Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Reverse (-)

24729813 .. 24731929

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTCCCCAGTCGTCTCAGTCCCAGCCGCCGCCACCGTCACCGGAGGACAAGACCGGGGCTATTGATGCTCCACTTCATGCAGTTGGGTTCGTGATTGAAGAAGTCACACCACAGAAGGTCTGCGGTCACCTCAGAGTCACCGAAAGGAGCTGTCAGCCATTCAAGGTGTTACATGGAGGGGTGTCAGCTCTAGTATCTGAGGCTCTGGCTAGCATAGGAGCTCACCTGGCTTCTGGTTTACAAAGGGTGGCTGGAATTCACCTCAGCATCAACCACATGAAGCGAGCTGAGCTCGGTGATCTTATCTATGGGGAAGCCGTACCCATCAGCGTTGGCAAAACCATTCAGGTTTGGGAAGTGCGACTTTCAAAGATTGATCCTTCGAACTCAGACATCAAATCCCTTGTATCATCAGCAAGAGTCACTCTTCTGTGCAACATGCCTGTACCACAACATGCAAAAGATGCAGGTGAAGCCCTCAAGAAGTATGCCAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

168

Amino Acids

17.72

Weight (kDa)

8.47

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	56 - 127	2e-12	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AciI	CCGC	3 cut(s)	29, 32, 126
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	258
AfaI	GTAC	2 cut(s)	324, 450
AgsI	TTSAA	3 cut(s)	101, 166, 372
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	5 cut(s)	153, 191, 224, 290, 295
AluI	AGCT	5 cut(s)	153, 191, 224, 290, 295
Alw21I	GWGCWC	2 cut(s)	226, 297
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	258
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	7 cut(s)	33, 122, 133, 218, 254, 311, 485
AsuII	TTCGAA	1 cut(s)	386
AsuNHI	GCTAGC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	226, 297
Bbv12I	GWGCWC	2 cut(s)	226, 297
BbvCI	CCTCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	194, 213
BfuAI	ACCTGC	1 cut(s)	461
BisI	GCNGC	2 cut(s)	29, 32
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	2 cut(s)	30, 33
Bme1390I	CCNGG	2 cut(s)	58, 230
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	58, 230
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	3 cut(s)	58, 279, 457
BmtI	GCTAGC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	57
BseMII	CTCAG	6 cut(s)	32, 148, 192, 280, 282, 405
BseNI	ACTGG	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	226, 297
BsiSI	CCGG	2 cut(s)	44, 57
BslFI	GGGAC	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	7
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	226, 297
Bsp143I	GATC	2 cut(s)	301, 379
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	3 cut(s)	29, 32, 126
BspCNI	CTCAG	6 cut(s)	31, 147, 193, 279, 283, 404
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	461
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	301, 379
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	435
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	214, 288
BstDEI	CTNAG	6 cut(s)	18, 134, 201, 266, 291, 391
BstEII	GGTNACC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	304, 382
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	301, 379
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 230, 292, 467, 476
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	2 cut(s)	445, 461
BstPI	GGTNACC	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	56, 228
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	214, 288
Csp6I	GTAC	2 cut(s)	323, 449
CviAII	CATG	5 cut(s)	80, 176, 280, 442, 458
CviQI	GTAC	2 cut(s)	323, 449
DdeI	CTNAG	6 cut(s)	18, 134, 201, 266, 291, 391
DpnI	GATC	2 cut(s)	303, 381
DpnII	GATC	2 cut(s)	301, 379
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	2 cut(s)	224, 295
Eco24I	GRGCYC	2 cut(s)	226, 297
Eco53kI	GAGCTC	2 cut(s)	224, 295
Eco91I	GGTNACC	1 cut(s)	128
EcoICRI	GAGCTC	2 cut(s)	224, 295
EcoO65I	GGTNACC	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	228
EcoT38I	GRGCYC	2 cut(s)	226, 297
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	5 cut(s)	83, 179, 283, 445, 461
FaiI	YATR	9 cut(s)	81, 177, 218, 281, 312, 443, 459, 492, 502
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	5 cut(s)	79, 175, 279, 441, 457
Fnu4HI	GCNGC	2 cut(s)	29, 32
FriOI	GRGCYC	2 cut(s)	226, 297
Fsp4HI	GCNGC	2 cut(s)	29, 32
FspBI	CTAG	2 cut(s)	194, 213
GluI	GCNGC	2 cut(s)	29, 32
GsaI	CCCAGC	1 cut(s)	28
HapII	CCGG	2 cut(s)	44, 57
Hin1II	CATG	5 cut(s)	83, 179, 283, 445, 461
HinfI	GANTC	2 cut(s)	138, 423
HpaII	CCGG	2 cut(s)	44, 57
HphI	GGTGA	7 cut(s)	33, 122, 133, 218, 254, 311, 485
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	137, 202, 394
Hpy188III	TCNNGA	2 cut(s)	94, 484
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	112, 393
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	83, 438, 461, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 230, 292, 467, 476
HpyF3I	CTNAG	6 cut(s)	18, 134, 201, 266, 291, 391
Hsp92II	CATG	5 cut(s)	83, 179, 283, 445, 461
Kzo9I	GATC	2 cut(s)	301, 379
LmnI	GCTCC	4 cut(s)	10, 76, 150, 221
LweI	GCATC	3 cut(s)	58, 279, 457
MaeI	CTAG	2 cut(s)	194, 213
MaeIII	GTNAC	6 cut(s)	39, 106, 128, 139, 171, 424
MalI	GATC	2 cut(s)	303, 381
MboI	GATC	2 cut(s)	301, 379
MboII	GAAGA	2 cut(s)	113, 422
MhlI	GDGCHC	2 cut(s)	226, 297
MluCI	AATT	2 cut(s)	258, 497
MlyI	GAGTC	2 cut(s)	147, 432
MnlI	CCTC	6 cut(s)	40, 143, 173, 196, 275, 491
MspI	CCGG	2 cut(s)	44, 57
MspR9I	CCNGG	2 cut(s)	58, 230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	5 cut(s)	68, 230, 292, 467, 476
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	301, 379
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	5 cut(s)	83, 179, 283, 445, 461
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	5 cut(s)	39, 106, 128, 139, 424
NspI	RCATGY	2 cut(s)	445, 461
NspV	TTCGAA	1 cut(s)	386
PaqCI	CACCTGC	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	30, 33
PleI	GAGTC	2 cut(s)	146, 431
PpsI	GAGTC	2 cut(s)	146, 431
Psp124BI	GAGCTC	2 cut(s)	226, 297
Psp6I	CCWGG	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	2 cut(s)	324, 450
RsaNI	GTAC	2 cut(s)	323, 449
SacI	GAGCTC	2 cut(s)	226, 297
SatI	GCNGC	2 cut(s)	29, 32
Sau3AI	GATC	2 cut(s)	301, 379
SchI	GAGTC	2 cut(s)	147, 432
ScrFI	CCNGG	2 cut(s)	58, 230
SduI	GDGCHC	2 cut(s)	226, 297
SfaNI	GCATC	3 cut(s)	58, 279, 457
SfuI	TTCGAA	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	258, 497
SsiI	CCGC	3 cut(s)	29, 32, 126
SspMI	CTAG	2 cut(s)	194, 213
SstI	GAGCTC	2 cut(s)	226, 297
StyD4I	CCNGG	2 cut(s)	56, 228
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	258, 497
TauI	GCSGC	2 cut(s)	31, 34
TseFI	GTSAC	5 cut(s)	39, 106, 128, 139, 424
Tsp45I	GTSAC	5 cut(s)	39, 106, 128, 139, 424
TspDTI	ATGAA	2 cut(s)	68, 296
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	2 cut(s)	445, 461
XspI	CTAG	2 cut(s)	194, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.