Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Reverse (-)

4950848 .. 4952532

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G045200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTTCCCGGTCCCAATCCAAGCCATCATCAGCACCACCACCACCATCACCGCGGTCAAAGACGGAGGCTTTAGATGTTTCCCTTCATGAAATTGGGTTCGAGATTGAAGAGGTAACCCCAAACAAGGTCTCCGGTCACCTACATGTCACCCAAAGGTGCTGTCAGCCTTTCAAGGTGTTGCATGGAGGGGTATCAGCTCTCATAGCTGAGTCTCTGGCTAGCATAGGAGCCCACCTGGCCTCTGGTTTTCAAAGGGTGGCTGGGATTCACCTCAGCATCAACCATTTGAAGCGTGCTGAGCTTGGTGACCATATCTTTGCTGAAGCCACGCCTGTCAATCTTGGCAAAACCATTCAGGTTTGGGAGGTGAGACTGTGGAAGATTAATCCTTCAAACTCAGACATCAAATCCTTAGTATCATCATCAAGAGTTACTCTTCTATGCAACATGCCTGTGCCAGAGCATGCAAAAGATGCCGGGGATGCTATAAAGAAGTATGCCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

171

Amino Acids

18.34

Weight (kDa)

9.07

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	511
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	53, 55
AcuI	CTGAAG	1 cut(s)	345
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	5 cut(s)	110, 175, 254, 292, 396
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	200, 209, 304
AluI	AGCT	3 cut(s)	200, 209, 304
Alw26I	GTCTC	3 cut(s)	136, 219, 367
AoxI	GGCC	1 cut(s)	240
ArsI	GACNNNNNNTTYG	4 cut(s)	148, 180, 302, 334
AseI	ATTAAT	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	2 cut(s)	10, 481
AsuHPI	GGTGA	6 cut(s)	42, 131, 142, 263, 320, 382
AsuNHI	GCTAGC	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	275
BccI	CCATC	2 cut(s)	34, 55
BciT130I	CCWGG	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	10, 481
BcoDI	GTCTC	3 cut(s)	136, 219, 367
BfaI	CTAG	1 cut(s)	222
BglI	GCCNNNNNGGC	1 cut(s)	239
BlpI	GCTNAGC	1 cut(s)	300
Bme1390I	CCNGG	3 cut(s)	10, 239, 481
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	2 cut(s)	14, 232
BmrFI	CCNGG	3 cut(s)	10, 239, 481
BmsI	GCATC	3 cut(s)	288, 466, 475
BmtI	GCTAGC	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	10, 481
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	53, 480
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	53, 480
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	4 cut(s)	201, 289, 291, 414
BseYI	CCCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	10, 135, 480
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	3 cut(s)	136, 219, 367
BsnI	GGCC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	53, 55
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	4 cut(s)	202, 288, 292, 413
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	14, 232
BspOI	GCTAGC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	53, 480
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	2 cut(s)	105, 444
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	223, 297, 468
BstDEI	CTNAG	5 cut(s)	210, 275, 300, 400, 415
BstDSI	CCRYGG	1 cut(s)	53
BstEII	GGTNACC	3 cut(s)	115, 137, 308
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	55
BstMAI	GTCTC	3 cut(s)	136, 219, 367
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 239, 301, 476, 485
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	3 cut(s)	149, 454, 470
BstPI	GGTNACC	3 cut(s)	115, 137, 308
BstSCI	CCNGG	3 cut(s)	8, 237, 479
BstUI	CGCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	490
Cac8I	GCNNGC	3 cut(s)	223, 297, 468
CciI	TCATGA	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	12
Cfr42I	CCGCGG	1 cut(s)	56
CviAII	CATG	5 cut(s)	89, 146, 185, 451, 467
DdeI	CTNAG	5 cut(s)	210, 275, 300, 400, 415
Eam1104I	CTCTTC	2 cut(s)	105, 444
EarI	CTCTTC	2 cut(s)	105, 444
Eco24I	GRGCYC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	345
Eco91I	GGTNACC	3 cut(s)	115, 137, 308
EcoO65I	GGTNACC	3 cut(s)	115, 137, 308
EcoRII	CCWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	5 cut(s)	92, 149, 188, 454, 470
FatI	CATG	5 cut(s)	88, 145, 184, 450, 466
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	3 cut(s)	10, 135, 480
Hin1II	CATG	5 cut(s)	92, 149, 188, 454, 470
HinfI	GANTC	2 cut(s)	212, 268
HpaII	CCGG	3 cut(s)	10, 135, 480
HphI	GGTGA	6 cut(s)	42, 131, 142, 263, 320, 382
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	3 cut(s)	89, 103, 429
HpyAV	CCTTC	2 cut(s)	95, 402
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	184, 447, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 239, 301, 476, 485
HpyF3I	CTNAG	5 cut(s)	210, 275, 300, 400, 415
Hsp92II	CATG	5 cut(s)	92, 149, 188, 454, 470
KspI	CCGCGG	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	230
LweI	GCATC	3 cut(s)	288, 466, 475
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	5 cut(s)	115, 137, 148, 308, 433
MboII	GAAGA	3 cut(s)	122, 394, 431
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	93, 506
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	6 cut(s)	61, 106, 182, 253, 284, 361
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	2 cut(s)	144, 455
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	3 cut(s)	10, 135, 480
MspR9I	CCNGG	3 cut(s)	10, 239, 481
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	5 cut(s)	206, 239, 301, 476, 485
NciI	CCSGG	2 cut(s)	10, 481
NheI	GCTAGC	1 cut(s)	221
NlaIII	CATG	5 cut(s)	92, 149, 188, 454, 470
NlaIV	GGNNCC	2 cut(s)	14, 232
NmuCI	GTSAC	3 cut(s)	137, 148, 308
NspI	RCATGY	3 cut(s)	149, 454, 470
PaeI	GCATGC	1 cut(s)	470
PagI	TCATGA	1 cut(s)	88
PciI	ACATGT	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	237
PspEI	GGTNACC	3 cut(s)	115, 137, 308
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	14, 232
PspPI	GGNCC	1 cut(s)	12
RseI	CAYNNNNRTG	2 cut(s)	144, 455
SacII	CCGCGG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	10, 239, 481
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	3 cut(s)	288, 466, 475
Sfr303I	CCGCGG	1 cut(s)	56
SgrBI	CCGCGG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	144, 455
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	2 cut(s)	93, 506
SsiI	CCGC	2 cut(s)	53, 55
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	8, 237, 479
TaaI	ACNGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	93, 506
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	3 cut(s)	137, 148, 308
Tsp45I	GTSAC	3 cut(s)	137, 148, 308
TspDTI	ATGAA	2 cut(s)	77, 105
TspGWI	ACGGA	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	12
VspI	ATTAAT	1 cut(s)	387
XceI	RCATGY	3 cut(s)	149, 454, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.