGG	2 cut(s)	12, 45
MspR9I	CCNGG	2 cut(s)	457, 1064
MunI	CAATTG	2 cut(s)	158, 395
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	2 cut(s)	457, 1064
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	45, 259, 570, 858
NdeII	GATC	2 cut(s)	240, 360
NlaIII	CATG	6 cut(s)	92, 191, 487, 559, 698, 850
NlaIV	GGNNCC	3 cut(s)	210, 211, 1032
NmeAIII	GCCGAG	2 cut(s)	4, 672
NmuCI	GTSAC	1 cut(s)	697
NspI	RCATGY	2 cut(s)	191, 698
NspV	TTCGAA	1 cut(s)	980
PciI	ACATGT	1 cut(s)	694
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	5 cut(s)	497, 521, 721, 997, 1019
PkrI	GCNGC	3 cut(s)	609, 740, 1135
PmaCI	CACGTG	1 cut(s)	205
PmlI	CACGTG	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	209
PscI	ACATGT	1 cut(s)	694
Psp124BI	GAGCTC	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	455, 1062
PspCI	CACGTG	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	455, 1062
PspN4I	GGNNCC	3 cut(s)	210, 211, 1032
PspPI	GGNCC	3 cut(s)	209, 311, 962
PspPPI	RGGWCCY	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	1135
RsaI	GTAC	2 cut(s)	33, 754
RsaNI	GTAC	2 cut(s)	32, 753
RseI	CAYNNNNRTG	1 cut(s)	792
SacI	GAGCTC	1 cut(s)	653
SaqAI	TTAA	6 cut(s)	225, 407, 428, 462, 615, 1094
SatI	GCNGC	3 cut(s)	608, 739, 1134
Sau3AI	GATC	2 cut(s)	240, 360
Sau96I	GGNCC	3 cut(s)	209, 311, 962
ScrFI	CCNGG	2 cut(s)	457, 1064
SduI	GDGCHC	1 cut(s)	653
SfaNI	GCATC	3 cut(s)	361, 784, 830
SfcI	CTRYAG	1 cut(s)	1131
SfuI	TTCGAA	1 cut(s)	980
SinI	GGWCC	3 cut(s)	209, 311, 962
SmiMI	CAYNNNNRTG	1 cut(s)	792
SpeI	ACTAGT	1 cut(s)	749
SsiI	CCGC	3 cut(s)	288, 562, 632
SspMI	CTAG	3 cut(s)	141, 596, 750
SstI	GAGCTC	1 cut(s)	653
StyD4I	CCNGG	2 cut(s)	455, 1062
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	6 cut(s)	315, 494, 602, 688, 925, 988
TaiI	ACGT	2 cut(s)	148, 207
TaqI	TCGA	2 cut(s)	57, 980
TaqII	GACCGA	1 cut(s)	57
TatI	WGTACW	1 cut(s)	752
TfiI	GAWTC	5 cut(s)	497, 521, 721, 997, 1019
Tru1I	TTAA	6 cut(s)	225, 407, 428, 462, 615, 1094
Tru9I	TTAA	6 cut(s)	225, 407, 428, 462, 615, 1094
TscAI	CASTG	2 cut(s)	499, 706
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	3 cut(s)	607, 738, 1133
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	4 cut(s)	77, 491, 498, 572
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	2 cut(s)	499, 706
VpaK11BI	GGWCC	3 cut(s)	209, 311, 962
XapI	RAATTY	3 cut(s)	118, 163, 704
XceI	RCATGY	2 cut(s)	191, 698
XspI	CTAG	3 cut(s)	141, 596, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.