Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Reverse (-)

17854813 .. 17855715

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATTCTGCATCGTCCAACACCAAAGCTATAGACCCTCCACTTCACATGTTGGGTTTCGAGTTCGATGAATTATCTCCGACACGTATCACAGGTCGCCTTCCTGTTTCTCCCGTCTGCTGCCAGCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTAGCAAGTATGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGCTGGAATTCAACTCTCAATCAACCATTTGAAGAGTGCTGATCTTGGAGACCTTGTCTTCGCCGAAGCAACTCCTGTAAGCACAGGGAAGACTATTCAGGTTTGGGAAGTCAAGTTATGGAAAACAACACAGAAAGATAAAGCTAACAAAATCTTAATATCTTCCTCTAGAGTTACACTTATCTGTAATCTACCTATCCCTGATAACGCCAAAGATGCAGCAAACATGCTCAAAATGGTCGCAAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

156

Amino Acids

16.71

Weight (kDa)

9.07

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	45 - 118	5.4e-17	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	225
AflIII	ACRYGT	2 cut(s)	48, 83
AgsI	TTSAA	4 cut(s)	133, 211, 230, 250
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	29, 191, 362
AluI	AGCT	3 cut(s)	29, 191, 362
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	120, 437
ApoI	RAATTY	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
BanII	GRGCYC	1 cut(s)	193
BbsI	GAAGAC	2 cut(s)	268, 314
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	107, 449
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	2 cut(s)	121, 438
BlsI	GCNGC	2 cut(s)	122, 439
BmsI	GCATC	2 cut(s)	20, 424
BpiI	GAAGAC	2 cut(s)	268, 314
BsaAI	YACGTR	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
BseXI	GCAGC	2 cut(s)	107, 449
BsiHKAI	GWGCWC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	261
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 197, 434
BstNSI	RCATGY	2 cut(s)	52, 448
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	107, 449
BstV2I	GAAGAC	2 cut(s)	268, 314
Cac8I	GCNNGC	1 cut(s)	125
CviAII	CATG	3 cut(s)	49, 196, 445
CviJI	RGCY	6 cut(s)	29, 127, 167, 191, 200, 362
CviKI_1	RGCY	6 cut(s)	29, 127, 167, 191, 200, 362
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	3 cut(s)	52, 199, 448
FaiI	YATR	6 cut(s)	32, 50, 185, 197, 337, 446
FatI	CATG	3 cut(s)	48, 195, 444
Fnu4HI	GCNGC	2 cut(s)	121, 438
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	2 cut(s)	121, 438
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	121, 438
Hin1II	CATG	3 cut(s)	52, 199, 448
HinfI	GANTC	2 cut(s)	5, 170
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	11, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 197, 434
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	3 cut(s)	52, 199, 448
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	9 cut(s)	78, 117, 137, 189, 207, 288, 302, 306, 432
Lsp1109I	GCAGC	2 cut(s)	107, 449
LweI	GCATC	2 cut(s)	20, 424
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	138, 391
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	4 cut(s)	262, 268, 319, 372
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	2 cut(s)	71, 225
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	42, 104
MnlI	CCTC	2 cut(s)	48, 394
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	164, 197, 434
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	52, 199, 448
NmeAIII	GCCGAG	1 cut(s)	193
NspI	RCATGY	2 cut(s)	52, 448
OliI	CACNNNNGTG	1 cut(s)	147
PciI	ACATGT	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	5
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	122, 439
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	86
PscI	ACATGT	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	2 cut(s)	121, 438
Sau3AI	GATC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	9 cut(s)	31, 88, 97, 138, 193, 273, 321, 364, 415
SfaNI	GCATC	2 cut(s)	20, 424
SfcI	CTRYAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	71, 225
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	60, 66
TasI	AATT	2 cut(s)	71, 225
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseI	GCWGC	2 cut(s)	120, 437
TspDTI	ATGAA	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	386
XceI	RCATGY	2 cut(s)	52, 448
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.