Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Reverse (-)

45787667 .. 45788795

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTCCACAGTCTAAGTCCCAGCCACCACCACCGTCATCGGAGGACAAGACGGGGGCTCTGGATACTCCCCTTCGTGAAGTCGGGTTCGAGATTGAAGAAGTGACACCACAGAAGGTCTGTGGTTACCTCAGAGTCACCGAAAGGAACTGTCAGCCATTCAAGGTGTTACATGGAGGTGTGTCAGCTCTAATATCTGAGGCTCTGGCTAGCATAGGCGCTCACCTGGCTTCTGGTTTACAAAGGGTGGCTGGAATTCACCTCAGCATCAACCACATGAAGCGAGCTGACCTCGGTGACCTTATCTACGCTGAAGCCTCACCCATCAGCGTTGGCAAAACCATTCAGGTTTGGGAGGTGCGACTTTCGAAGATTGATCCTTCAAACTCAGACATCAAATCCTTAGTATCATCATCAAGAGTTACTCTTGTATGCAACATGCCTGTGCCGCAGCATGCAAAAGATGCAGGTGAAGCCCTCAAGAAGTATGCCAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

166

Amino Acids

17.82

Weight (kDa)

8.44

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	55 - 126	1.1e-13	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	458
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	98, 163, 384
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	188, 287
AluI	AGCT	2 cut(s)	188, 287
AlwI	GGATC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	6 cut(s)	130, 215, 251, 308, 312, 482
AsuII	TTCGAA	1 cut(s)	368
AsuNHI	GCTAGC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	2 cut(s)	449, 452
BlsI	GCNGC	2 cut(s)	450, 453
Bme1390I	CCNGG	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	276, 454
BmtI	GCTAGC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	292
BseMII	CTCAG	4 cut(s)	145, 189, 277, 402
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	4
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	1 cut(s)	449
BspCNI	CTCAG	4 cut(s)	144, 190, 276, 401
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	458
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	3 cut(s)	12, 36, 152
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	211, 285, 456
BstDEI	CTNAG	6 cut(s)	15, 131, 198, 263, 388, 403
BstEII	GGTNACC	2 cut(s)	125, 296
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 448, 464, 473
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	2 cut(s)	442, 458
BstPI	GGTNACC	2 cut(s)	125, 296
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	3 cut(s)	211, 285, 456
CfoI	GCGC	1 cut(s)	221
CviAII	CATG	4 cut(s)	173, 277, 439, 455
DdeI	CTNAG	6 cut(s)	15, 131, 198, 263, 388, 403
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	333
Eco91I	GGTNACC	2 cut(s)	125, 296
EcoO65I	GGTNACC	2 cut(s)	125, 296
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	4 cut(s)	176, 280, 442, 458
FaiI	YATR	8 cut(s)	174, 215, 278, 433, 440, 456, 489, 499
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	4 cut(s)	172, 276, 438, 454
Fnu4HI	GCNGC	2 cut(s)	449, 452
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	449, 452
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	2 cut(s)	449, 452
GsaI	CCCAGC	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	222
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	176, 280, 442, 458
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	135
HphI	GGTGA	6 cut(s)	130, 215, 251, 308, 312, 482
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	43, 134, 199, 391
Hpy188III	TCNNGA	5 cut(s)	62, 77, 91, 417, 481
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	83, 109, 390
HpyCH4III	ACNGT	3 cut(s)	12, 36, 152
HpyCH4V	TGCA	3 cut(s)	435, 458, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 448, 464, 473
HpyF3I	CTNAG	6 cut(s)	15, 131, 198, 263, 388, 403
Hsp92II	CATG	4 cut(s)	176, 280, 442, 458
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	2 cut(s)	276, 454
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	6 cut(s)	103, 125, 136, 168, 296, 421
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	110, 382
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	2 cut(s)	255, 494
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	9 cut(s)	37, 140, 170, 193, 272, 302, 328, 349, 488
MslI	CAYNNNNRTG	2 cut(s)	177, 443
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	4 cut(s)	227, 448, 464, 473
NdeII	GATC	1 cut(s)	376
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	4 cut(s)	176, 280, 442, 458
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	103, 136, 296
NspI	RCATGY	2 cut(s)	442, 458
NspV	TTCGAA	1 cut(s)	368
PaeI	GCATGC	1 cut(s)	458
PaqCI	CACCTGC	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	450, 453
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	225
PspEI	GGTNACC	2 cut(s)	125, 296
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	177, 443
SatI	GCNGC	2 cut(s)	449, 452
Sau3AI	GATC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	2 cut(s)	276, 454
SfuI	TTCGAA	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	177, 443
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	2 cut(s)	255, 494
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	3 cut(s)	12, 36, 152
TaqI	TCGA	2 cut(s)	90, 368
TasI	AATT	2 cut(s)	255, 494
TauI	GCSGC	1 cut(s)	451
TseFI	GTSAC	3 cut(s)	103, 136, 296
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	3 cut(s)	103, 136, 296
TspDTI	ATGAA	1 cut(s)	293
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	2 cut(s)	442, 458
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.