RLG00000005559

DNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
68533975 .. 68538427
4453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005559

Sequence Viewer

Length: 1359 bp
ATGGCGCGAGGGTCGAAGCACAAAAAGGAAGAAGAAGACGAAGAAGATCCAGAGCGGAAGAGGCTGAAATCGCTGGGGTTTTCGAACAAGCTAGTATCGGAGATCCCAGCCAGGCCTCAAGCGCCTCTCCGGCCTTCAAACGCCGTCGTTAAGCACCACGGCAAAGACATTATCAAGAAATCTCAGCGCAAGAACAGGTTCCTTTTCTCCTTCCCCGGCCTCTTTGCTCCCATCGCAGGCGGTAAGATCGGCGACCTCAAGGATTTGGGCACCAAGAGCCCTGTCCTCTACCTCGATTTCCCTCAGGGTCGGATCAAGTTGTTTGGGACCATTGTGTTCCCCAAGAACAAGTATTTGACTCTTCAGTTTCCTAGAGGTGGAAAGAGTGTCATGTGTGAGGACTACTTTGATAATATGATTGTATTTTCTGATGCTTGGTGGATTGGGACAAAGGACAAGAACCCAGATGAAACCCAACTTGATTTCCCTAAAGAACTGAATGAGGGACACAACACAGATTATGACTTTAAAGGTGGTGCAGGTTCAGCATCTGTGGTTAACAACCAAAGTGATTATAAAAATGAAATTACATATGTAGACGAACATTCTCCAGATGCTAAGCTTGAACATAATTTATCTGATGATGGAAACAAAGATTTGATTGAAGTAACACCAGTTCGTCATTCAGCAAGAACTGCTGGAAAACGATTCAATTTTGGAGAAGCTTCTTCTGGAGATGATTCTGTTGAAAGCAATACTGACTTATGTGAAGGAGAAGATAACCAAATTTGGGGACTCGATTCATTATCCAGGAAGCATGCTAGTGGAAAGACTGAAAATCTCAGCATTGGAGATTTAATCATTGTTAATGAGAATACTGTTGTGAAAGGAGCTCAAATTCCTGAACAAAATCAGGAGTCCTCTATGTCAGAGGCTAAATCAAAGAAACAATCTCATTCTGCCTTTTCAGCGACTATATCTAAGGAGGACTCTCGTAGTAATCATGGTCCTCTAGTTCAGGCTACTATATCTACCTTATTCAAGAAAGTGGAGAAGAAGAAAGAGGGATCCAGTTTGCCAAGTCAAGTTCAAACTCCTTCTCAGGCTCATAAAACACCAAGAAATCCAAGGAAACCAGCATCTCCAAAAGTTTCTGGCCAGAAGTCACTGCAAGCTCCTTCAAAGAGGAAGTTTAATCAGGATGGAGGACCTAGTAAAAAGGGCAAAAGTATCAAGGAAAACGATGCTGTGGGCAAAAGGTTGGCAAAGAAGAAAGAATATCAGGTTGAAGATGATATTGAAGAATTCTCAAGCAGCTCACAGGATACTGATTGTAGTGATGAAGAGTGGGCTGCTTGA

Protein Analysis

453

Amino Acids

50.07

Weight (kDa)

8.13

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 597
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 55, 240
AclWI GGATC 5 cut(s) 41, 97, 320, 1062, 1075
AcoI YGGCCR 1 cut(s) 1156
AcsI RAATTY 3 cut(s) 786, 897, 1304
AcuI CTGAAG 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 236, 377, 790
AjnI CCWGG 2 cut(s) 110, 809
AluBI AGCT 6 cut(s) 91, 622, 725, 893, 1175, 1317
AluI AGCT 6 cut(s) 91, 622, 725, 893, 1175, 1317
Alw21I GWGCWC 1 cut(s) 895
AlwI GGATC 5 cut(s) 41, 97, 320, 1062, 1075
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 4 cut(s) 113, 131, 217, 1156
ApeKI GCWGC 2 cut(s) 1314, 1352
ApoI RAATTY 3 cut(s) 786, 897, 1304
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 3 cut(s) 7, 124, 189
AspS9I GGNCC 3 cut(s) 327, 1007, 1208
AsuC2I CCSGG 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 3 cut(s) 327, 1007, 1208
AxyI CCTNAGG 1 cut(s) 303
BaeGI GKGCMC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 1158
BamHI GGATCC 1 cut(s) 1067
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 2 cut(s) 281, 895
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 895
BbvI GCAGC 2 cut(s) 1326, 1339
BccI CCATC 3 cut(s) 239, 638, 1196
BceAI ACGGC 2 cut(s) 128, 175
BciT130I CCWGG 2 cut(s) 112, 811
BciVI GTATCC 1 cut(s) 1318
BcnI CCSGG 1 cut(s) 216
BfaI CTAG 5 cut(s) 92, 372, 822, 1013, 1212
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 530
BfuI GTATCC 1 cut(s) 1318
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 2 cut(s) 1315, 1353
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 2 cut(s) 1316, 1354
Bme1390I CCNGG 3 cut(s) 112, 216, 811
Bme18I GGWCC 3 cut(s) 327, 1007, 1208
BmgT120I GGNCC 3 cut(s) 327, 1007, 1208
BmiI GGNNCC 4 cut(s) 200, 271, 328, 1069
BmrFI CCNGG 3 cut(s) 112, 216, 811
BmsI GCATC 5 cut(s) 421, 557, 604, 1148, 1234
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 2 cut(s) 594, 753
Bpu1102I GCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 3 cut(s) 102, 242, 1294
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 157, 214, 1127
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 377, 790
Bse1I ACTGG 2 cut(s) 674, 1071
Bse21I CCTNAGG 1 cut(s) 303
BseBI CCWGG 2 cut(s) 112, 811
BseDI CCNNGG 3 cut(s) 157, 214, 1127
BseGI GGATG 1 cut(s) 1207
BseLI CCNNNNNNNGG 3 cut(s) 236, 377, 790
BseMII CTCAG 4 cut(s) 197, 317, 856, 1115
BseNI ACTGG 2 cut(s) 674, 1071
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 2 cut(s) 1326, 1339
BseYI CCCAGC 2 cut(s) 73, 106
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 4 cut(s) 115, 133, 219, 1158
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 895
BsiSI CCGG 2 cut(s) 130, 216
BslFI GGGAC 4 cut(s) 340, 460, 519, 807
BslI CCNNNNNNNGG 3 cut(s) 236, 377, 790
BsmFI GGGAC 4 cut(s) 340, 460, 519, 807
BsnI GGCC 4 cut(s) 115, 133, 219, 1158
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 3 cut(s) 272, 281, 895
Bsp143I GATC 5 cut(s) 46, 102, 246, 312, 1067
Bsp1720I GCTNAGC 1 cut(s) 618
BspACI CCGC 2 cut(s) 55, 240
BspANI GGCC 4 cut(s) 115, 133, 219, 1158
BspCNI CTCAG 4 cut(s) 196, 316, 855, 1114
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 200, 271, 328, 1069
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 5 cut(s) 41, 97, 320, 1062, 1075
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 674, 1071
BssECI CCNNGG 3 cut(s) 157, 214, 1127
BssMI GATC 5 cut(s) 46, 102, 246, 312, 1067
BssT1I CCWWGG 1 cut(s) 1127
Bst2UI CCWGG 2 cut(s) 112, 811
Bst4CI ACNGT 1 cut(s) 880
Bst6I CTCTTC 3 cut(s) 53, 366, 1338
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 238, 819, 1173
BstDEI CTNAG 6 cut(s) 183, 303, 618, 842, 981, 1101
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 1207
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 3 cut(s) 7, 124, 189
BstKTI GATC 5 cut(s) 49, 105, 249, 315, 1070
BstMBI GATC 5 cut(s) 46, 102, 246, 312, 1067
BstMWI GCNNNNNNNGC 9 cut(s) 61, 70, 121, 130, 233, 276, 545, 695, 968
BstNI CCWGG 2 cut(s) 112, 811
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 110, 214, 809
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 1326, 1339
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 3 cut(s) 46, 102, 1067
BstYI RGATCY 3 cut(s) 46, 102, 1067
Bsu36I CCTNAGG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 1318
BsuRI GGCC 4 cut(s) 115, 133, 219, 1158
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 1207
BtsI GCAGTG 1 cut(s) 1166
BtsIMutI CAGTG 1 cut(s) 1166
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 3 cut(s) 238, 819, 1173
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 3 cut(s) 7, 124, 189
Cfr13I GGNCC 3 cut(s) 327, 1007, 1208
CviAII CATG 3 cut(s) 391, 818, 1004
DdeI CTNAG 6 cut(s) 183, 303, 618, 842, 981, 1101
DpnI GATC 5 cut(s) 48, 104, 248, 314, 1069
DpnII GATC 5 cut(s) 46, 102, 246, 312, 1067
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 1156
Eam1104I CTCTTC 3 cut(s) 53, 366, 1338
EarI CTCTTC 3 cut(s) 53, 366, 1338
Ecl136II GAGCTC 1 cut(s) 893
Eco130I CCWWGG 1 cut(s) 1127
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 2 cut(s) 281, 895
Eco47I GGWCC 3 cut(s) 327, 1007, 1208
Eco53kI GAGCTC 1 cut(s) 893
Eco57I CTGAAG 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 893
EcoO109I RGGNCCY 1 cut(s) 1208
EcoRI GAATTC 1 cut(s) 1304
EcoRII CCWGG 2 cut(s) 110, 809
EcoT14I CCWWGG 1 cut(s) 1127
EcoT38I GRGCYC 2 cut(s) 281, 895
ErhI CCWWGG 1 cut(s) 1127
FaeI CATG 3 cut(s) 394, 821, 1007
FaqI GGGAC 4 cut(s) 340, 460, 519, 807
FatI CATG 3 cut(s) 390, 817, 1003
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 1315, 1353
FokI GGATG 1 cut(s) 1214
FriOI GRGCYC 2 cut(s) 281, 895
Fsp4HI GCNGC 2 cut(s) 1315, 1353
FspBI CTAG 5 cut(s) 92, 372, 822, 1013, 1212
GlaI GCGC 3 cut(s) 6, 123, 188
GluI GCNGC 2 cut(s) 1315, 1353
GsaI CCCAGC 2 cut(s) 77, 110
GsuI CTGGAG 2 cut(s) 594, 753
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 4 cut(s) 115, 133, 219, 1158
HapII CCGG 2 cut(s) 130, 216
HhaI GCGC 3 cut(s) 7, 124, 189
Hin1II CATG 3 cut(s) 394, 821, 1007
Hin6I GCGC 3 cut(s) 5, 122, 187
HinP1I GCGC 3 cut(s) 5, 122, 187
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 2 cut(s) 620, 723
HinfI GANTC 7 cut(s) 358, 708, 740, 795, 800, 917, 989
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 2 cut(s) 130, 216
Hpy166II GTNNAC 2 cut(s) 559, 598
Hpy188I TCNGA 5 cut(s) 100, 312, 430, 640, 931
Hpy188III TCNNGA 8 cut(s) 50, 175, 611, 732, 902, 914, 1042, 1199
Hpy8I GTNNAC 2 cut(s) 559, 598
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 5 cut(s) 144, 220, 764, 1107, 1188
HpyCH4III ACNGT 1 cut(s) 880
HpyCH4V TGCA 2 cut(s) 539, 1171
HpyF10VI GCNNNNNNNGC 9 cut(s) 61, 70, 121, 130, 233, 276, 545, 695, 968
HpyF3I CTNAG 6 cut(s) 183, 303, 618, 842, 981, 1101
Hsp92II CATG 3 cut(s) 394, 821, 1007
HspAI GCGC 3 cut(s) 5, 122, 187
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 5 cut(s) 46, 102, 246, 312, 1067
LmnI GCTCC 3 cut(s) 232, 890, 1180
Lsp1109I GCAGC 2 cut(s) 1326, 1339
LweI GCATC 5 cut(s) 421, 557, 604, 1148, 1234
MaeI CTAG 5 cut(s) 92, 372, 822, 1013, 1212
MaeIII GTNAC 2 cut(s) 667, 1164
MalI GATC 5 cut(s) 48, 104, 248, 314, 1069
MbiI CCGCTC 1 cut(s) 55
MboI GATC 5 cut(s) 46, 102, 246, 312, 1067
MflI RGATCY 3 cut(s) 46, 102, 1067
MhlI GDGCHC 3 cut(s) 272, 281, 895
MlsI TGGCCA 1 cut(s) 1158
MluCI AATT 6 cut(s) 585, 631, 712, 786, 897, 1304
MluNI TGGCCA 1 cut(s) 1158
MlyI GAGTC 4 cut(s) 352, 789, 926, 983
MmeI TCCRAC 1 cut(s) 290
Mox20I TGGCCA 1 cut(s) 1158
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 1158
MseI TTAA 6 cut(s) 150, 528, 558, 857, 867, 1194
MslI CAYNNNNRTG 1 cut(s) 822
Msp20I TGGCCA 1 cut(s) 1158
MspI CCGG 2 cut(s) 130, 216
MspR9I CCNGG 3 cut(s) 112, 216, 811
MvaI CCWGG 2 cut(s) 112, 811
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 9 cut(s) 61, 70, 121, 130, 233, 276, 545, 695, 968
NciI CCSGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 592
NdeII GATC 5 cut(s) 46, 102, 246, 312, 1067
NlaIII CATG 3 cut(s) 394, 821, 1007
NlaIV GGNNCC 4 cut(s) 200, 271, 328, 1069
NmuCI GTSAC 1 cut(s) 1164
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 83
PaeI GCATGC 1 cut(s) 821
PceI AGGCCT 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 708, 740, 800
PfoI TCCNGGA 1 cut(s) 809
PkrI GCNGC 2 cut(s) 1316, 1354
PleI GAGTC 4 cut(s) 352, 789, 925, 983
PpsI GAGTC 4 cut(s) 352, 789, 925, 983
PpuMI RGGWCCY 1 cut(s) 1208
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 895
Psp5II RGGWCCY 1 cut(s) 1208
Psp6I CCWGG 2 cut(s) 110, 809
PspFI CCCAGC 2 cut(s) 73, 106
PspGI CCWGG 2 cut(s) 110, 809
PspN4I GGNNCC 4 cut(s) 200, 271, 328, 1069
PspPI GGNCC 3 cut(s) 327, 1007, 1208
PspPPI RGGWCCY 1 cut(s) 1208
PsrI GAACNNNNNNTAC 2 cut(s) 660, 692
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 3 cut(s) 46, 102, 1067
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 1 cut(s) 895
SaqAI TTAA 6 cut(s) 150, 528, 558, 857, 867, 1194
SatI GCNGC 2 cut(s) 1315, 1353
Sau3AI GATC 5 cut(s) 46, 102, 246, 312, 1067
Sau96I GGNCC 3 cut(s) 327, 1007, 1208
SchI GAGTC 4 cut(s) 352, 789, 926, 983
ScrFI CCNGG 3 cut(s) 112, 216, 811
SduI GDGCHC 3 cut(s) 272, 281, 895
SfaNI GCATC 5 cut(s) 421, 557, 604, 1148, 1234
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 3 cut(s) 327, 1007, 1208
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 3 cut(s) 117, 257, 1309
SmoI CTYRAG 3 cut(s) 117, 257, 1309
SphI GCATGC 1 cut(s) 821
Sse9I AATT 6 cut(s) 585, 631, 712, 786, 897, 1304
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 2 cut(s) 55, 240
SspMI CTAG 5 cut(s) 92, 372, 822, 1013, 1212
SstI GAGCTC 1 cut(s) 895
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 110, 214, 809
StyI CCWWGG 1 cut(s) 1127
TaaI ACNGT 1 cut(s) 880
TaqI TCGA 4 cut(s) 14, 83, 294, 798
TasI AATT 6 cut(s) 585, 631, 712, 786, 897, 1304
TfiI GAWTC 3 cut(s) 708, 740, 800
Tru1I TTAA 6 cut(s) 150, 528, 558, 857, 867, 1194
Tru9I TTAA 6 cut(s) 150, 528, 558, 857, 867, 1194
TscAI CASTG 1 cut(s) 1173
TseFI GTSAC 1 cut(s) 1164
TseI GCWGC 2 cut(s) 1314, 1352
Tsp45I GTSAC 1 cut(s) 1164
TspDTI ATGAA 4 cut(s) 483, 597, 792, 1356
TspRI CASTG 1 cut(s) 1173
VpaK11BI GGWCC 3 cut(s) 327, 1007, 1208
XapI RAATTY 3 cut(s) 786, 897, 1304
XceI RCATGY 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 5 cut(s) 92, 372, 822, 1013, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.