Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005819

Physical Location & Seq

Genomic Coordinates Reverse (-)

216057 .. 218404

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCAGCTATTAATTTGAGCATACAGACTGAAAATCTCAGCATTGGAGATTTAAACATTGTTAATGAGGATGCTGTGGAAGGAGCTCAAATTCCTGAACAAAATCAGGAGTCTTCTATGTCAGAGGCTAAATCAAAGAAACAATCTCATTCTGCCTTTTCAGTGACTATATCTAAGGAGGACTCTCGTAGTAATCATGGTCCACTAGTTCAGGCTACTATATCTACCTTATTCAAGAAAGTGGAGAAGAAGAAAGCGGGATCCAGTTTTCCAAGTCAAGCTCAAACTCCTTCTCAGGCTCATAAAACACCAAGAAATCCAAGGAAACCAGCATCTCCAAAAGTTTCTGGCCAGAAGTCGCTGCAAGCTCCTTCAAAGAGGAAGTTTAATCAGGATGGAGGACCTAGTAAAAAGGGCAAAAGTATCAAGGAAAACGATGCTGTGGGCAAAAGGTTGGGAAAGAAGAAAGAATATGAGGTTGAAGATGATATTGAAGAATTCTCAAGTAGCTCACAGGATACTGATTGTAGTGATGAAGAGTGGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

19.88

Weight (kDa)

8.53

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48380 AT1G48380
fragaria_vesca	FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410
malus_domestica	MD14G1245900.v1.1
prunus_persica	Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1
pyrus_communis	pycom14g20680
rosa_chinensis	RchiOBHm_Chr7g0177071
rosa_laevigata	RLG00000005559
rosa_multiflora	Rmu_sc0005310.1_g000026
rosa_roxburghii	Rroxscaffold_3G00276120
rosa_rugosa	Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500
rosa_samantha	Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000
rosa_wichuraiana	Rw7G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	2 cut(s)	255, 268
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	90, 497
AgsI	TTSAA	4 cut(s)	235, 375, 482, 494
AhlI	ACTAGT	1 cut(s)	205
AluBI	AGCT	5 cut(s)	8, 86, 281, 368, 510
AluI	AGCT	5 cut(s)	8, 86, 281, 368, 510
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	255, 268
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	5, 361, 545
ApoI	RAATTY	2 cut(s)	90, 497
AseI	ATTAAT	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	200, 401
AvaII	GGWCC	2 cut(s)	200, 401
BalI	TGGCCA	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	3 cut(s)	17, 348, 532
BccI	CCATC	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	511
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	2 cut(s)	206, 405
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	3 cut(s)	6, 362, 546
BlsI	GCNGC	3 cut(s)	7, 363, 547
Bme18I	GGWCC	2 cut(s)	200, 401
BmgT120I	GGNCC	2 cut(s)	200, 401
BmiI	GGNNCC	1 cut(s)	262
BmsI	GCATC	3 cut(s)	61, 341, 427
BpiI	GAAGAC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	487
BsaJI	CCNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	2 cut(s)	76, 400
BseMII	CTCAG	2 cut(s)	52, 308
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	17, 348, 532
BshFI	GGCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	2 cut(s)	51, 307
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	255, 268
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	3 cut(s)	38, 174, 294
BstF5I	GGATG	2 cut(s)	76, 400
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	17, 348, 532
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	76, 400
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	200, 401
CviAII	CATG	1 cut(s)	197
DdeI	CTNAG	3 cut(s)	38, 174, 294
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DraI	TTTAAA	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	200, 401
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	200
FaiI	YATR	7 cut(s)	23, 119, 170, 198, 221, 303, 474
FatI	CATG	1 cut(s)	196
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	6, 362, 546
FokI	GGATG	2 cut(s)	83, 407
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	6, 362, 546
FspBI	CTAG	2 cut(s)	206, 405
GluI	GCNGC	3 cut(s)	6, 362, 546
HaeIII	GGCC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	200
HinfI	GANTC	2 cut(s)	110, 182
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	95, 107, 235, 392
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	74, 300, 381
HpyCH4V	TGCA	1 cut(s)	364
HpyF3I	CTNAG	3 cut(s)	38, 174, 294
Hsp92II	CATG	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	83, 373
Lsp1109I	GCAGC	3 cut(s)	17, 348, 532
LweI	GCATC	3 cut(s)	61, 341, 427
MaeI	CTAG	2 cut(s)	206, 405
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	7 cut(s)	105, 259, 262, 475, 494, 506, 548
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	88
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	3 cut(s)	13, 90, 497
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	119, 176
MnlI	CCTC	6 cut(s)	61, 118, 172, 372, 392, 469
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	4 cut(s)	12, 53, 63, 387
Msp20I	TGGCCA	1 cut(s)	351
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	7, 363, 547
PleI	GAGTC	2 cut(s)	118, 176
PpsI	GAGTC	2 cut(s)	118, 176
PpuMI	RGGWCCY	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	401
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	200, 401
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	4 cut(s)	12, 53, 63, 387
SatI	GCNGC	3 cut(s)	6, 362, 546
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	2 cut(s)	200, 401
SchI	GAGTC	2 cut(s)	119, 176
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	9 cut(s)	10, 88, 230, 283, 370, 406, 455, 480, 512
SfaNI	GCATC	3 cut(s)	61, 341, 427
SinI	GGWCC	2 cut(s)	200, 401
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	3 cut(s)	13, 90, 497
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	2 cut(s)	206, 405
SstI	GAGCTC	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	320
TasI	AATT	3 cut(s)	13, 90, 497
Tru1I	TTAA	4 cut(s)	12, 53, 63, 387
Tru9I	TTAA	4 cut(s)	12, 53, 63, 387
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	3 cut(s)	5, 361, 545
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	549
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	200, 401
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	2 cut(s)	90, 497
XspI	CTAG	2 cut(s)	206, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.