FvH4_5g18410

DNA-binding protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
10580920 .. 10585782
4863 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18410.t2

Sequence Viewer

Length: 1347 bp
ATGGCGCGAGGCTCGTCGAAGAAGCGAAAGAACGAAGAAGAAGAAGATCCAAACTCGGAGGCGACAGAGCGGAAGAGGCTGAAAACGCTGGCCTATACGAACAAGCTAGTATCGGAGATCCCAGCTAGGCCTCAGGCGTCTCTCCGGCCTTCGAACGCCGTCGTCAAGAACCACGGCAAAGACATTATCAAGAAATCTCAGCGCAAGAACAGGTTCCTCTTCTCCTTCCCCGGCCTCTTCGCCCCCATCGCCGGCGGTAAGATCGGCGACCTCAAGGGTTTGGGCTCCAAGAGCCCCATTCTCTACCTTCATTTCCCTCAGGGTCGGATGAAGCTGTTTGGGAGCATTGTGTTTCCGAAGAACAAGTATTTGACTCTGCAATTTCCTAGAGGCGGAAAGAGTGTCATGTGTGAGGACTACTTTGATAATATGATTGTATTTTCTGATGCTTGGTGGATTGGGACAGAGGACGAGAACCCAGAAGAAACCCAACTCGATTTCCCTAAAGAACTGAGTGAGGGACATAACACGGATTATGACTTTAAAGGTGGTGCAGGTTCAATATCTGTTGCTAACAACCAAAATGATCATAAAAAAGAAATTTCATATGCAGAGGAACATTCTCCAGATGCTCAGCTTGAACATACTGTATCTGATGATGGAAACAAAGATTTGATTGAAGTAACACCGGTTCGTCAATCAGCAAGAACTGCTGGAAAACGATTCAACTTTGGAGAAGCTTCTTCCGGAGATGATTCTGTTGAAAGCAATGCTGACTTATGTGAAGGAGAAGATAACAAATTAGGGGGACTTGATTCATCATCCAGGAAACATGCTAATGGAAAGACTGAAAATCTCAGCGTTGGAGATTTGAACTTTGTTAATGTGGATGCTGATGCTGTGAAAGGAGCTCAAATTTCTGAACAAAATCAGGAGTCCACTGTGTCAGAGGCTAAATCAAAGAAACAATCTCATTCTGCCTTTAAGGAGGACTCTCATAGTAATCCCGGTCCTCTGGTTCAGGCTACAATATCTACGTTGTTCAAGAAAGCAGAGAAGAAGAAAGTGGGATCCAGTTTGCCAAGTCAAGTACAAACTCCCCAGGCTCATAAAACACCAAGAAATCCAAGGAAACCAGCATCTCAAGTCTCTGGAGAGAAGTCGCTACAAGCTCCTTCAAAGAGGAAGCTTAATCAGGATGGAGGACCTAGTAAAAAGGGAAAACTTGTCAAGGAAAAAGATGCTGTGGGCAAAAGGTTGGCAAAGAAGAAAGAAAATGAGGTTGAAGATGATATTGAAGAACTCTCAAGCAGCTCACAGGATACTGATGAAGATTGGGCTGCTTGA

Protein Analysis

449

Amino Acids

49.19

Weight (kDa)

7.7

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 70
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 746
AciI CCGC 3 cut(s) 70, 255, 393
AclWI GGATC 4 cut(s) 41, 112, 1065, 1078
AcsI RAATTY 2 cut(s) 600, 915
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 1092
AfiI CCNNNNNNNGG 2 cut(s) 251, 392
AgeI ACCGGT 1 cut(s) 688
AjnI CCWGG 2 cut(s) 824, 1101
AluBI AGCT 9 cut(s) 106, 125, 334, 637, 740, 911, 1172, 1189, 1314
AluI AGCT 9 cut(s) 106, 125, 334, 637, 740, 911, 1172, 1189, 1314
Alw21I GWGCWC 1 cut(s) 913
Alw26I GTCTC 2 cut(s) 144, 1153
AlwI GGATC 4 cut(s) 41, 112, 1065, 1078
Aor13HI TCCGGA 1 cut(s) 746
AoxI GGCC 4 cut(s) 90, 128, 146, 232
ApeKI GCWGC 2 cut(s) 1311, 1340
ApoI RAATTY 2 cut(s) 600, 915
AsiGI ACCGGT 1 cut(s) 688
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 2 cut(s) 7, 204
AspS9I GGNCC 2 cut(s) 1010, 1205
AsuC2I CCSGG 2 cut(s) 231, 1008
AsuII TTCGAA 1 cut(s) 152
AvaII GGWCC 2 cut(s) 1010, 1205
AxyI CCTNAGG 2 cut(s) 132, 318
BamHI GGATCC 1 cut(s) 1070
BanII GRGCYC 3 cut(s) 287, 296, 913
Bbv12I GWGCWC 1 cut(s) 913
BbvI GCAGC 2 cut(s) 1323, 1327
BccI CCATC 3 cut(s) 254, 653, 1193
BceAI ACGGC 2 cut(s) 143, 190
BciT130I CCWGG 2 cut(s) 826, 1103
BciVI GTATCC 1 cut(s) 1315
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 2 cut(s) 231, 1008
BcoDI GTCTC 2 cut(s) 144, 1153
BfaI CTAG 4 cut(s) 107, 126, 387, 1209
BfuAI ACCTGC 1 cut(s) 545
BfuI GTATCC 1 cut(s) 1315
BisI GCNGC 2 cut(s) 1312, 1341
BlpI GCTNAGC 1 cut(s) 633
BlsI GCNGC 2 cut(s) 1313, 1342
Bme1390I CCNGG 4 cut(s) 231, 826, 1008, 1103
Bme18I GGWCC 2 cut(s) 1010, 1205
BmgT120I GGNCC 2 cut(s) 1010, 1205
BmiI GGNNCC 3 cut(s) 215, 286, 1072
BmrFI CCNGG 4 cut(s) 231, 826, 1008, 1103
BmsI GCATC 6 cut(s) 436, 619, 880, 886, 1148, 1231
BpmI CTGGAG 2 cut(s) 609, 1173
Bpu1102I GCTNAGC 1 cut(s) 633
Bpu14I TTCGAA 1 cut(s) 152
BpuEI CTTGAG 3 cut(s) 257, 1128, 1291
BpuMI CCSGG 2 cut(s) 231, 1008
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 4 cut(s) 172, 229, 1101, 1127
BsaWI WCCGGW 2 cut(s) 688, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 392
Bse118I RCCGGY 2 cut(s) 251, 688
Bse1I ACTGG 1 cut(s) 1074
Bse21I CCTNAGG 2 cut(s) 132, 318
Bse3DI GCAATG 1 cut(s) 775
BseAI TCCGGA 1 cut(s) 746
BseBI CCWGG 2 cut(s) 826, 1103
BseDI CCNNGG 4 cut(s) 172, 229, 1101, 1127
BseGI GGATG 4 cut(s) 333, 821, 895, 1204
BseLI CCNNNNNNNGG 2 cut(s) 251, 392
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 6 cut(s) 146, 212, 332, 503, 647, 871
BseNI ACTGG 1 cut(s) 1074
BseXI GCAGC 2 cut(s) 1323, 1327
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 4 cut(s) 92, 130, 148, 234
BshTI ACCGGT 1 cut(s) 688
BsiHKAI GWGCWC 1 cut(s) 913
BsiSI CCGG 6 cut(s) 145, 231, 252, 689, 747, 1008
BslFI GGGAC 3 cut(s) 475, 534, 822
BslI CCNNNNNNNGG 2 cut(s) 251, 392
BsmAI GTCTC 2 cut(s) 144, 1153
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 3 cut(s) 475, 534, 822
BsnI GGCC 4 cut(s) 92, 130, 148, 234
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 3 cut(s) 287, 296, 913
Bsp13I TCCGGA 1 cut(s) 746
Bsp143I GATC 5 cut(s) 46, 117, 261, 586, 1070
Bsp1720I GCTNAGC 1 cut(s) 633
BspACI CCGC 3 cut(s) 70, 255, 393
BspANI GGCC 4 cut(s) 92, 130, 148, 234
BspCNI CTCAG 6 cut(s) 145, 211, 331, 504, 646, 870
BspEI TCCGGA 1 cut(s) 746
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 3 cut(s) 215, 286, 1072
BspMI ACCTGC 1 cut(s) 545
BspPI GGATC 4 cut(s) 41, 112, 1065, 1078
BspT104I TTCGAA 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 775
BsrFI RCCGGY 2 cut(s) 251, 688
BsrI ACTGG 1 cut(s) 1074
BssAI RCCGGY 2 cut(s) 251, 688
BssECI CCNNGG 4 cut(s) 172, 229, 1101, 1127
BssMI GATC 5 cut(s) 46, 117, 261, 586, 1070
BssNI GRCGYC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 1127
Bst2UI CCWGG 2 cut(s) 826, 1103
Bst4CI ACNGT 2 cut(s) 649, 943
Bst6I CTCTTC 3 cut(s) 68, 224, 242
BstACI GRCGYC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 90, 253
BstDEI CTNAG 6 cut(s) 132, 198, 318, 512, 633, 857
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 4 cut(s) 333, 821, 895, 1204
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 2 cut(s) 7, 204
BstKTI GATC 5 cut(s) 49, 120, 264, 589, 1073
BstMAI GTCTC 2 cut(s) 144, 1153
BstMBI GATC 5 cut(s) 46, 117, 261, 586, 1070
BstMWI GCNNNNNNNGC 5 cut(s) 76, 85, 248, 291, 710
BstNI CCWGG 2 cut(s) 826, 1103
BstNSI RCATGY 1 cut(s) 836
BstSCI CCNGG 4 cut(s) 229, 824, 1006, 1101
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 1323, 1327
BstX2I RGATCY 3 cut(s) 46, 117, 1070
BstYI RGATCY 3 cut(s) 46, 117, 1070
Bsu36I CCTNAGG 2 cut(s) 132, 318
BsuI GTATCC 1 cut(s) 1315
BsuRI GGCC 4 cut(s) 92, 130, 148, 234
BtgI CCRYGG 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 4 cut(s) 333, 821, 895, 1204
BtsIMutI CAGTG 1 cut(s) 939
BveI ACCTGC 1 cut(s) 545
Cac8I GCNNGC 2 cut(s) 90, 253
CfoI GCGC 2 cut(s) 7, 204
Cfr10I RCCGGY 2 cut(s) 251, 688
Cfr13I GGNCC 2 cut(s) 1010, 1205
CseI GACGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 1091
CspAI ACCGGT 1 cut(s) 688
CviAII CATG 2 cut(s) 406, 833
CviQI GTAC 1 cut(s) 1091
DdeI CTNAG 6 cut(s) 132, 198, 318, 512, 633, 857
DpnI GATC 5 cut(s) 48, 119, 263, 588, 1072
DpnII GATC 5 cut(s) 46, 117, 261, 586, 1070
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 3 cut(s) 68, 224, 242
EarI CTCTTC 3 cut(s) 68, 224, 242
EciI GGCGGA 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 911
Eco130I CCWWGG 1 cut(s) 1127
Eco147I AGGCCT 1 cut(s) 130
Eco24I GRGCYC 3 cut(s) 287, 296, 913
Eco47I GGWCC 2 cut(s) 1010, 1205
Eco53kI GAGCTC 1 cut(s) 911
Eco81I CCTNAGG 2 cut(s) 132, 318
EcoICRI GAGCTC 1 cut(s) 911
EcoO109I RGGNCCY 1 cut(s) 1205
EcoRII CCWGG 2 cut(s) 824, 1101
EcoT14I CCWWGG 1 cut(s) 1127
EcoT38I GRGCYC 3 cut(s) 287, 296, 913
ErhI CCWWGG 1 cut(s) 1127
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 409, 836
FaqI GGGAC 3 cut(s) 475, 534, 822
FatI CATG 2 cut(s) 405, 832
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 2 cut(s) 1312, 1341
FokI GGATG 4 cut(s) 340, 808, 902, 1211
FriOI GRGCYC 3 cut(s) 287, 296, 913
Fsp4HI GCNGC 2 cut(s) 1312, 1341
FspBI CTAG 4 cut(s) 107, 126, 387, 1209
GlaI GCGC 2 cut(s) 6, 203
GluI GCNGC 2 cut(s) 1312, 1341
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 2 cut(s) 609, 1173
HaeIII GGCC 4 cut(s) 92, 130, 148, 234
HapII CCGG 6 cut(s) 145, 231, 252, 689, 747, 1008
HgaI GACGC 1 cut(s) 126
HhaI GCGC 2 cut(s) 7, 204
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 2 cut(s) 409, 836
Hin6I GCGC 2 cut(s) 5, 202
HinP1I GCGC 2 cut(s) 5, 202
HindIII AAGCTT 2 cut(s) 738, 1187
HinfI GANTC 6 cut(s) 373, 723, 755, 815, 935, 992
HpaII CCGG 6 cut(s) 145, 231, 252, 689, 747, 1008
Hpy166II GTNNAC 1 cut(s) 939
Hpy188I TCNGA 8 cut(s) 58, 115, 327, 357, 445, 655, 922, 949
Hpy188III TCNNGA 8 cut(s) 166, 190, 626, 747, 932, 1045, 1152, 1196
Hpy8I GTNNAC 1 cut(s) 939
Hpy99I CGWCG 2 cut(s) 19, 164
HpyAV CCTTC 5 cut(s) 159, 235, 317, 779, 1185
HpyCH4III ACNGT 2 cut(s) 649, 943
HpyCH4IV ACGT 1 cut(s) 1037
HpyCH4V TGCA 3 cut(s) 379, 554, 611
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 85, 248, 291, 710
HpyF3I CTNAG 6 cut(s) 132, 198, 318, 512, 633, 857
HpySE526I ACGT 1 cut(s) 1037
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 2 cut(s) 409, 836
HspAI GCGC 2 cut(s) 5, 202
Kpn2I TCCGGA 1 cut(s) 746
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 5 cut(s) 46, 117, 261, 586, 1070
LmnI GCTCC 4 cut(s) 290, 342, 908, 1177
Lsp1109I GCAGC 2 cut(s) 1323, 1327
LweI GCATC 6 cut(s) 436, 619, 880, 886, 1148, 1231
MaeI CTAG 4 cut(s) 107, 126, 387, 1209
MaeII ACGT 1 cut(s) 1037
MaeIII GTNAC 1 cut(s) 682
MalI GATC 5 cut(s) 48, 119, 263, 588, 1072
MbiI CCGCTC 1 cut(s) 70
MboI GATC 5 cut(s) 46, 117, 261, 586, 1070
MflI RGATCY 3 cut(s) 46, 117, 1070
MhlI GDGCHC 3 cut(s) 287, 296, 913
MluCI AATT 4 cut(s) 380, 600, 800, 915
MlyI GAGTC 3 cut(s) 367, 944, 986
MmeI TCCRAC 2 cut(s) 305, 844
MreI CGCCGGCG 1 cut(s) 251
MroI TCCGGA 1 cut(s) 746
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 4 cut(s) 543, 882, 984, 1191
MslI CAYNNNNRTG 1 cut(s) 837
MspI CCGG 6 cut(s) 145, 231, 252, 689, 747, 1008
MspR9I CCNGG 4 cut(s) 231, 826, 1008, 1103
MvaI CCWGG 2 cut(s) 826, 1103
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 5 cut(s) 76, 85, 248, 291, 710
NaeI GCCGGC 1 cut(s) 253
NciI CCSGG 2 cut(s) 231, 1008
NdeI CATATG 1 cut(s) 607
NdeII GATC 5 cut(s) 46, 117, 261, 586, 1070
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 409, 836
NlaIV GGNNCC 3 cut(s) 215, 286, 1072
NspI RCATGY 1 cut(s) 836
NspV TTCGAA 1 cut(s) 152
PceI AGGCCT 1 cut(s) 130
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 3 cut(s) 723, 755, 815
PfoI TCCNGGA 1 cut(s) 824
PinAI ACCGGT 1 cut(s) 688
PkrI GCNGC 2 cut(s) 1313, 1342
PleI GAGTC 3 cut(s) 367, 943, 986
PpsI GAGTC 3 cut(s) 367, 943, 986
PpuMI RGGWCCY 1 cut(s) 1205
Psp124BI GAGCTC 1 cut(s) 913
Psp5II RGGWCCY 1 cut(s) 1205
Psp6I CCWGG 2 cut(s) 824, 1101
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 2 cut(s) 824, 1101
PspN4I GGNNCC 3 cut(s) 215, 286, 1072
PspPI GGNCC 2 cut(s) 1010, 1205
PspPPI RGGWCCY 1 cut(s) 1205
PsrI GAACNNNNNNTAC 2 cut(s) 675, 707
PsuI RGATCY 3 cut(s) 46, 117, 1070
RsaI GTAC 1 cut(s) 1092
RsaNI GTAC 1 cut(s) 1091
RseI CAYNNNNRTG 1 cut(s) 837
SacI GAGCTC 1 cut(s) 913
SaqAI TTAA 4 cut(s) 543, 882, 984, 1191
SatI GCNGC 2 cut(s) 1312, 1341
Sau3AI GATC 5 cut(s) 46, 117, 261, 586, 1070
Sau96I GGNCC 2 cut(s) 1010, 1205
SchI GAGTC 3 cut(s) 367, 944, 986
ScrFI CCNGG 4 cut(s) 231, 826, 1008, 1103
SduI GDGCHC 3 cut(s) 287, 296, 913
SfaNI GCATC 6 cut(s) 436, 619, 880, 886, 1148, 1231
SfuI TTCGAA 1 cut(s) 152
SgrAI CRCCGGYG 1 cut(s) 251
SinI GGWCC 2 cut(s) 1010, 1205
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 3 cut(s) 272, 1143, 1306
SmoI CTYRAG 3 cut(s) 272, 1143, 1306
Sse9I AATT 4 cut(s) 380, 600, 800, 915
SseBI AGGCCT 1 cut(s) 130
SsiI CCGC 3 cut(s) 70, 255, 393
SspMI CTAG 4 cut(s) 107, 126, 387, 1209
SstI GAGCTC 1 cut(s) 913
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 4 cut(s) 229, 824, 1006, 1101
StyI CCWWGG 1 cut(s) 1127
TaaI ACNGT 2 cut(s) 649, 943
TaiI ACGT 1 cut(s) 1040
TaqI TCGA 3 cut(s) 17, 152, 495
TasI AATT 4 cut(s) 380, 600, 800, 915
TatI WGTACW 1 cut(s) 1090
TfiI GAWTC 3 cut(s) 723, 755, 815
Tru1I TTAA 4 cut(s) 543, 882, 984, 1191
Tru9I TTAA 4 cut(s) 543, 882, 984, 1191
TscAI CASTG 1 cut(s) 946
TseI GCWGC 2 cut(s) 1311, 1340
TspDTI ATGAA 5 cut(s) 299, 344, 594, 807, 1344
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 946
VpaK11BI GGWCC 2 cut(s) 1010, 1205
XapI RAATTY 2 cut(s) 600, 915
XceI RCATGY 1 cut(s) 836
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 4 cut(s) 107, 126, 387, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.