Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009221.1

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Reverse (-)

24988 .. 26084

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009221.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggctccccagtctcagtcccagccaccaccaccgtcatcggaggacaagacgggggctctggatactccccttcgtgaagtcgggttcgagattgaagaagtgacaccacagaaggtctgtggttacctcagagtgaccgaaaggaactgtcagccattcaaggtgttacatggaggtgtgtcagctctaatatctgaggctctggctagcataggcgctcacctggcttctggtttacaaagggtggctggaattcacctcagcatcaaccacatgaagcgagctgagctcggtgaccttatctacgctgaagcctcacccatcagcgttggcaaaaccattcaggtttgggaggtgcgactttcaaagattgatccttcgaactcagacatcaaatccttagtatcatcatcaagagttactcttgtatgcaacatgcctgtgccacagcatgcaaaagatgcaggtgaagccctcaagaagtatgccaaattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

166

Amino Acids

17.84

Weight (kDa)

7.75

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	98, 163, 369
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	188, 287, 292
AluI	AGCT	3 cut(s)	188, 287, 292
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	5 cut(s)	215, 251, 308, 312, 482
AsuII	TTCGAA	1 cut(s)	383
AsuNHI	GCTAGC	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	61, 294
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	2 cut(s)	276, 454
BmtI	GCTAGC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	227
BseMII	CTCAG	6 cut(s)	29, 145, 189, 277, 279, 402
BseNI	ACTGG	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	4
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	4
Bsp119I	TTCGAA	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	61, 294
Bsp143I	GATC	1 cut(s)	376
Bsp1720I	GCTNAGC	1 cut(s)	288
BspCNI	CTCAG	6 cut(s)	28, 144, 190, 276, 280, 401
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	458
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	36, 152
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	211, 285, 456
BstDEI	CTNAG	7 cut(s)	15, 131, 198, 263, 288, 388, 403
BstEII	GGTNACC	2 cut(s)	125, 296
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 289, 464, 473
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	2 cut(s)	442, 458
BstPI	GGTNACC	2 cut(s)	125, 296
BstSCI	CCNGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	3 cut(s)	211, 285, 456
CfoI	GCGC	1 cut(s)	221
CviAII	CATG	4 cut(s)	173, 277, 439, 455
DdeI	CTNAG	7 cut(s)	15, 131, 198, 263, 288, 388, 403
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	2 cut(s)	61, 294
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	333
Eco91I	GGTNACC	2 cut(s)	125, 296
EcoICRI	GAGCTC	1 cut(s)	292
EcoO65I	GGTNACC	2 cut(s)	125, 296
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	61, 294
FaeI	CATG	4 cut(s)	176, 280, 442, 458
FaiI	YATR	8 cut(s)	174, 215, 278, 433, 440, 456, 489, 499
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	4 cut(s)	172, 276, 438, 454
FriOI	GRGCYC	2 cut(s)	61, 294
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	222
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	176, 280, 442, 458
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HphI	GGTGA	5 cut(s)	215, 251, 308, 312, 482
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	43, 134, 199, 391
Hpy188III	TCNNGA	5 cut(s)	62, 77, 91, 417, 481
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	83, 109, 390
HpyCH4III	ACNGT	2 cut(s)	36, 152
HpyCH4V	TGCA	3 cut(s)	435, 458, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 289, 464, 473
HpyF3I	CTNAG	7 cut(s)	15, 131, 198, 263, 288, 388, 403
Hsp92II	CATG	4 cut(s)	176, 280, 442, 458
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	10
LweI	GCATC	2 cut(s)	276, 454
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	6 cut(s)	103, 125, 136, 168, 296, 421
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	61, 294
MluCI	AATT	2 cut(s)	255, 494
MnlI	CCTC	8 cut(s)	37, 140, 170, 193, 272, 328, 349, 488
MslI	CAYNNNNRTG	2 cut(s)	177, 443
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	4 cut(s)	227, 289, 464, 473
NdeII	GATC	1 cut(s)	376
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	4 cut(s)	176, 280, 442, 458
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	103, 136, 296
NspI	RCATGY	2 cut(s)	442, 458
NspV	TTCGAA	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	458
PaqCI	CACCTGC	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	225
PspEI	GGTNACC	2 cut(s)	125, 296
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	177, 443
SacI	GAGCTC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	61, 294
SfaNI	GCATC	2 cut(s)	276, 454
SfuI	TTCGAA	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	177, 443
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	2 cut(s)	255, 494
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	36, 152
TaqI	TCGA	2 cut(s)	90, 383
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	255, 494
TseFI	GTSAC	3 cut(s)	103, 136, 296
Tsp45I	GTSAC	3 cut(s)	103, 136, 296
TspDTI	ATGAA	1 cut(s)	293
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	2 cut(s)	442, 458
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.