Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Forward (+)

8292689 .. 8293636

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTTCTCGGCCCCAATCTCAGCCACCGGCGCCGGCGCTATTGCCGCCCTCGACGACGTCGGTTCTGGATGCTCCACTAGGGGAAATCGGGTTCGAGGTTGAAGAGATAACCCCCAAAAAGGTCTCTGGTCGCCTCCATGTCACCGAAAAGTGCGTCCAGCCGTTCAAGGTGCTACATGGGGGGATATCAGCACTCATCTCTGAGGCCCTGGCTAGCATGGGAGCTCACATGGCCTCTGGTTTCCAAAGGGTGGCCGGGATTCACCTCAGCATCAGCCATTTGAAGCCCGCCCAGCTCGGCGACCATATCTTTGCTGAAGCCTCCCCGGTCTACGTCGGCAGAACCATTCAGGTTTGGGAGGTGAGACTATGGAAGATTGACCCTTCAAACTCAGACATCAAATCCATCGTATCATCATCAAGAGTTACTCTTTTAAGCAACATGCCTGTGCCAGAGCACGCGAAAGACGCTGGTGAAAAGCTCAGGAAGTATGCCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

169

Amino Acids

18.09

Weight (kDa)

9.1

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	505
AatII	GACGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	464
AciI	CCGC	2 cut(s)	47, 291
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	2 cut(s)	32, 59
AfiI	CCNNNNNNNGG	2 cut(s)	121, 253
AgsI	TTSAA	4 cut(s)	104, 169, 286, 390
AjnI	CCWGG	1 cut(s)	210
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	3 cut(s)	227, 298, 484
AluI	AGCT	3 cut(s)	227, 298, 484
Alw21I	GWGCWC	2 cut(s)	229, 462
Alw26I	GTCTC	2 cut(s)	130, 361
AoxI	GGCC	4 cut(s)	11, 207, 234, 255
ArsI	GACNNNNNNTTYG	4 cut(s)	141, 173, 296, 328
AspLEI	GCGC	2 cut(s)	34, 40
AspS9I	GGNCC	2 cut(s)	12, 208
AsuC2I	CCSGG	2 cut(s)	259, 329
AsuHPI	GGTGA	4 cut(s)	136, 257, 376, 488
AsuNHI	GCTAGC	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	229, 462
BbvCI	CCTCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	2 cut(s)	259, 329
BcoDI	GTCTC	2 cut(s)	130, 361
BfaI	CTAG	2 cut(s)	80, 216
BfoI	RGCGCY	2 cut(s)	35, 41
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	3 cut(s)	212, 259, 329
BmgT120I	GGNCC	2 cut(s)	12, 208
BmiI	GGNNCC	2 cut(s)	14, 33
BmrFI	CCNGG	3 cut(s)	212, 259, 329
BmsI	GCATC	2 cut(s)	61, 282
BmtI	GCTAGC	1 cut(s)	219
Bpu10I	CCTNAGC	2 cut(s)	269, 485
BpuMI	CCSGG	2 cut(s)	259, 329
BsaHI	GRCGYC	2 cut(s)	32, 59
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	210, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 253
Bse118I	RCCGGY	2 cut(s)	28, 34
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	210, 327
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	121, 253
BseMII	CTCAG	5 cut(s)	35, 195, 283, 408, 499
BseYI	CCCAGC	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	4 cut(s)	13, 209, 236, 257
BshNI	GGYRCC	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	229, 462
BsiSI	CCGG	4 cut(s)	29, 35, 258, 329
BslI	CCNNNNNNNGG	2 cut(s)	121, 253
BsmAI	GTCTC	2 cut(s)	130, 361
BsnI	GGCC	4 cut(s)	13, 209, 236, 257
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	229, 462
BspACI	CCGC	2 cut(s)	47, 291
BspANI	GGCC	4 cut(s)	13, 209, 236, 257
BspCNI	CTCAG	5 cut(s)	34, 196, 282, 407, 498
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	2 cut(s)	14, 33
BspOI	GCTAGC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	130
BsrFI	RCCGGY	2 cut(s)	28, 34
BssAI	RCCGGY	2 cut(s)	28, 34
BssECI	CCNNGG	2 cut(s)	210, 327
BssNI	GRCGYC	2 cut(s)	32, 59
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	32, 59
BstC8I	GCNNGC	4 cut(s)	36, 217, 291, 462
BstDEI	CTNAG	5 cut(s)	21, 204, 269, 394, 485
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	464
BstH2I	RGCGCY	2 cut(s)	35, 41
BstHHI	GCGC	2 cut(s)	34, 40
BstMAI	GTCTC	2 cut(s)	130, 361
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 46, 233, 295, 470
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	3 cut(s)	210, 257, 327
BstUI	CGCG	1 cut(s)	464
BsuRI	GGCC	4 cut(s)	13, 209, 236, 257
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	4 cut(s)	36, 217, 291, 462
CfoI	GCGC	2 cut(s)	34, 40
Cfr10I	RCCGGY	2 cut(s)	28, 34
Cfr13I	GGNCC	2 cut(s)	12, 208
CseI	GACGC	2 cut(s)	145, 479
CviAII	CATG	5 cut(s)	140, 179, 220, 232, 445
DdeI	CTNAG	5 cut(s)	21, 204, 269, 394, 485
DinI	GGCGCC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
FaeI	CATG	5 cut(s)	143, 182, 223, 235, 448
FaiI	YATR	9 cut(s)	141, 180, 221, 233, 309, 373, 446, 495, 505
FatI	CATG	5 cut(s)	139, 178, 219, 231, 444
FauI	CCCGC	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	2 cut(s)	80, 216
GlaI	GCGC	2 cut(s)	33, 39
GluI	GCNGC	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	298
HaeII	RGCGCY	2 cut(s)	35, 41
HaeIII	GGCC	4 cut(s)	13, 209, 236, 257
HapII	CCGG	4 cut(s)	29, 35, 258, 329
HgaI	GACGC	2 cut(s)	145, 479
HhaI	GCGC	2 cut(s)	34, 40
Hin1I	GRCGYC	2 cut(s)	32, 59
Hin1II	CATG	5 cut(s)	143, 182, 223, 235, 448
Hin6I	GCGC	2 cut(s)	32, 38
HinP1I	GCGC	2 cut(s)	32, 38
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	4 cut(s)	29, 35, 258, 329
HphI	GGTGA	4 cut(s)	136, 257, 376, 488
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	205, 397
Hpy188III	TCNNGA	3 cut(s)	68, 423, 487
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	4 cut(s)	58, 61, 64, 341
HpyAV	CCTTC	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	59, 336
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 46, 233, 295, 470
HpyF3I	CTNAG	5 cut(s)	21, 204, 269, 394, 485
HpySE526I	ACGT	2 cut(s)	59, 336
Hsp92I	GRCGYC	2 cut(s)	32, 59
Hsp92II	CATG	5 cut(s)	143, 182, 223, 235, 448
HspAI	GCGC	2 cut(s)	32, 38
KasI	GGCGCC	1 cut(s)	31
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	79, 224
LweI	GCATC	2 cut(s)	61, 282
MaeI	CTAG	2 cut(s)	80, 216
MaeII	ACGT	2 cut(s)	59, 336
MaeIII	GTNAC	2 cut(s)	142, 427
MboII	GAAGA	2 cut(s)	116, 388
MhlI	GDGCHC	2 cut(s)	229, 462
MluCI	AATT	1 cut(s)	500
Mly113I	GGCGCC	1 cut(s)	32
MnlI	CCTC	8 cut(s)	61, 91, 146, 199, 247, 278, 334, 355
MreI	CGCCGGCG	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	34
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	4 cut(s)	29, 35, 258, 329
MspR9I	CCNGG	3 cut(s)	212, 259, 329
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	5 cut(s)	31, 46, 233, 295, 470
NaeI	GCCGGC	1 cut(s)	36
NarI	GGCGCC	1 cut(s)	32
NciI	CCSGG	2 cut(s)	259, 329
NgoMIV	GCCGGC	1 cut(s)	34
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	5 cut(s)	143, 182, 223, 235, 448
NlaIV	GGNNCC	2 cut(s)	14, 33
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	48
PluTI	GGCGCC	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	14, 33
PspPI	GGNCC	2 cut(s)	12, 208
PsyI	GACNNNGTC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	1 cut(s)	47
Sau96I	GGNCC	2 cut(s)	12, 208
ScrFI	CCNGG	3 cut(s)	212, 259, 329
SduI	GDGCHC	2 cut(s)	229, 462
SfaNI	GCATC	2 cut(s)	61, 282
SfoI	GGCGCC	1 cut(s)	33
SgrAI	CRCCGGYG	2 cut(s)	28, 34
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	1 cut(s)	500
SsiI	CCGC	2 cut(s)	47, 291
SspDI	GGCGCC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	80, 216
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	3 cut(s)	210, 257, 327
TaiI	ACGT	2 cut(s)	62, 339
TaqI	TCGA	2 cut(s)	53, 96
TasI	AATT	1 cut(s)	500
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	253
XceI	RCATGY	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	80, 216
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.