Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009221.1

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Reverse (-)

20454 .. 21535

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009221.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggctcctcagtctcagtcccagccaccaccaccgtcatcggaggacaagacggaggctctggatgctctgcttcatgcattcgggttccagattgaagaagtgacaccccgaaaggtctctggtcacatcagagtcaccgaaaagagctgtcaggtgttacatggaggtgtgtcagctctgatatccgagtctctggctagcatgggagctcacctggcttctagtttacaaagggtggctggaattcaactcagcatcaaccacttgaaccaagctgagctcggtgatcttatctacactgaagcctcacccatcagcgttggcaaaaccattcaggtttgggaggtgcgactttcaaagatagatccttcaaactcagacatcaaatccctagtatcatcatcaagagttactcttctgtgcaacatgcatgtgccagagcatgcaaaagatgcaggtcaagccctcaagaagtatgccaaattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

163

Amino Acids

17.5

Weight (kDa)

6.65

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	449
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	324
AgsI	TTSAA	5 cut(s)	98, 251, 271, 360, 375
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	5 cut(s)	150, 179, 212, 278, 283
AluI	AGCT	5 cut(s)	150, 179, 212, 278, 283
Alw21I	GWGCWC	2 cut(s)	214, 285
Alw26I	GTCTC	3 cut(s)	18, 124, 198
AlwI	GGATC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	246
AsuHPI	GGTGA	4 cut(s)	130, 206, 299, 303
AsuNHI	GCTAGC	1 cut(s)	200
BanII	GRGCYC	2 cut(s)	214, 285
Bbv12I	GWGCWC	2 cut(s)	214, 285
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	3 cut(s)	18, 124, 198
BfaI	CTAG	3 cut(s)	201, 225, 395
BfuAI	ACCTGC	1 cut(s)	449
BlpI	GCTNAGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	6, 89
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	3 cut(s)	55, 267, 445
BmtI	GCTAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	70
BseMII	CTCAG	5 cut(s)	23, 29, 268, 270, 393
BseYI	CCCAGC	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	214, 285
BslFI	GGGAC	1 cut(s)	4
BsmAI	GTCTC	3 cut(s)	18, 124, 198
BsmFI	GGGAC	1 cut(s)	4
BsmI	GAATGC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	214, 285
Bsp143I	GATC	2 cut(s)	289, 367
Bsp1720I	GCTNAGC	1 cut(s)	279
BspCNI	CTCAG	5 cut(s)	22, 28, 267, 271, 392
BspLI	GGNNCC	2 cut(s)	6, 89
BspMI	ACCTGC	1 cut(s)	449
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	124
BssMI	GATC	2 cut(s)	289, 367
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	423
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	202, 447
BstDEI	CTNAG	5 cut(s)	9, 15, 254, 279, 379
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	292, 370
BstMAI	GTCTC	3 cut(s)	18, 124, 198
BstMBI	GATC	2 cut(s)	289, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 218, 455, 464
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	3 cut(s)	433, 437, 449
BstSCI	CCNGG	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	202, 447
CviAII	CATG	6 cut(s)	77, 164, 205, 430, 434, 446
DdeI	CTNAG	5 cut(s)	9, 15, 254, 279, 379
DpnI	GATC	2 cut(s)	291, 369
DpnII	GATC	2 cut(s)	289, 367
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	2 cut(s)	212, 283
Eco24I	GRGCYC	2 cut(s)	214, 285
Eco31I	GGTCTC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	186
Eco53kI	GAGCTC	2 cut(s)	212, 283
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	2 cut(s)	212, 283
EcoRI	GAATTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	216
EcoRV	GATATC	1 cut(s)	186
EcoT22I	ATGCAT	2 cut(s)	82, 435
EcoT38I	GRGCYC	2 cut(s)	214, 285
FaeI	CATG	6 cut(s)	80, 167, 208, 433, 437, 449
FaiI	YATR	8 cut(s)	78, 165, 206, 431, 435, 447, 480, 490
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	6 cut(s)	76, 163, 204, 429, 433, 445
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	214, 285
FspBI	CTAG	3 cut(s)	201, 225, 395
GsaI	CCCAGC	1 cut(s)	25
Hin1II	CATG	6 cut(s)	80, 167, 208, 433, 437, 449
HinfI	GANTC	2 cut(s)	135, 191
HphI	GGTGA	4 cut(s)	130, 206, 299, 303
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	5 cut(s)	43, 134, 183, 190, 382
Hpy188III	TCNNGA	4 cut(s)	62, 91, 408, 472
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	80, 426, 433, 449, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 218, 455, 464
HpyF3I	CTNAG	5 cut(s)	9, 15, 254, 279, 379
Hsp92II	CATG	6 cut(s)	80, 167, 208, 433, 437, 449
Kzo9I	GATC	2 cut(s)	289, 367
LmnI	GCTCC	2 cut(s)	10, 209
LweI	GCATC	3 cut(s)	55, 267, 445
MaeI	CTAG	3 cut(s)	201, 225, 395
MaeIII	GTNAC	5 cut(s)	103, 125, 136, 159, 412
MalI	GATC	2 cut(s)	291, 369
MboI	GATC	2 cut(s)	289, 367
MboII	GAAGA	2 cut(s)	110, 410
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	214, 285
MluCI	AATT	2 cut(s)	246, 485
MlyI	GAGTC	2 cut(s)	144, 200
MnlI	CCTC	7 cut(s)	18, 37, 49, 161, 319, 340, 479
Mph1103I	ATGCAT	2 cut(s)	82, 435
MslI	CAYNNNNRTG	2 cut(s)	168, 434
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	65, 218, 455, 464
NdeII	GATC	2 cut(s)	289, 367
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	6 cut(s)	80, 167, 208, 433, 437, 449
NlaIV	GGNNCC	2 cut(s)	6, 89
NmuCI	GTSAC	3 cut(s)	103, 125, 136
NsiI	ATGCAT	2 cut(s)	82, 435
NspI	RCATGY	3 cut(s)	433, 437, 449
PaeI	GCATGC	1 cut(s)	449
PctI	GAATGC	1 cut(s)	80
PleI	GAGTC	2 cut(s)	143, 199
PpsI	GAGTC	2 cut(s)	143, 199
Psp124BI	GAGCTC	2 cut(s)	214, 285
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	6, 89
PsuI	RGATCY	1 cut(s)	367
RseI	CAYNNNNRTG	2 cut(s)	168, 434
SacI	GAGCTC	2 cut(s)	214, 285
Sau3AI	GATC	2 cut(s)	289, 367
SchI	GAGTC	2 cut(s)	144, 200
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	2 cut(s)	214, 285
SfaNI	GCATC	3 cut(s)	55, 267, 445
SmiMI	CAYNNNNRTG	2 cut(s)	168, 434
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	2 cut(s)	246, 485
SspMI	CTAG	3 cut(s)	201, 225, 395
SstI	GAGCTC	2 cut(s)	214, 285
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	36
TasI	AATT	2 cut(s)	246, 485
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	103, 125, 136
Tsp45I	GTSAC	3 cut(s)	103, 125, 136
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	3 cut(s)	433, 437, 449
XspI	CTAG	3 cut(s)	201, 225, 395
Zsp2I	ATGCAT	2 cut(s)	82, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.