Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013525

Physical Location & Seq

Genomic Coordinates Forward (+)

45749007 .. 45749612

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG283000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAGGACTGTGAATCGTCATCTTCATCGTCTTCATCTGAGTCGAGTGAGAGTGAATGTGGGGAGGTGGTTGACATGAACAGCCTGAGAGGTGAGGTCCCTGCGCAACCGATGCTAGAGGGTTTGCAGCCATCGACCCAAGGAGGGGTGGCATTATTGACCCAACCGAGTTCGGTAACCACACTTCAAGAAGATAAATGCTGCACTGGAGCTAGTACTAGTTGTGGCAGCAGTGATAGTATTGGTCCTAACAATGCGGCTAGTAGCTCAGTTATGGAAGCATCTGTTGTGACGAAGATTGAAGTATGCATGGGCAAAAAGTGCAAGACATCAGGAGGTGTAGCCTTGTTGGAAGAATTCGAGAGGTTGATGGGTGTCGAAGGAAGTGTTGTTGGGTGCAAGTGTATGGGAAAATGCAAAAATGGTCCAAATGTGAGGGTTTTGAATTCTCTGGATGAGATTGAATCCGAAGAAGGAACAGAGGACTCTGTAAGGTATCCCACTAATCCTTTGTACATTGGAGTGGGGCTGGAAGATGTGAGCCTCATCGTGGCCAACTTAATGGGGGAAGTCAAGAAGGATTTGGGGCTTGCCACTTCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

20.76

Weight (kDa)

4.38

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48300
fragaria_vesca	FvH4_4g21650 FvH4_4g21660
malus_domestica	MD13G1156700.v1.1 MD16G1134300.v1.1
prunus_persica	Prupe.1G103600_v2.0.a1 Prupe.1G103600_v2.0.a1
pyrus_communis	pycom13g12050 pycom16g11860
rosa_chinensis	RchiOBHm_Chr4g0427881
rosa_multiflora	Rmu_co8387153.1_g000001 Rmu_sc0000066.1_g000016
rosa_roxburghii	Rroxscaffold_5G00369530
rosa_rugosa	Rorug04G0220200
rosa_samantha	Rh4AG277200 Rh4BG283000 Rh4DG280100
rosa_wichuraiana	Rw4G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	105
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	356, 445
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	217, 515
AfiI	CCNNNNNNNGG	3 cut(s)	144, 145, 550
AgsI	TTSAA	4 cut(s)	188, 302, 445, 464
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	3 cut(s)	212, 267, 602
AluI	AGCT	3 cut(s)	212, 267, 602
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	3 cut(s)	127, 201, 228
ApoI	RAATTY	2 cut(s)	356, 445
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	3 cut(s)	97, 245, 425
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	3 cut(s)	97, 245, 425
BalI	TGGCCA	1 cut(s)	554
BarI	GAAGNNNNNNTAC	2 cut(s)	168, 200
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	139, 188, 240
BccI	CCATC	2 cut(s)	139, 364
BciVI	GTATCC	1 cut(s)	507
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	4 cut(s)	116, 213, 219, 261
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	4 cut(s)	128, 202, 229, 258
BlsI	GCNGC	4 cut(s)	129, 203, 230, 259
BmcAI	AGTACT	1 cut(s)	217
Bme18I	GGWCC	3 cut(s)	97, 245, 425
BmgT120I	GGNCC	3 cut(s)	97, 245, 425
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	2 cut(s)	102, 290
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 145, 550
Bse1I	ACTGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	3 cut(s)	144, 145, 550
BseMII	CTCAG	3 cut(s)	30, 77, 282
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	139, 188, 240
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	144, 145, 550
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	554
Bsp1407I	TGTACA	1 cut(s)	513
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	3 cut(s)	31, 78, 281
BspLI	GGNNCC	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	11
BstAPI	GCANNNNNTGC	2 cut(s)	112, 321
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	4 cut(s)	39, 86, 268, 603
BstEII	GGTNACC	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 321, 599
BstPI	GGTNACC	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	139, 188, 240
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	204, 238
Cac8I	GCNNGC	1 cut(s)	591
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	97, 245, 425
Csp6I	GTAC	2 cut(s)	216, 514
CviAII	CATG	2 cut(s)	76, 310
CviQI	GTAC	2 cut(s)	216, 514
DdeI	CTNAG	4 cut(s)	39, 86, 268, 603
EaeI	YGGCCR	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	139
Eco47I	GGWCC	3 cut(s)	97, 245, 425
Eco57I	CTGAAG	1 cut(s)	582
Eco91I	GGTNACC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	175
EcoRI	GAATTC	2 cut(s)	356, 445
EcoT14I	CCWWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	79, 313
FaiI	YATR	5 cut(s)	77, 275, 307, 311, 407
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	75, 309
Fnu4HI	GCNGC	4 cut(s)	128, 202, 229, 258
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	128, 202, 229, 258
FspBI	CTAG	4 cut(s)	116, 213, 219, 261
FspI	TGCGCA	1 cut(s)	105
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	4 cut(s)	128, 202, 229, 258
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	554
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	79, 313
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	14, 41, 464, 485
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	40, 469
Hpy188III	TCNNGA	5 cut(s)	188, 333, 361, 452, 574
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	374, 467, 571
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	6 cut(s)	127, 204, 309, 324, 399, 417
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 321, 599
HpyF3I	CTNAG	4 cut(s)	39, 86, 268, 603
Hsp92II	CATG	2 cut(s)	79, 313
HspAI	GCGC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	6 cut(s)	98, 114, 192, 318, 437, 515
Lsp1109I	GCAGC	3 cut(s)	139, 188, 240
LweI	GCATC	2 cut(s)	102, 290
MaeI	CTAG	4 cut(s)	116, 213, 219, 261
MaeIII	GTNAC	2 cut(s)	175, 289
MboII	GAAGA	7 cut(s)	15, 24, 203, 307, 365, 482, 545
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	2 cut(s)	356, 445
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	2 cut(s)	50, 479
MmeI	TCCRAC	1 cut(s)	330
Mox20I	TGGCCA	1 cut(s)	554
Mph1103I	ATGCAT	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	1 cut(s)	560
MslI	CAYNNNNRTG	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	554
MwoI	GCNNNNNNNGC	3 cut(s)	112, 321, 599
NlaIII	CATG	2 cut(s)	79, 313
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	289
NsbI	TGCGCA	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	14, 464
PkrI	GCNGC	4 cut(s)	129, 203, 230, 259
PleI	GAGTC	2 cut(s)	49, 479
PpsI	GAGTC	2 cut(s)	49, 479
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	3 cut(s)	97, 245, 425
PspPPI	RGGWCCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	217, 515
RsaNI	GTAC	2 cut(s)	216, 514
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	4 cut(s)	128, 202, 229, 258
Sau96I	GGNCC	3 cut(s)	97, 245, 425
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	2 cut(s)	50, 479
SetI	ASST	9 cut(s)	69, 94, 99, 214, 269, 340, 368, 497, 604
SfaNI	GCATC	2 cut(s)	102, 290
SinI	GGWCC	3 cut(s)	97, 245, 425
SmiMI	CAYNNNNRTG	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	2 cut(s)	356, 445
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	4 cut(s)	116, 213, 219, 261
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	4 cut(s)	44, 134, 360, 378
TasI	AATT	2 cut(s)	356, 445
TatI	WGTACW	2 cut(s)	215, 513
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	14, 464
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	2 cut(s)	211, 238
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	127, 201, 228
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	15, 17, 24, 92
TspRI	CASTG	2 cut(s)	211, 238
VpaK11BI	GGWCC	3 cut(s)	97, 245, 425
XapI	RAATTY	2 cut(s)	356, 445
XspI	CTAG	4 cut(s)	116, 213, 219, 261
ZrmI	AGTACT	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.