Rh7DG003000

DNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
295775 .. 300355
4581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG003000.1

Sequence Viewer

Length: 1230 bp
ATGGCGCGAGGGTCGAAGCAGAAAAAGGAAGAAGAAGACGAAGAAGATCCAGAGCGGAAGAGGCTGAAATCGCTGGGGTTTTCGAACAAGTTAGTATCGGAGATCCCAGCCAGGCCTCAAGCGCCTCTCCGGCCTTCAAACGCCGTCGTTAAGCACCACGGCAAAGACATTATCAAGAAATCTCAGCGCAAGAACAGGTTCCTCTTCTCCTTCCCCGGCCTCTTTGCTCCCATCGCTGGCGGTAAGATCGGCGACCTCAAGGATTTGGGCACCAAGACCCCTCTCCTCTACCTCGATTTCCCTCAGGGTCGGATCAAGTTGTTTGGCACCATTGTGTTTCCCAAGAACAAGTACTTGACTCTTCAGTTTCCTAGAGGTGGAAAGAGTGTCATGTGTGAGGACTACTTTGATAATATGATCGTATTTTCTGATGCTTGGTGGATTGGGACAAAGGACGAGAACCCAGATGAAACCCAACTTGATTTCCCTAAAGAACTGAATGAGGGACACAACACAGATTTTGACTTTAAAGGTGGTGCAGGTTCAGCCTCTGTGGTTAACAACCAAAGTGATTATAAAAATGAAATTACATATGTCGACGAACATTCTCCAGATGCTAAGCTTGAACATAATTTATCTGATGATGGAAACAAAGATTTGATTGAAGTAACACCAGTTCGTCATTCAGCAAGAACTGCTGGAAAACGATTCAATTTTGGAGAAGCTTCTTCTGGAGATGATTCTGTTGAAAGCAATACTGACTTATGTGAAGGAGAAGATAACCAAATTGAGGGACTCGATTCATTATCCAGGAAGCATGCTAGTGGAAATATCCTTTTCTTTTCTACTGAAAATCTCAGCATTGGAGATTTAAACATTGTTAATGAGGATGCTGTGAAAGGAGCTCAAATTCCTGAACAAAATCAGGAGTCCTCTATGTCAGAGGCTAAATCAAAGAAACAATCTCATTCTGCCTTTTCAGTGACTACATCTAAGGAGGACTCTCGTAGTAATCATGGTCCACTAGTTCAGGCTACCATATCTACCTTATTCAAGAAAGTGGAGAAGAAGAAAGCGGGATCCAGTTTGCCAAGTCAAGTTCAAACTCCTTCTCAGGCTCATAAAACACCAAGAAATCCAAGGAAACCAGCATCTCCAAAAGTTTCTGGCCAGAAGTCGCTGCAAGCTCCTTCAAAGAGGAAGTTTAATCAGGTTAATGTTAATTTTTAG

Protein Analysis

409

Amino Acids

45.29

Weight (kDa)

8.53

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 530
AccB1I GGYRCC 2 cut(s) 269, 326
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 597
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 55, 240, 1076
AclWI GGATC 5 cut(s) 41, 97, 320, 1074, 1087
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 1 cut(s) 909
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 236, 377, 790
AgsI TTSAA 8 cut(s) 138, 626, 665, 712, 749, 1054, 1103, 1194
AhlI ACTAGT 1 cut(s) 1024
AjnI CCWGG 2 cut(s) 110, 809
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 4 cut(s) 622, 725, 905, 1187
AluI AGCT 4 cut(s) 622, 725, 905, 1187
Alw21I GWGCWC 1 cut(s) 907
AlwI GGATC 5 cut(s) 41, 97, 320, 1074, 1087
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 4 cut(s) 113, 131, 217, 1168
ApeKI GCWGC 1 cut(s) 1180
ApoI RAATTY 1 cut(s) 909
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 3 cut(s) 7, 124, 189
AspS9I GGNCC 1 cut(s) 1019
AsuC2I CCSGG 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 1019
AxyI CCTNAGG 1 cut(s) 303
BaeGI GKGCMC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 1170
BamHI GGATCC 1 cut(s) 1079
BanI GGYRCC 2 cut(s) 269, 326
BanII GRGCYC 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 907
BbvI GCAGC 1 cut(s) 1167
BccI CCATC 2 cut(s) 239, 638
BceAI ACGGC 2 cut(s) 128, 175
BciT130I CCWGG 2 cut(s) 112, 811
BcnI CCSGG 1 cut(s) 216
BcuI ACTAGT 1 cut(s) 1024
BfaI CTAG 3 cut(s) 372, 822, 1025
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 530
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 1181
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 1182
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 3 cut(s) 112, 216, 811
Bme18I GGWCC 1 cut(s) 1019
BmgT120I GGNCC 1 cut(s) 1019
BmiI GGNNCC 4 cut(s) 200, 271, 328, 1081
BmrFI CCNGG 3 cut(s) 112, 216, 811
BmsI GCATC 4 cut(s) 421, 604, 880, 1160
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 2 cut(s) 594, 753
Bpu1102I GCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 102, 242
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 157, 214, 1139
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 377, 790
Bse1I ACTGG 2 cut(s) 674, 1083
Bse21I CCTNAGG 1 cut(s) 303
BseBI CCWGG 2 cut(s) 112, 811
BseDI CCNNGG 3 cut(s) 157, 214, 1139
BseGI GGATG 1 cut(s) 895
BseLI CCNNNNNNNGG 3 cut(s) 236, 377, 790
BseMII CTCAG 4 cut(s) 197, 317, 871, 1127
BseNI ACTGG 2 cut(s) 674, 1083
BseRI GAGGAG 1 cut(s) 275
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 1167
BseYI CCCAGC 2 cut(s) 73, 106
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 4 cut(s) 115, 133, 219, 1170
BshNI GGYRCC 2 cut(s) 269, 326
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 2 cut(s) 130, 216
BslFI GGGAC 3 cut(s) 460, 519, 807
BslI CCNNNNNNNGG 3 cut(s) 236, 377, 790
BsmFI GGGAC 3 cut(s) 460, 519, 807
BsnI GGCC 4 cut(s) 115, 133, 219, 1170
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 272, 907
Bsp143I GATC 6 cut(s) 46, 102, 246, 312, 417, 1079
Bsp1720I GCTNAGC 1 cut(s) 618
BspACI CCGC 3 cut(s) 55, 240, 1076
BspANI GGCC 4 cut(s) 115, 133, 219, 1170
BspCNI CTCAG 4 cut(s) 196, 316, 870, 1126
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 200, 271, 328, 1081
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 5 cut(s) 41, 97, 320, 1074, 1087
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 269, 326
BsrBI CCGCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 674, 1083
BssECI CCNNGG 3 cut(s) 157, 214, 1139
BssMI GATC 6 cut(s) 46, 102, 246, 312, 417, 1079
BssT1I CCWWGG 1 cut(s) 1139
Bst2UI CCWGG 2 cut(s) 112, 811
Bst6I CTCTTC 3 cut(s) 53, 209, 366
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 238, 819, 1185
BstDEI CTNAG 6 cut(s) 183, 303, 618, 857, 993, 1113
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 895
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 3 cut(s) 7, 124, 189
BstKTI GATC 6 cut(s) 49, 105, 249, 315, 420, 1082
BstMBI GATC 6 cut(s) 46, 102, 246, 312, 417, 1079
BstMWI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
BstNI CCWGG 2 cut(s) 112, 811
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 110, 214, 809
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 1167
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 3 cut(s) 46, 102, 1079
BstYI RGATCY 3 cut(s) 46, 102, 1079
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 4 cut(s) 115, 133, 219, 1170
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 895
BtsIMutI CAGTG 1 cut(s) 987
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 3 cut(s) 238, 819, 1185
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 3 cut(s) 7, 124, 189
Cfr13I GGNCC 1 cut(s) 1019
Csp6I GTAC 1 cut(s) 352
CviAII CATG 3 cut(s) 391, 818, 1016
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 6 cut(s) 183, 303, 618, 857, 993, 1113
DpnI GATC 6 cut(s) 48, 104, 248, 314, 419, 1081
DpnII GATC 6 cut(s) 46, 102, 246, 312, 417, 1079
DraI TTTAAA 2 cut(s) 529, 873
EaeI YGGCCR 1 cut(s) 1168
Eam1104I CTCTTC 3 cut(s) 53, 209, 366
EarI CTCTTC 3 cut(s) 53, 209, 366
Ecl136II GAGCTC 1 cut(s) 905
Eco130I CCWWGG 1 cut(s) 1139
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 1019
Eco53kI GAGCTC 1 cut(s) 905
Eco57I CTGAAG 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 905
EcoRII CCWGG 2 cut(s) 110, 809
EcoT14I CCWWGG 1 cut(s) 1139
EcoT38I GRGCYC 1 cut(s) 907
ErhI CCWWGG 1 cut(s) 1139
FaeI CATG 3 cut(s) 394, 821, 1019
FaqI GGGAC 3 cut(s) 460, 519, 807
FatI CATG 3 cut(s) 390, 817, 1015
FauI CCCGC 1 cut(s) 1069
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 1 cut(s) 1181
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 1 cut(s) 907
Fsp4HI GCNGC 1 cut(s) 1181
FspBI CTAG 3 cut(s) 372, 822, 1025
GlaI GCGC 3 cut(s) 6, 123, 188
GluI GCNGC 1 cut(s) 1181
GsaI CCCAGC 2 cut(s) 77, 110
GsuI CTGGAG 2 cut(s) 594, 753
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 4 cut(s) 115, 133, 219, 1170
HapII CCGG 2 cut(s) 130, 216
HhaI GCGC 3 cut(s) 7, 124, 189
Hin1II CATG 3 cut(s) 394, 821, 1019
Hin6I GCGC 3 cut(s) 5, 122, 187
HinP1I GCGC 3 cut(s) 5, 122, 187
HincII GTYRAC 2 cut(s) 559, 598
HindII GTYRAC 2 cut(s) 559, 598
HindIII AAGCTT 2 cut(s) 620, 723
HinfI GANTC 7 cut(s) 358, 708, 740, 795, 800, 929, 1001
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 2 cut(s) 130, 216
Hpy166II GTNNAC 3 cut(s) 559, 598, 1022
Hpy188I TCNGA 5 cut(s) 100, 312, 430, 640, 943
Hpy188III TCNNGA 7 cut(s) 50, 175, 611, 732, 914, 926, 1054
Hpy8I GTNNAC 3 cut(s) 559, 598, 1022
Hpy99I CGWCG 2 cut(s) 149, 602
HpyAV CCTTC 5 cut(s) 144, 220, 764, 1119, 1200
HpyCH4V TGCA 2 cut(s) 539, 1183
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
HpyF3I CTNAG 6 cut(s) 183, 303, 618, 857, 993, 1113
Hsp92II CATG 3 cut(s) 394, 821, 1019
HspAI GCGC 3 cut(s) 5, 122, 187
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 6 cut(s) 46, 102, 246, 312, 417, 1079
LmnI GCTCC 3 cut(s) 232, 902, 1192
Lsp1109I GCAGC 1 cut(s) 1167
LweI GCATC 4 cut(s) 421, 604, 880, 1160
MaeI CTAG 3 cut(s) 372, 822, 1025
MaeIII GTNAC 2 cut(s) 667, 982
MalI GATC 6 cut(s) 48, 104, 248, 314, 419, 1081
MbiI CCGCTC 1 cut(s) 55
MboI GATC 6 cut(s) 46, 102, 246, 312, 417, 1079
MflI RGATCY 3 cut(s) 46, 102, 1079
MhlI GDGCHC 2 cut(s) 272, 907
MlsI TGGCCA 1 cut(s) 1170
MluCI AATT 6 cut(s) 585, 631, 712, 786, 909, 1222
MluNI TGGCCA 1 cut(s) 1170
MlyI GAGTC 4 cut(s) 352, 789, 938, 995
MmeI TCCRAC 1 cut(s) 290
Mox20I TGGCCA 1 cut(s) 1170
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 1170
MseI TTAA 8 cut(s) 150, 528, 558, 872, 882, 1206, 1215, 1221
MslI CAYNNNNRTG 2 cut(s) 332, 822
Msp20I TGGCCA 1 cut(s) 1170
MspI CCGG 2 cut(s) 130, 216
MspR9I CCNGG 3 cut(s) 112, 216, 811
MvaI CCWGG 2 cut(s) 112, 811
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
NciI CCSGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 592
NdeII GATC 6 cut(s) 46, 102, 246, 312, 417, 1079
NlaIII CATG 3 cut(s) 394, 821, 1019
NlaIV GGNNCC 4 cut(s) 200, 271, 328, 1081
NmuCI GTSAC 1 cut(s) 982
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 332
PaeI GCATGC 1 cut(s) 821
PceI AGGCCT 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 708, 740, 800
PfoI TCCNGGA 1 cut(s) 809
PkrI GCNGC 1 cut(s) 1182
PleI GAGTC 4 cut(s) 352, 789, 937, 995
PpsI GAGTC 4 cut(s) 352, 789, 937, 995
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 907
Psp6I CCWGG 2 cut(s) 110, 809
PspFI CCCAGC 2 cut(s) 73, 106
PspGI CCWGG 2 cut(s) 110, 809
PspN4I GGNNCC 4 cut(s) 200, 271, 328, 1081
PspPI GGNCC 1 cut(s) 1019
PsrI GAACNNNNNNTAC 2 cut(s) 660, 692
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 3 cut(s) 46, 102, 1079
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 332, 822
SacI GAGCTC 1 cut(s) 907
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 8 cut(s) 150, 528, 558, 872, 882, 1206, 1215, 1221
SatI GCNGC 1 cut(s) 1181
Sau3AI GATC 6 cut(s) 46, 102, 246, 312, 417, 1079
Sau96I GGNCC 1 cut(s) 1019
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 4 cut(s) 352, 789, 938, 995
ScrFI CCNGG 3 cut(s) 112, 216, 811
SduI GDGCHC 2 cut(s) 272, 907
SfaNI GCATC 4 cut(s) 421, 604, 880, 1160
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 1 cut(s) 1019
SmiMI CAYNNNNRTG 2 cut(s) 332, 822
SmlI CTYRAG 2 cut(s) 117, 257
SmoI CTYRAG 2 cut(s) 117, 257
SpeI ACTAGT 1 cut(s) 1024
SphI GCATGC 1 cut(s) 821
Sse9I AATT 6 cut(s) 585, 631, 712, 786, 909, 1222
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 3 cut(s) 55, 240, 1076
SspMI CTAG 3 cut(s) 372, 822, 1025
SstI GAGCTC 1 cut(s) 907
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 110, 214, 809
StyI CCWWGG 1 cut(s) 1139
TaqI TCGA 5 cut(s) 14, 83, 294, 597, 798
TasI AATT 6 cut(s) 585, 631, 712, 786, 909, 1222
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 3 cut(s) 708, 740, 800
Tru1I TTAA 8 cut(s) 150, 528, 558, 872, 882, 1206, 1215, 1221
Tru9I TTAA 8 cut(s) 150, 528, 558, 872, 882, 1206, 1215, 1221
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 1 cut(s) 1180
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 3 cut(s) 483, 597, 792
TspRI CASTG 1 cut(s) 987
VpaK11BI GGWCC 1 cut(s) 1019
XapI RAATTY 1 cut(s) 909
XceI RCATGY 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 3 cut(s) 372, 822, 1025
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.