Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005819

Physical Location & Seq

Genomic Coordinates Reverse (-)

17876989 .. 17879270

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGTACGAGCTTCATCGTCGAAGAAAGGAGGATCAAAAGGAGGAGACAAAGACGACGCAGAGTCAAAACAGAGGAAGAGATTAAAAACCCTAGCTCTCGATAACCAATTGCTCTCTGATTCTCCGGCGAAATCTCATTCCTCTCTCAAACCTTCAAAGCAAGTTCTCAAACACCATGGCACCGACATCATCCGCAAATCTCAGCGCAAGAATCGCTTTCTCTTCTCCTTCCCTGGTCTTCTCGCTCCTATCTCCGCCGCTACCATCGGCGATCTCGATCGATTATCTACCAAAAACCCTGTCCTCTACCTTAATTTCCCACAGGGTCGTATGAAACTTTTTGGAACGATTTTGTATCCGAAGAACAGATACTTGACTCTTCAATTCTCTAGAGGAGGCAAAAATGTCTTATGTGATGATTATTTTGATAACATGATTGTGTTCTCTGAGTCATGGTGGATTGGGACAAAAGAGGAGAATCCAGAAGAAGCTCGTCTTGATTTCCCTAAAGAACTAGCTCAGGCAGAGAATACTGAGTTTGATTTCCAAGGCGGTGCTGGAGGAGCAGCTTCGGTGAAGAAGCTGGCGAGTCCTGAAATTGGTAGCCAACCAACAGAGACAGACTCACCTGAAGTTGACAACGAGGATGTTTTGTCTGAGGATGGAGAATTCTTGGACGATAAGATCCAAGTAACACCACCAGTTCAATTAACACCACCAGTCCAAGTAACTCCGGTCCGACAGTCTCAGAGAAATTCTGGGAAGAAATTCAACTTTGCAGAAACTTCCTCAGAGGCCTCCTCTGGTGAAAGTGAAGGCAATACATCTGATGAAGATGAGAAACCTCTGTTGGAACCTGAATCTTCAACAAGAAGTCGTGAGGAATCTCAAGATGGTAATGGTATTACTGCATCTGCAAGCAAGTTGCCTGAAGAACTTCCGGCTAAAAGGGAAAAACTAAAGAGCAAAGACAGTAAGCTCGTTCAAGCTACTTTGTCTAACCTTTTCAAGAAAGCTGAGGAGAAAACAGCTGGAACTTCCAAGGCTAAATCATCCTCAAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

38.9

Weight (kDa)

6.89

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48380 AT1G48380
fragaria_vesca	FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410
malus_domestica	MD14G1245900.v1.1
prunus_persica	Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1
pyrus_communis	pycom14g20680
rosa_chinensis	RchiOBHm_Chr7g0177071
rosa_laevigata	RLG00000005559
rosa_multiflora	Rmu_sc0005310.1_g000026
rosa_roxburghii	Rroxscaffold_3G00276120
rosa_rugosa	Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500
rosa_samantha	Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000
rosa_wichuraiana	Rw7G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	4 cut(s)	193, 255, 258, 552
AclWI	GGATC	2 cut(s)	40, 679
AcsI	RAATTY	3 cut(s)	668, 754, 767
AcuI	CTGAAG	2 cut(s)	651, 951
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	7 cut(s)	156, 383, 707, 772, 867, 986, 1009
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
Alw26I	GTCTC	3 cut(s)	39, 611, 750
AlwI	GGATC	2 cut(s)	40, 679
AoxI	GGCC	1 cut(s)	795
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	3 cut(s)	668, 754, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
Asp700I	GAANNNNTTC	2 cut(s)	767, 936
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	736
AsuHPI	GGTGA	3 cut(s)	586, 618, 818
AvaII	GGWCC	1 cut(s)	736
BanI	GGYRCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BbsI	GAAGAC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	1017
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	3 cut(s)	272, 656, 887
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	366
BcoDI	GTCTC	3 cut(s)	39, 611, 750
BfaI	CTAG	3 cut(s)	92, 390, 515
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	2 cut(s)	258, 567
BlsI	GCNGC	2 cut(s)	259, 568
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	736
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	2 cut(s)	181, 855
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	920
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	4 cut(s)	608, 640, 785, 817
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	2 cut(s)	519, 1017
BpuEI	CTTGAG	1 cut(s)	873
Bsa29I	ATCGAT	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	175, 232, 547, 1041
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	2 cut(s)	701, 719
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	280
BseDI	CCNNGG	4 cut(s)	175, 232, 547, 1041
BseGI	GGATG	4 cut(s)	189, 652, 667, 1052
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	8 cut(s)	215, 438, 525, 533, 648, 761, 804, 1008
BseNI	ACTGG	2 cut(s)	701, 719
BseRI	GAGGAG	6 cut(s)	57, 408, 488, 576, 790, 1034
BseXI	GCAGC	1 cut(s)	578
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	797
BshNI	GGYRCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	125, 734, 941
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	3 cut(s)	39, 611, 750
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	797
Bsp143I	GATC	4 cut(s)	32, 271, 277, 684
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	4 cut(s)	193, 255, 258, 552
BspANI	GGCC	1 cut(s)	797
BspCNI	CTCAG	8 cut(s)	214, 439, 526, 532, 649, 760, 803, 1009
BspDI	ATCGAT	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	181, 855
BspPI	GGATC	2 cut(s)	40, 679
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	701, 719
BssECI	CCNNGG	4 cut(s)	175, 232, 547, 1041
BssMI	GATC	4 cut(s)	32, 271, 277, 684
BssT1I	CCWWGG	3 cut(s)	175, 547, 1041
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	744, 974
Bst6I	CTCTTC	3 cut(s)	71, 227, 384
BstC8I	GCNNGC	2 cut(s)	585, 919
BstDEI	CTNAG	8 cut(s)	201, 447, 519, 534, 657, 747, 790, 1017
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	4 cut(s)	189, 652, 667, 1052
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	4 cut(s)	35, 274, 280, 687
BstMAI	GTCTC	3 cut(s)	39, 611, 750
BstMBI	GATC	4 cut(s)	32, 271, 277, 684
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 563
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
Bsu15I	ATCGAT	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	797
BsuTUI	ATCGAT	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	4 cut(s)	189, 652, 667, 1052
Cac8I	GCNNGC	2 cut(s)	585, 919
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	736
ClaI	ATCGAT	1 cut(s)	280
CpoI	CGGWCCG	1 cut(s)	736
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	5
CspI	CGGWCCG	1 cut(s)	736
CviAII	CATG	3 cut(s)	176, 433, 453
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	8 cut(s)	201, 447, 519, 534, 657, 747, 790, 1017
DpnI	GATC	4 cut(s)	34, 273, 279, 686
DpnII	GATC	4 cut(s)	32, 271, 277, 684
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	71, 227, 384
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	3 cut(s)	71, 227, 384
EciI	GGCGGA	1 cut(s)	244
Eco130I	CCWWGG	3 cut(s)	175, 547, 1041
Eco147I	AGGCCT	1 cut(s)	797
Eco47I	GGWCC	1 cut(s)	736
Eco57I	CTGAAG	2 cut(s)	651, 951
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	3 cut(s)	175, 547, 1041
ErhI	CCWWGG	3 cut(s)	175, 547, 1041
FaeI	CATG	3 cut(s)	179, 436, 456
FaiI	YATR	5 cut(s)	177, 332, 412, 434, 454
FalI	AAGNNNNNCTT	4 cut(s)	200, 232, 480, 512
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	3 cut(s)	175, 432, 452
Fnu4HI	GCNGC	2 cut(s)	258, 567
FokI	GGATG	4 cut(s)	176, 659, 674, 1039
Fsp4HI	GCNGC	2 cut(s)	258, 567
FspBI	CTAG	3 cut(s)	92, 390, 515
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	2 cut(s)	258, 567
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	797
HapII	CCGG	3 cut(s)	125, 734, 941
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	179, 436, 456
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	1062
HpaII	CCGG	3 cut(s)	125, 734, 941
HphI	GGTGA	3 cut(s)	586, 618, 818
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	8 cut(s)	118, 360, 448, 658, 740, 750, 793, 829
Hpy188III	TCNNGA	9 cut(s)	98, 275, 390, 482, 497, 593, 878, 890, 1009
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	2 cut(s)	22, 59
HpyAV	CCTTC	3 cut(s)	162, 238, 809
HpyCH4III	ACNGT	2 cut(s)	744, 974
HpyCH4V	TGCA	3 cut(s)	779, 911, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 563
HpyF3I	CTNAG	8 cut(s)	201, 447, 519, 534, 657, 747, 790, 1017
Hsp92II	CATG	3 cut(s)	179, 436, 456
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	32, 271, 277, 684
LmnI	GCTCC	2 cut(s)	250, 563
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	1 cut(s)	920
MaeI	CTAG	3 cut(s)	92, 390, 515
MaeIII	GTNAC	2 cut(s)	691, 727
MalI	GATC	4 cut(s)	34, 273, 279, 686
MboI	GATC	4 cut(s)	32, 271, 277, 684
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	1 cut(s)	684
MluCI	AATT	8 cut(s)	107, 313, 383, 597, 668, 707, 754, 767
MlyI	GAGTC	5 cut(s)	71, 370, 458, 598, 617
MmeI	TCCRAC	2 cut(s)	763, 831
MroXI	GAANNNNTTC	2 cut(s)	767, 936
MseI	TTAA	4 cut(s)	83, 312, 710, 1066
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	1031
MspI	CCGG	3 cut(s)	125, 734, 941
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	213, 563
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	4 cut(s)	32, 271, 277, 684
NlaIII	CATG	3 cut(s)	179, 436, 456
NlaIV	GGNNCC	2 cut(s)	181, 855
PceI	AGGCCT	1 cut(s)	797
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdmI	GAANNNNTTC	2 cut(s)	767, 936
PfeI	GAWTC	5 cut(s)	119, 211, 478, 860, 884
PkrI	GCNGC	2 cut(s)	259, 568
Ple19I	CGATCG	1 cut(s)	280
PleI	GAGTC	5 cut(s)	70, 370, 457, 597, 617
PpsI	GAGTC	5 cut(s)	70, 370, 457, 597, 617
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	181, 855
PspPI	GGNCC	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	684
PvuI	CGATCG	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	1031
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	437
Rsr2I	CGGWCCG	1 cut(s)	736
RsrII	CGGWCCG	1 cut(s)	736
SaqAI	TTAA	4 cut(s)	83, 312, 710, 1066
SatI	GCNGC	2 cut(s)	258, 567
Sau3AI	GATC	4 cut(s)	32, 271, 277, 684
Sau96I	GGNCC	1 cut(s)	736
SchI	GAGTC	5 cut(s)	71, 370, 458, 598, 617
ScrFI	CCNGG	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	920
SinI	GGWCC	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	888
SmoI	CTYRAG	1 cut(s)	888
Sse9I	AATT	8 cut(s)	107, 313, 383, 597, 668, 707, 754, 767
SseBI	AGGCCT	1 cut(s)	797
SsiI	CCGC	4 cut(s)	193, 255, 258, 552
SspMI	CTAG	3 cut(s)	92, 390, 515
StuI	AGGCCT	1 cut(s)	797
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	3 cut(s)	175, 547, 1041
TaaI	ACNGT	2 cut(s)	744, 974
TaqI	TCGA	4 cut(s)	20, 99, 276, 280
TasI	AATT	8 cut(s)	107, 313, 383, 597, 668, 707, 754, 767
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	5 cut(s)	119, 211, 478, 860, 884
Tru1I	TTAA	4 cut(s)	83, 312, 710, 1066
Tru9I	TTAA	4 cut(s)	83, 312, 710, 1066
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	347, 846
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	3 cut(s)	668, 754, 767
XbaI	TCTAGA	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmnI	GAANNNNTTC	2 cut(s)	767, 936
XspI	CTAG	3 cut(s)	92, 390, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.