Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005819

Physical Location & Seq

Genomic Coordinates Reverse (-)

218448 .. 220835

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGCGAGGGTCGAAGCACAAAAAGGAAGAAGAAGACGAAGAAGATCCAGAGCGGAAGAGGCTGAAATCGCTGGGGTTTTCGAACAAGCTAGTATCGGAGATCCCAGCCAGGCCTCAAGCGCCTCTCCGGCCTTCAAACGCCGTCGTTAAGCACCACGGCAAAGACATTATCAAGAAATCTCAGCGCAAGAACAGGTTCCTCTTCTCCTTCCCCGGCCTCTTTGCTCCCATCGCTGGCGGTAAGATCGGCGACCTCAAGGATTTGGGCACCAAGACCCCTGTCCTCTACCTCGATTTCCCTCAGGGTCGGATCAAGTTGTTTGGCACCATTGTGTTTCCCAAGAACAAGTACTTGACTCTTCAGTTTCCTAGAGGTGGAAAGAGTGTCATGTGTGAGGACTACTTTGATAATATGATCGTATTTTCTGATGCTTGGTGGATTGGGACAAAGGACGAGAACCCAGATGAAGCCCAACTTGATTTCCCTAAAGAACTGAATGAGGGACACAACACAGATTATGACTTTAAAGGTGGTGCAGGTTCAGCATCTGTGGTTAACAACCAAAGTGATTATAAAAATGAAATTACATATGTCGACGAACATTCTCCAGATGCTAAGCTTGAACATAATTTATCTGATGATGGAAACAAAGATTTGATTGAAGTAACACCAGTTCGTCATTCAGCAAGAACAGCTGGAAAACGATTCAATTTTGGAGAAGCTTCTTCCGGAGATGATTCTATTGAAAGCAATACTGACTTATGTGAAGGAGAAGATAACCAAATTGGGGGACTCGATTCATTATCCAGGAAGCATGCTAGTGGAAATATCCTTTTCTTTTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.55

Weight (kDa)

5.81

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48380 AT1G48380
fragaria_vesca	FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410
malus_domestica	MD14G1245900.v1.1
prunus_persica	Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1
pyrus_communis	pycom14g20680
rosa_chinensis	RchiOBHm_Chr7g0177071
rosa_laevigata	RLG00000005559
rosa_multiflora	Rmu_sc0005310.1_g000026
rosa_roxburghii	Rroxscaffold_3G00276120
rosa_rugosa	Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500
rosa_samantha	Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000
rosa_wichuraiana	Rw7G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
Acc36I	ACCTGC	1 cut(s)	530
AccB1I	GGYRCC	2 cut(s)	269, 326
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	731
AciI	CCGC	2 cut(s)	55, 240
AclWI	GGATC	3 cut(s)	41, 97, 320
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	236, 377, 790
AgsI	TTSAA	5 cut(s)	138, 626, 665, 712, 749
AjnI	CCWGG	2 cut(s)	110, 809
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	4 cut(s)	91, 622, 698, 725
AluI	AGCT	4 cut(s)	91, 622, 698, 725
AlwI	GGATC	3 cut(s)	41, 97, 320
AlwNI	CAGNNNCTG	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	731
AoxI	GGCC	3 cut(s)	113, 131, 217
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	3 cut(s)	7, 124, 189
AsuC2I	CCSGG	1 cut(s)	216
AsuII	TTCGAA	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	272
BanI	GGYRCC	2 cut(s)	269, 326
BbsI	GAAGAC	1 cut(s)	42
BccI	CCATC	2 cut(s)	239, 638
BceAI	ACGGC	2 cut(s)	128, 175
BciT130I	CCWGG	2 cut(s)	112, 811
BcnI	CCSGG	1 cut(s)	216
BfaI	CTAG	3 cut(s)	92, 372, 822
BfoI	RGCGCY	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	530
BglI	GCCNNNNNGGC	1 cut(s)	130
BlpI	GCTNAGC	1 cut(s)	618
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	3 cut(s)	112, 216, 811
BmiI	GGNNCC	3 cut(s)	200, 271, 328
BmrFI	CCNGG	3 cut(s)	112, 216, 811
BmsI	GCATC	3 cut(s)	421, 557, 604
BoxI	GACNNNNGTC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	2 cut(s)	102, 242
BpuMI	CCSGG	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	157, 214
BsaWI	WCCGGW	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 377, 790
Bse1I	ACTGG	1 cut(s)	674
Bse21I	CCTNAGG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	731
BseBI	CCWGG	2 cut(s)	112, 811
BseDI	CCNNGG	2 cut(s)	157, 214
BseLI	CCNNNNNNNGG	3 cut(s)	236, 377, 790
BseMII	CTCAG	2 cut(s)	197, 317
BseNI	ACTGG	1 cut(s)	674
BseSI	GKGCMC	1 cut(s)	272
BseYI	CCCAGC	2 cut(s)	73, 106
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	3 cut(s)	115, 133, 219
BshNI	GGYRCC	2 cut(s)	269, 326
BsiSI	CCGG	3 cut(s)	130, 216, 732
BslFI	GGGAC	3 cut(s)	460, 519, 807
BslI	CCNNNNNNNGG	3 cut(s)	236, 377, 790
BsmFI	GGGAC	3 cut(s)	460, 519, 807
BsnI	GGCC	3 cut(s)	115, 133, 219
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp13I	TCCGGA	1 cut(s)	731
Bsp143I	GATC	5 cut(s)	46, 102, 246, 312, 417
Bsp1720I	GCTNAGC	1 cut(s)	618
BspACI	CCGC	2 cut(s)	55, 240
BspANI	GGCC	3 cut(s)	115, 133, 219
BspCNI	CTCAG	2 cut(s)	196, 316
BspEI	TCCGGA	1 cut(s)	731
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	200, 271, 328
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	3 cut(s)	41, 97, 320
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	269, 326
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	2 cut(s)	157, 214
BssMI	GATC	5 cut(s)	46, 102, 246, 312, 417
Bst2UI	CCWGG	2 cut(s)	112, 811
Bst6I	CTCTTC	3 cut(s)	53, 209, 366
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	238, 819
BstDEI	CTNAG	3 cut(s)	183, 303, 618
BstDSI	CCRYGG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	3 cut(s)	7, 124, 189
BstKTI	GATC	5 cut(s)	49, 105, 249, 315, 420
BstMBI	GATC	5 cut(s)	46, 102, 246, 312, 417
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 70, 121, 130, 233, 545, 695
BstNI	CCWGG	2 cut(s)	112, 811
BstNSI	RCATGY	1 cut(s)	821
BstPAI	GACNNNNGTC	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	110, 214, 809
BstSLI	GKGCMC	1 cut(s)	272
BstUI	CGCG	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	46, 102
BstYI	RGATCY	2 cut(s)	46, 102
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	115, 133, 219
BtgI	CCRYGG	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	238, 819
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	3 cut(s)	7, 124, 189
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	391, 818
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	183, 303, 618
DpnI	GATC	5 cut(s)	48, 104, 248, 314, 419
DpnII	GATC	5 cut(s)	46, 102, 246, 312, 417
DraI	TTTAAA	1 cut(s)	529
Eam1104I	CTCTTC	3 cut(s)	53, 209, 366
EarI	CTCTTC	3 cut(s)	53, 209, 366
Eco147I	AGGCCT	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	110, 809
FaeI	CATG	2 cut(s)	394, 821
FaiI	YATR	9 cut(s)	392, 416, 522, 576, 592, 594, 630, 766, 819
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	3 cut(s)	460, 519, 807
FatI	CATG	2 cut(s)	390, 817
FauNDI	CATATG	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	597
FspBI	CTAG	3 cut(s)	92, 372, 822
GlaI	GCGC	3 cut(s)	6, 123, 188
GsaI	CCCAGC	2 cut(s)	77, 110
GsuI	CTGGAG	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	115, 133, 219
HapII	CCGG	3 cut(s)	130, 216, 732
HhaI	GCGC	3 cut(s)	7, 124, 189
Hin1II	CATG	2 cut(s)	394, 821
Hin6I	GCGC	3 cut(s)	5, 122, 187
HinP1I	GCGC	3 cut(s)	5, 122, 187
HincII	GTYRAC	2 cut(s)	559, 598
HindII	GTYRAC	2 cut(s)	559, 598
HindIII	AAGCTT	2 cut(s)	620, 723
HinfI	GANTC	5 cut(s)	358, 708, 740, 795, 800
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	3 cut(s)	130, 216, 732
Hpy166II	GTNNAC	2 cut(s)	559, 598
Hpy188I	TCNGA	4 cut(s)	100, 312, 430, 640
Hpy188III	TCNNGA	4 cut(s)	50, 175, 611, 732
Hpy8I	GTNNAC	2 cut(s)	559, 598
Hpy99I	CGWCG	2 cut(s)	149, 602
HpyAV	CCTTC	3 cut(s)	144, 220, 764
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 70, 121, 130, 233, 545, 695
HpyF3I	CTNAG	3 cut(s)	183, 303, 618
Hsp92II	CATG	2 cut(s)	394, 821
HspAI	GCGC	3 cut(s)	5, 122, 187
Kpn2I	TCCGGA	1 cut(s)	731
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	46, 102, 246, 312, 417
LmnI	GCTCC	1 cut(s)	232
LweI	GCATC	3 cut(s)	421, 557, 604
MaeI	CTAG	3 cut(s)	92, 372, 822
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	5 cut(s)	48, 104, 248, 314, 419
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	46, 102, 246, 312, 417
MflI	RGATCY	2 cut(s)	46, 102
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	4 cut(s)	585, 631, 712, 786
MlyI	GAGTC	2 cut(s)	352, 789
MmeI	TCCRAC	1 cut(s)	290
MroI	TCCGGA	1 cut(s)	731
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	3 cut(s)	150, 528, 558
MslI	CAYNNNNRTG	2 cut(s)	332, 822
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	3 cut(s)	130, 216, 732
MspR9I	CCNGG	3 cut(s)	112, 216, 811
MvaI	CCWGG	2 cut(s)	112, 811
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	7 cut(s)	61, 70, 121, 130, 233, 545, 695
NciI	CCSGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	5 cut(s)	46, 102, 246, 312, 417
NlaIII	CATG	2 cut(s)	394, 821
NlaIV	GGNNCC	3 cut(s)	200, 271, 328
NspI	RCATGY	1 cut(s)	821
NspV	TTCGAA	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	821
PceI	AGGCCT	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	708, 740, 800
PfoI	TCCNGGA	1 cut(s)	809
PleI	GAGTC	2 cut(s)	352, 789
PpsI	GAGTC	2 cut(s)	352, 789
PshAI	GACNNNNGTC	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	576
Psp6I	CCWGG	2 cut(s)	110, 809
PspFI	CCCAGC	2 cut(s)	73, 106
PspGI	CCWGG	2 cut(s)	110, 809
PspN4I	GGNNCC	3 cut(s)	200, 271, 328
PsrI	GAACNNNNNNTAC	2 cut(s)	660, 692
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	46, 102
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	332, 822
SalI	GTCGAC	1 cut(s)	596
SaqAI	TTAA	3 cut(s)	150, 528, 558
Sau3AI	GATC	5 cut(s)	46, 102, 246, 312, 417
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	2 cut(s)	352, 789
ScrFI	CCNGG	3 cut(s)	112, 216, 811
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	3 cut(s)	421, 557, 604
SfuI	TTCGAA	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	332, 822
SmlI	CTYRAG	2 cut(s)	117, 257
SmoI	CTYRAG	2 cut(s)	117, 257
SphI	GCATGC	1 cut(s)	821
Sse9I	AATT	4 cut(s)	585, 631, 712, 786
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	55, 240
SspMI	CTAG	3 cut(s)	92, 372, 822
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	3 cut(s)	110, 214, 809
TaqI	TCGA	5 cut(s)	14, 83, 294, 597, 798
TasI	AATT	4 cut(s)	585, 631, 712, 786
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	3 cut(s)	708, 740, 800
Tru1I	TTAA	3 cut(s)	150, 528, 558
Tru9I	TTAA	3 cut(s)	150, 528, 558
TspDTI	ATGAA	3 cut(s)	483, 597, 792
XceI	RCATGY	1 cut(s)	821
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	3 cut(s)	92, 372, 822
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.