RchiOBHm_Chr4g0427881

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013525
Physical Location & Seq
Forward (+)
53024602 .. 53026407
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39679

Sequence Viewer

Length: 1077 bp
ATGGAGGTTTCTGGATTAGTTTCCCGCCAAGTTCCGTGCTTTTCCGGCGCCGGAATCGATACCCGGTCTGCAAATTCATCGTTTTCCGGCGACGTCCACTTTCCGGGTCGTAATGAATTTGGAGTGAGTCTGAGGACCCGAAGGGCTATGAGTTCTGGGTTTTGCGATAAGGGGCATGTGGAGTATTATTATTCGGGTCCCAGATGCGGTGGTAATAAGAAGGAGAAGGAGATCAAGAAGAAATTGAAGTTGCTTAAAGGATTGTCGGAGCTGTCTGCGTCTTCTCAGATTAGTACTGGGTTGGATTCCGAGGAGGGTTTGGCTGCTCAAGTTCAGGGGAAGCTGATTTCGGAAGGTGCAGAAGCATTGCTACAGAAATTGGAACAGGTAAGAGCTGCGGAGAAGGAGTTGAAGAAAAAGAAGAAAGAAGAGAAGGCGAGGCTTAAAGCAGAGCGGATGAATACCATGAAGGACTGTGAATCGTCATCTTCATCTTCATCGTCTTCATCTGAGTCGAGTGAGAGTGAATGTGGGGAGGTGGTTGACATGAACAGCCTGAGAGGTGAGGTCCCTGCGCAACTGATACTAGAGGGTTTGCAGCCATCGACCCAAGGAGGGGTGGCATTATTGACCCAGCCGAGTTCGGTAACCACACTTCAAGAAGATGAATCCTGCACTGGAACTAGTACTAGTTGTGGCAGCAGTGATAGTATTGGTCCTAACAATGCGGCTAGTAGCTCAGTTATGGAAGCATCTGTTGTGACGAAGATTGAAGTATGCATGGGCAAAAAGTGCAAGACATCAGGAGGTGTAGCCTTGTTGGAAGAATTCGAGAGGTTGATGGGTGTCGAAGGAAGTGTTGTTGGGTGCAAGTGTATGGGAAAATGCAAAAATGGTCCAAATGTCAGGGTTTTGAATTCTCTGGATGAGATTGAATCCGAAGAAGGAACAGAGGACTCTGTAAGGAATCCCACTAATCCTTTGTACATTGGAGTGGGCCTGGAAGATGTGAGCCTCATCGTGGCCAACTTAATGGGGGGAGTCAAGAAGGATTTGGGGCTTGCCCCTGCAACTTAG

Protein Analysis

358

Amino Acids

37.76

Weight (kDa)

5.38

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48300
fragaria_vesca FvH4_4g21650 FvH4_4g21660
malus_domestica MD13G1156700.v1.1 MD16G1134300.v1.1
prunus_persica Prupe.1G103600_v2.0.a1 Prupe.1G103600_v2.0.a1
pyrus_communis pycom13g12050 pycom16g11860
rosa_chinensis RchiOBHm_Chr4g0427881
rosa_multiflora Rmu_co8387153.1_g000001 Rmu_sc0000066.1_g000016
rosa_roxburghii Rroxscaffold_5G00369530
rosa_rugosa Rorug04G0220200
rosa_samantha Rh4AG277200 Rh4BG283000 Rh4DG280100
rosa_wichuraiana Rw4G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
Acc16I TGCGCA 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 47
AccBSI CCGCTC 1 cut(s) 454
AciI CCGC 5 cut(s) 25, 207, 398, 454, 728
AcoI YGGCCR 1 cut(s) 1023
AcsI RAATTY 4 cut(s) 73, 116, 827, 916
AcyI GRCGYC 2 cut(s) 48, 93
AfaI GTAC 3 cut(s) 295, 688, 986
AfiI CCNNNNNNNGG 5 cut(s) 103, 206, 615, 616, 1021
AgsI TTSAA 6 cut(s) 247, 412, 659, 773, 916, 935
AhlI ACTAGT 2 cut(s) 683, 689
AjnI CCWGG 1 cut(s) 999
AluBI AGCT 4 cut(s) 271, 343, 395, 738
AluI AGCT 4 cut(s) 271, 343, 395, 738
AoxI GGCC 2 cut(s) 997, 1023
ApeKI GCWGC 4 cut(s) 323, 395, 598, 699
ApoI RAATTY 4 cut(s) 73, 116, 827, 916
AspLEI GCGC 2 cut(s) 50, 577
AspS9I GGNCC 6 cut(s) 135, 197, 568, 716, 896, 997
AsuC2I CCSGG 2 cut(s) 64, 105
AsuHPI GGTGA 1 cut(s) 575
AvaII GGWCC 5 cut(s) 135, 197, 568, 716, 896
BalI TGGCCA 1 cut(s) 1025
BanI GGYRCC 1 cut(s) 47
BarI GAAGNNNNNNTAC 4 cut(s) 354, 386, 639, 671
BbsI GAAGAC 2 cut(s) 273, 495
BbvI GCAGC 4 cut(s) 310, 382, 610, 711
BccI CCATC 2 cut(s) 610, 835
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 1001
BcnI CCSGG 2 cut(s) 64, 105
BcuI ACTAGT 2 cut(s) 683, 689
BfaI CTAG 4 cut(s) 587, 684, 690, 732
BfmI CTRYAG 1 cut(s) 371
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 5 cut(s) 324, 396, 599, 700, 729
BlsI GCNGC 5 cut(s) 325, 397, 600, 701, 730
BmcAI AGTACT 2 cut(s) 295, 688
Bme1390I CCNGG 3 cut(s) 64, 105, 1001
Bme18I GGWCC 5 cut(s) 135, 197, 568, 716, 896
BmgT120I GGNCC 6 cut(s) 135, 197, 568, 716, 896, 997
BmiI GGNNCC 5 cut(s) 49, 137, 198, 199, 570
BmrFI CCNGG 3 cut(s) 64, 105, 1001
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 194, 761
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 273, 495
BpuEI CTTGAG 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 64, 105
Bsa29I ATCGAT 1 cut(s) 57
BsaHI GRCGYC 2 cut(s) 48, 93
BsaJI CCNNGG 2 cut(s) 309, 610
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 206, 615, 616, 1021
Bse1I ACTGG 2 cut(s) 301, 682
Bse3DI GCAATG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 1001
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 309, 610
BseGI GGATG 2 cut(s) 462, 931
BseLI CCNNNNNNNGG 5 cut(s) 103, 206, 615, 616, 1021
BseMI GCAATG 1 cut(s) 365
BseMII CTCAG 5 cut(s) 122, 299, 501, 548, 753
BseNI ACTGG 2 cut(s) 301, 682
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 4 cut(s) 310, 382, 610, 711
BseYI CCCAGC 1 cut(s) 633
BsgI GTGCAG 2 cut(s) 378, 658
BshFI GGCC 2 cut(s) 999, 1025
BshNI GGYRCC 1 cut(s) 47
BshVI ATCGAT 1 cut(s) 57
BsiSI CCGG 5 cut(s) 45, 51, 64, 87, 104
BslFI GGGAC 2 cut(s) 183, 554
BslI CCNNNNNNNGG 5 cut(s) 103, 206, 615, 616, 1021
BsmFI GGGAC 2 cut(s) 183, 554
BsnI GGCC 2 cut(s) 999, 1025
Bsp1407I TGTACA 1 cut(s) 984
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 5 cut(s) 25, 207, 398, 454, 728
BspANI GGCC 2 cut(s) 999, 1025
BspCNI CTCAG 5 cut(s) 123, 298, 502, 549, 752
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 5 cut(s) 49, 137, 198, 199, 570
BspT107I GGYRCC 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 365
BsrGI TGTACA 1 cut(s) 984
BsrI ACTGG 2 cut(s) 301, 682
BssECI CCNNGG 2 cut(s) 309, 610
BssMI GATC 1 cut(s) 231
BssNI GRCGYC 2 cut(s) 48, 93
BssT1I CCWWGG 1 cut(s) 610
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 1 cut(s) 476
Bst6I CTCTTC 1 cut(s) 423
BstACI GRCGYC 2 cut(s) 48, 93
BstAPI GCANNNNNTGC 1 cut(s) 792
BstAUI TGTACA 1 cut(s) 984
BstC8I GCNNGC 1 cut(s) 1062
BstDEI CTNAG 6 cut(s) 131, 285, 510, 557, 739, 1074
BstEII GGTNACC 1 cut(s) 646
BstF5I GGATG 2 cut(s) 462, 931
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 2 cut(s) 50, 577
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 45, 792
BstNI CCWGG 1 cut(s) 1001
BstNSI RCATGY 1 cut(s) 179
BstPI GGTNACC 1 cut(s) 646
BstSCI CCNGG 3 cut(s) 62, 103, 999
BstSFI CTRYAG 1 cut(s) 371
BstV1I GCAGC 4 cut(s) 310, 382, 610, 711
BstV2I GAAGAC 2 cut(s) 273, 495
BstXI CCANNNNNNTGG 1 cut(s) 1033
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 2 cut(s) 999, 1025
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 2 cut(s) 462, 931
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 675, 709
Cac8I GCNNGC 1 cut(s) 1062
CfoI GCGC 2 cut(s) 50, 577
Cfr13I GGNCC 6 cut(s) 135, 197, 568, 716, 896, 997
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 267
Csp6I GTAC 3 cut(s) 294, 687, 985
CviAII CATG 4 cut(s) 176, 466, 547, 781
CviQI GTAC 3 cut(s) 294, 687, 985
DdeI CTNAG 6 cut(s) 131, 285, 510, 557, 739, 1074
DinI GGCGCC 1 cut(s) 49
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
EaeI YGGCCR 1 cut(s) 1023
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 610
Eco47I GGWCC 5 cut(s) 135, 197, 568, 716, 896
Eco91I GGTNACC 1 cut(s) 646
EcoO109I RGGNCCY 3 cut(s) 135, 197, 568
EcoO65I GGTNACC 1 cut(s) 646
EcoRI GAATTC 2 cut(s) 827, 916
EcoRII CCWGG 1 cut(s) 999
EcoT14I CCWWGG 1 cut(s) 610
EcoT22I ATGCAT 1 cut(s) 782
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 610
FaeI CATG 4 cut(s) 179, 469, 550, 784
FaiI YATR 8 cut(s) 149, 177, 467, 548, 746, 778, 782, 878
FaqI GGGAC 2 cut(s) 183, 554
FatI CATG 4 cut(s) 175, 465, 546, 780
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 5 cut(s) 324, 396, 599, 700, 729
FokI GGATG 2 cut(s) 469, 938
Fsp4HI GCNGC 5 cut(s) 324, 396, 599, 700, 729
FspBI CTAG 4 cut(s) 587, 684, 690, 732
FspI TGCGCA 1 cut(s) 576
GlaI GCGC 2 cut(s) 49, 576
GluI GCNGC 5 cut(s) 324, 396, 599, 700, 729
GsaI CCCAGC 1 cut(s) 637
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 2 cut(s) 999, 1025
HapII CCGG 5 cut(s) 45, 51, 64, 87, 104
HgaI GACGC 1 cut(s) 267
HhaI GCGC 2 cut(s) 50, 577
Hin1I GRCGYC 2 cut(s) 48, 93
Hin1II CATG 4 cut(s) 179, 469, 550, 784
Hin6I GCGC 2 cut(s) 48, 575
HinP1I GCGC 2 cut(s) 48, 575
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HpaII CCGG 5 cut(s) 45, 51, 64, 87, 104
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 2 cut(s) 97, 544
Hpy188I TCNGA 7 cut(s) 132, 268, 288, 310, 352, 511, 940
Hpy188III TCNNGA 7 cut(s) 12, 235, 659, 804, 832, 923, 1045
Hpy8I GTNNAC 2 cut(s) 97, 544
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 9 cut(s) 71, 359, 598, 675, 780, 795, 870, 888, 1070
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 792
HpyF3I CTNAG 6 cut(s) 131, 285, 510, 557, 739, 1074
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 2 cut(s) 48, 93
Hsp92II CATG 4 cut(s) 179, 469, 550, 784
HspAI GCGC 2 cut(s) 48, 575
KasI GGCGCC 1 cut(s) 47
KflI GGGWCCC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 4 cut(s) 310, 382, 610, 711
LweI GCATC 2 cut(s) 194, 761
MaeI CTAG 4 cut(s) 587, 684, 690, 732
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 646, 760
MalI GATC 1 cut(s) 233
MbiI CCGCTC 1 cut(s) 454
MboI GATC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 1025
MluCI AATT 6 cut(s) 73, 116, 242, 377, 827, 916
MluNI TGGCCA 1 cut(s) 1025
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 4 cut(s) 136, 521, 950, 1050
MmeI TCCRAC 3 cut(s) 246, 282, 801
Mox20I TGGCCA 1 cut(s) 1025
Mph1103I ATGCAT 1 cut(s) 782
MscI TGGCCA 1 cut(s) 1025
MseI TTAA 3 cut(s) 255, 444, 1031
MslI CAYNNNNRTG 1 cut(s) 992
Msp20I TGGCCA 1 cut(s) 1025
MspI CCGG 5 cut(s) 45, 51, 64, 87, 104
MspR9I CCNGG 3 cut(s) 64, 105, 1001
MvaI CCWGG 1 cut(s) 1001
MwoI GCNNNNNNNGC 2 cut(s) 45, 792
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 2 cut(s) 64, 105
NdeII GATC 1 cut(s) 231
NlaIII CATG 4 cut(s) 179, 469, 550, 784
NlaIV GGNNCC 5 cut(s) 49, 137, 198, 199, 570
NmeAIII GCCGAG 1 cut(s) 663
NmuCI GTSAC 1 cut(s) 760
NsbI TGCGCA 1 cut(s) 576
NsiI ATGCAT 1 cut(s) 782
NspI RCATGY 1 cut(s) 179
PfeI GAWTC 6 cut(s) 54, 305, 479, 668, 935, 967
PkrI GCNGC 5 cut(s) 325, 397, 600, 701, 730
PleI GAGTC 4 cut(s) 135, 520, 950, 1049
PluTI GGCGCC 1 cut(s) 51
PpsI GAGTC 4 cut(s) 135, 520, 950, 1049
PpuMI RGGWCCY 3 cut(s) 135, 197, 568
Psp5II RGGWCCY 3 cut(s) 135, 197, 568
Psp6I CCWGG 1 cut(s) 999
PspEI GGTNACC 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 633
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 5 cut(s) 49, 137, 198, 199, 570
PspPI GGNCC 6 cut(s) 135, 197, 568, 716, 896, 997
PspPPI RGGWCCY 3 cut(s) 135, 197, 568
RsaI GTAC 3 cut(s) 295, 688, 986
RsaNI GTAC 3 cut(s) 294, 687, 985
RseI CAYNNNNRTG 1 cut(s) 992
SaqAI TTAA 3 cut(s) 255, 444, 1031
SatI GCNGC 5 cut(s) 324, 396, 599, 700, 729
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 6 cut(s) 135, 197, 568, 716, 896, 997
ScaI AGTACT 2 cut(s) 295, 688
SchI GAGTC 4 cut(s) 136, 521, 950, 1050
ScrFI CCNGG 3 cut(s) 64, 105, 1001
SfaNI GCATC 2 cut(s) 194, 761
SfcI CTRYAG 1 cut(s) 371
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 5 cut(s) 135, 197, 568, 716, 896
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
SpeI ACTAGT 2 cut(s) 683, 689
Sse9I AATT 6 cut(s) 73, 116, 242, 377, 827, 916
SsiI CCGC 5 cut(s) 25, 207, 398, 454, 728
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 4 cut(s) 587, 684, 690, 732
StyD4I CCNGG 3 cut(s) 62, 103, 999
StyI CCWWGG 1 cut(s) 610
TaaI ACNGT 1 cut(s) 476
TaiI ACGT 1 cut(s) 96
TaqI TCGA 5 cut(s) 57, 515, 605, 831, 849
TasI AATT 6 cut(s) 73, 116, 242, 377, 827, 916
TatI WGTACW 3 cut(s) 293, 686, 984
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 6 cut(s) 54, 305, 479, 668, 935, 967
Tru1I TTAA 3 cut(s) 255, 444, 1031
Tru9I TTAA 3 cut(s) 255, 444, 1031
TscAI CASTG 2 cut(s) 682, 709
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 4 cut(s) 323, 395, 598, 699
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 9 cut(s) 66, 129, 473, 480, 482, 486, 495, 563, 681
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 682, 709
VpaK11BI GGWCC 5 cut(s) 135, 197, 568, 716, 896
XapI RAATTY 4 cut(s) 73, 116, 827, 916
XceI RCATGY 1 cut(s) 179
XspI CTAG 4 cut(s) 587, 684, 690, 732
ZraI GACGTC 1 cut(s) 94
ZrmI AGTACT 2 cut(s) 295, 688
Zsp2I ATGCAT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.