Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Reverse (-)

51414168 .. 51415632

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTCCCCAGTCTAAGTCCCAGCCACCACCACCGTCATCGGAGGACAAGACGGGGGCTCTGGATACTCCCCTTCGTGAAGTCGGGTTCGAGATTGAAGAAGTGACACCACAGAAGGTCTGTGGTTACCTCAGAGTGACCGAAAGGAACTGTCAGCAGCCATTCAAGGTGTTACATGGAGGTGTGTCAGCTCTAATATCTGAGGCTCTGGCTAGCATAGGCGCTCACCTGGCTTCTGGTTTAAAAAGGGTGGCTGGAATTCACCTCAGCATCAACCACATGAAGCGAGCTGAGCTCGGTGACCTTATCTACGCTGAAGCCTCACCCATCAGCGTTGGCAAAACCATTCAGGTTTGGGAGGTGCGACTTTCGAAGATTGATCCTTCAAACTCAGACATCAAATCCTTAGTATCATCATCAAGAGTTACTCTTCTATGCAACTTGCCTGTGCCGCAGCATGCAAAAGATGCAGGTGAAGCCCTCAAGAAGTATGCCAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

167

Amino Acids

17.96

Weight (kDa)

8.78

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	56 - 127	1.4e-13	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	336
AgsI	TTSAA	3 cut(s)	98, 166, 387
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	191, 290, 295
AluI	AGCT	3 cut(s)	191, 290, 295
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	157, 454
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	5 cut(s)	218, 254, 311, 315, 485
AsuII	TTCGAA	1 cut(s)	371
AsuNHI	GCTAGC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	61, 297
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	169, 466
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	461
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	3 cut(s)	158, 452, 455
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	3 cut(s)	159, 453, 456
Bme1390I	CCNGG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	2 cut(s)	279, 457
BmtI	GCTAGC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	230
BseMII	CTCAG	5 cut(s)	145, 192, 280, 282, 405
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	169, 466
BseYI	CCCAGC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	4
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	61, 297
Bsp143I	GATC	1 cut(s)	379
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	452
BspCNI	CTCAG	5 cut(s)	144, 193, 279, 283, 404
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	461
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	36, 152
Bst6I	CTCTTC	1 cut(s)	435
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	214, 288, 459
BstDEI	CTNAG	7 cut(s)	15, 131, 201, 266, 291, 391, 406
BstEII	GGTNACC	2 cut(s)	125, 299
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 292, 451, 467, 476
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	461
BstPI	GGTNACC	2 cut(s)	125, 299
BstSCI	CCNGG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	169, 466
BsuI	GTATCC	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	3 cut(s)	214, 288, 459
CfoI	GCGC	1 cut(s)	224
CviAII	CATG	3 cut(s)	176, 280, 458
DdeI	CTNAG	7 cut(s)	15, 131, 201, 266, 291, 391, 406
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	2 cut(s)	61, 297
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	336
Eco91I	GGTNACC	2 cut(s)	125, 299
EcoICRI	GAGCTC	1 cut(s)	295
EcoO65I	GGTNACC	2 cut(s)	125, 299
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	228
EcoT38I	GRGCYC	2 cut(s)	61, 297
FaeI	CATG	3 cut(s)	179, 283, 461
FaiI	YATR	7 cut(s)	177, 218, 281, 436, 459, 492, 502
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	3 cut(s)	175, 279, 457
Fnu4HI	GCNGC	3 cut(s)	158, 452, 455
FriOI	GRGCYC	2 cut(s)	61, 297
Fsp4HI	GCNGC	3 cut(s)	158, 452, 455
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	3 cut(s)	158, 452, 455
GsaI	CCCAGC	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	225
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	179, 283, 461
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HphI	GGTGA	5 cut(s)	218, 254, 311, 315, 485
Hpy188I	TCNGA	4 cut(s)	43, 134, 202, 394
Hpy188III	TCNNGA	5 cut(s)	62, 77, 91, 420, 484
HpyAV	CCTTC	3 cut(s)	83, 109, 393
HpyCH4III	ACNGT	2 cut(s)	36, 152
HpyCH4V	TGCA	3 cut(s)	438, 461, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 292, 451, 467, 476
HpyF3I	CTNAG	7 cut(s)	15, 131, 201, 266, 291, 391, 406
Hsp92II	CATG	3 cut(s)	179, 283, 461
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	169, 466
LweI	GCATC	2 cut(s)	279, 457
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	6 cut(s)	103, 125, 136, 171, 299, 424
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	3 cut(s)	110, 385, 422
MhlI	GDGCHC	2 cut(s)	61, 297
MluCI	AATT	2 cut(s)	258, 497
MnlI	CCTC	8 cut(s)	37, 140, 173, 196, 275, 331, 352, 491
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	5 cut(s)	230, 292, 451, 467, 476
NdeII	GATC	1 cut(s)	379
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	3 cut(s)	179, 283, 461
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	103, 136, 299
NspI	RCATGY	1 cut(s)	461
NspV	TTCGAA	1 cut(s)	371
PaeI	GCATGC	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	159, 453, 456
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	228
PspEI	GGTNACC	2 cut(s)	125, 299
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	3 cut(s)	158, 452, 455
Sau3AI	GATC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	61, 297
SfaNI	GCATC	2 cut(s)	279, 457
SfuI	TTCGAA	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	2 cut(s)	258, 497
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	36, 152
TaqI	TCGA	2 cut(s)	90, 371
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	258, 497
TauI	GCSGC	1 cut(s)	454
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TseFI	GTSAC	3 cut(s)	103, 136, 299
TseI	GCWGC	2 cut(s)	157, 454
Tsp45I	GTSAC	3 cut(s)	103, 136, 299
TspDTI	ATGAA	1 cut(s)	296
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	461
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.