Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Forward (+)

10271194 .. 10272828

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1133600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTTCTCAGTCCCAATCTCAGCCATCAGCACCGCCATCGAAGACATCGGTTCTGGCAGCTCCACTAAGTGCATTAGGGTTCGAGCTTGAAGAGATAACACCCAAAAAGGTCTCTGGTCGCCTCCATGTCACTGAAAATTGCGTCCAGCAGCCATTCAAGGTGCTACATGGAGGGGTATCAGCACTCATCTCTGAGGCCCTGGCTAGCATCGGAGCTCACATGGCCTCTGGTTTCCAAAGGGTGGCCGGGATTCACCTCAGCATCAACCATTTGAAGCGCGCCGAGCTCGGCGACCATATCTTTGCCGAAGCCTCCCCGGTCAACGTCGGCAAAACCATTCAGGTTTGGGAGGCAACAATATGGAAGATTGATCCTTCAAACTCAAACATCAAATCCATAGTATCCTCATCAAGAGTTACTCTTTTAAGCAACATGCATGTGCCGGAGCATGCGAAAGATGCCGGTGAAATGCTCAAGATGTATGCCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

166

Amino Acids

17.64

Weight (kDa)

8.77

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	54 - 126	1.7e-15	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	496
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	92, 160, 277, 381
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	4 cut(s)	62, 88, 218, 289
AluI	AGCT	4 cut(s)	62, 88, 218, 289
Alw21I	GWGCWC	2 cut(s)	220, 291
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	3 cut(s)	198, 225, 246
ApeKI	GCWGC	2 cut(s)	59, 151
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	2 cut(s)	282, 284
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	2 cut(s)	250, 320
AsuHPI	GGTGA	2 cut(s)	248, 479
AsuNHI	GCTAGC	1 cut(s)	206
BanII	GRGCYC	2 cut(s)	220, 291
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	220, 291
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	71, 163
BccI	CCATC	2 cut(s)	34, 46
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	250, 320
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	415
BisI	GCNGC	2 cut(s)	60, 152
BlsI	GCNGC	2 cut(s)	61, 153
Bme1390I	CCNGG	3 cut(s)	203, 250, 320
BmgT120I	GGNCC	1 cut(s)	199
BmrFI	CCNGG	3 cut(s)	203, 250, 320
BmsI	GCATC	3 cut(s)	219, 273, 451
BmtI	GCTAGC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	250, 320
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	201, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	201, 318
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	4 cut(s)	23, 35, 186, 274
BsePI	GCGCGC	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	71, 163
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	200, 227, 248
BsiHKAI	GWGCWC	2 cut(s)	220, 291
BsiSI	CCGG	4 cut(s)	249, 320, 446, 465
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	200, 227, 248
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	220, 291
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	3 cut(s)	200, 227, 248
BspCNI	CTCAG	4 cut(s)	22, 34, 187, 273
BspFNI	CGCG	1 cut(s)	282
BspOI	GCTAGC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	464
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	201, 318
BssHII	GCGCGC	1 cut(s)	280
BssMI	GATC	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	208, 282, 453
BstDEI	CTNAG	5 cut(s)	9, 21, 68, 195, 260
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	282, 284
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 286, 461
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	3 cut(s)	439, 443, 455
BstSCI	CCNGG	3 cut(s)	201, 248, 318
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	71, 163
BstV2I	GAAGAC	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	200, 227, 248
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	208, 282, 453
CfoI	GCGC	2 cut(s)	282, 284
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	199
CseI	GACGC	1 cut(s)	133
CviAII	CATG	6 cut(s)	128, 170, 223, 436, 440, 452
DdeI	CTNAG	5 cut(s)	9, 21, 68, 195, 260
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
DraIII	CACNNNGTG	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	2 cut(s)	218, 289
Eco24I	GRGCYC	2 cut(s)	220, 291
Eco31I	GGTCTC	1 cut(s)	118
Eco53kI	GAGCTC	2 cut(s)	218, 289
EcoICRI	GAGCTC	2 cut(s)	218, 289
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	441
EcoT38I	GRGCYC	2 cut(s)	220, 291
FaeI	CATG	6 cut(s)	131, 173, 226, 439, 443, 455
FatI	CATG	6 cut(s)	127, 169, 222, 435, 439, 451
Fnu4HI	GCNGC	2 cut(s)	60, 152
FriOI	GRGCYC	2 cut(s)	220, 291
Fsp4HI	GCNGC	2 cut(s)	60, 152
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	2 cut(s)	281, 283
GluI	GCNGC	2 cut(s)	60, 152
HaeIII	GGCC	3 cut(s)	200, 227, 248
HapII	CCGG	4 cut(s)	249, 320, 446, 465
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	282, 284
Hin1II	CATG	6 cut(s)	131, 173, 226, 439, 443, 455
Hin6I	GCGC	2 cut(s)	280, 282
HinP1I	GCGC	2 cut(s)	280, 282
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	4 cut(s)	249, 320, 446, 465
HphI	GGTGA	2 cut(s)	248, 479
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	196, 215
Hpy188III	TCNNGA	2 cut(s)	414, 478
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	387
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	74, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 286, 461
HpyF3I	CTNAG	5 cut(s)	9, 21, 68, 195, 260
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	131, 173, 226, 439, 443, 455
HspAI	GCGC	2 cut(s)	280, 282
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	3 cut(s)	67, 215, 448
Lsp1109I	GCAGC	2 cut(s)	71, 163
LweI	GCATC	3 cut(s)	219, 273, 451
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	130, 418
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	3 cut(s)	55, 104, 379
MhlI	GDGCHC	2 cut(s)	220, 291
MluCI	AATT	2 cut(s)	139, 491
MnlI	CCTC	8 cut(s)	134, 167, 190, 238, 269, 325, 346, 418
Mph1103I	ATGCAT	1 cut(s)	441
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	4 cut(s)	249, 320, 446, 465
MspR9I	CCNGG	3 cut(s)	203, 250, 320
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	224, 286, 461
NciI	CCSGG	2 cut(s)	250, 320
NdeII	GATC	1 cut(s)	373
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	6 cut(s)	131, 173, 226, 439, 443, 455
NmeAIII	GCCGAG	2 cut(s)	270, 310
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	3 cut(s)	439, 443, 455
PaeI	GCATGC	1 cut(s)	455
PauI	GCGCGC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	61, 153
PsiI	TTATAA	1 cut(s)	496
Psp124BI	GAGCTC	2 cut(s)	220, 291
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	199
PteI	GCGCGC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	2 cut(s)	220, 291
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	2 cut(s)	60, 152
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	1 cut(s)	199
ScrFI	CCNGG	3 cut(s)	203, 250, 320
SduI	GDGCHC	2 cut(s)	220, 291
SetI	ASST	9 cut(s)	64, 90, 114, 165, 220, 261, 291, 330, 348
SfaNI	GCATC	3 cut(s)	219, 273, 451
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	2 cut(s)	139, 491
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	2 cut(s)	220, 291
StyD4I	CCNGG	3 cut(s)	201, 248, 318
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	41, 84
TasI	AATT	2 cut(s)	139, 491
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	59, 151
Tsp45I	GTSAC	1 cut(s)	130
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	244
XceI	RCATGY	3 cut(s)	439, 443, 455
XspI	CTAG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.