Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005819

Physical Location & Seq

Genomic Coordinates Forward (+)

54749844 .. 54750746

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0403300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAGCTGGGCCTTTGAACCACCTTATCATATTTCAGTCGGTTTTGGGCTACAGCACCAATTTTTGCCCTTTACCTATATTAAAGGGCCAAACCTTCTCCAAGAGCTAGTTGTTATTAGGGTTTCTGCCGTTCTCTCTCCTCTCAACCGTCGCCGCGGAGCAGCCAAGCCAAGGAAGAAGAAGAAGATCAAGATGCCTTCACACAAGAGCCTCATCATCAAGAAGAAGCTTGGTAAGAAGATGAGGCAGAACAGGCCCATCCCTCACTGGATCCGTCTCAGGACTGACAACAAAATCAGGTACAATGCTAAGCGCAGGCACTGGCGCCGCACCAAGCTCGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

13.73

Weight (kDa)

12.0

Isoelectric Point (pI)

67.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L39	PF00832	73 - 113	2.4e-21	Ribosomal L39 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48380 AT1G48380
fragaria_vesca	FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410
malus_domestica	MD14G1245900.v1.1
prunus_persica	Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1
pyrus_communis	pycom14g20680
rosa_chinensis	RchiOBHm_Chr7g0177071
rosa_laevigata	RLG00000005559
rosa_multiflora	Rmu_sc0005310.1_g000026
rosa_roxburghii	Rroxscaffold_3G00276120
rosa_rugosa	Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500
rosa_samantha	Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000
rosa_wichuraiana	Rw7G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	324
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	154, 156, 328
AclWI	GGATC	2 cut(s)	265, 278
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	171, 339
AgsI	TTSAA	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	6, 106, 229, 337
AluI	AGCT	4 cut(s)	6, 106, 229, 337
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	265, 278
AlwNI	CAGNNNCTG	1 cut(s)	321
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	3 cut(s)	9, 86, 254
ApeKI	GCWGC	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	315, 327
AspS9I	GGNCC	3 cut(s)	9, 86, 255
AvaI	CYCGRG	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	113
BcgI	CGANNNNNNTGC	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	328
BisI	GCNGC	3 cut(s)	154, 162, 328
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	3 cut(s)	155, 163, 329
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	3 cut(s)	9, 86, 255
BmiI	GGNNCC	2 cut(s)	272, 326
BmsI	GCATC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	154, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 339
Bse1I	ACTGG	2 cut(s)	272, 326
BseDI	CCNNGG	2 cut(s)	154, 170
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	171, 339
BseMII	CTCAG	1 cut(s)	292
BseNI	ACTGG	2 cut(s)	272, 326
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	11, 88, 256
BshNI	GGYRCC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	171, 339
BsmAI	GTCTC	1 cut(s)	281
BsmBI	CGTCTC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	11, 88, 256
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	186, 270
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	3 cut(s)	154, 156, 328
BspANI	GGCC	3 cut(s)	11, 88, 256
BspCNI	CTCAG	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	272, 326
BspPI	GGATC	2 cut(s)	265, 278
BspT107I	GGYRCC	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	272, 326
BssECI	CCNNGG	2 cut(s)	154, 170
BssMI	GATC	2 cut(s)	186, 270
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	278, 309
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	2 cut(s)	315, 327
BstKTI	GATC	2 cut(s)	189, 273
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	186, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	11, 88, 256
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	265, 319
Cac8I	GCNNGC	1 cut(s)	317
CaiI	CAGNNNCTG	1 cut(s)	321
CfoI	GCGC	2 cut(s)	315, 327
Cfr13I	GGNCC	3 cut(s)	9, 86, 255
Cfr42I	CCGCGG	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	301
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	2 cut(s)	278, 309
DinI	GGCGCC	1 cut(s)	326
DpnI	GATC	2 cut(s)	188, 272
DpnII	GATC	2 cut(s)	186, 270
Eco130I	CCWWGG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	170
EgeI	GGCGCC	1 cut(s)	326
EheI	GGCGCC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	281
FaiI	YATR	2 cut(s)	30, 78
Fnu4HI	GCNGC	3 cut(s)	154, 162, 328
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	154, 162, 328
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	2 cut(s)	314, 326
GluI	GCNGC	3 cut(s)	154, 162, 328
GsaI	CCCAGC	1 cut(s)	10
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	3 cut(s)	11, 88, 256
HhaI	GCGC	2 cut(s)	315, 327
Hin1I	GRCGYC	1 cut(s)	325
Hin6I	GCGC	2 cut(s)	313, 325
HinP1I	GCGC	2 cut(s)	313, 325
HindIII	AAGCTT	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	3 cut(s)	190, 220, 280
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	2 cut(s)	104, 207
HpyCH4III	ACNGT	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	2 cut(s)	278, 309
Hsp92I	GRCGYC	1 cut(s)	325
HspAI	GCGC	2 cut(s)	313, 325
KasI	GGCGCC	1 cut(s)	324
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	186, 270
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	238, 253, 265, 283, 301, 307
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	107
MalI	GATC	2 cut(s)	188, 272
MboI	GATC	2 cut(s)	186, 270
MboII	GAAGA	6 cut(s)	187, 190, 193, 196, 235, 250
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	1 cut(s)	59
Mly113I	GGCGCC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	150, 221, 237, 273
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	253
NarI	GGCGCC	1 cut(s)	325
NdeII	GATC	2 cut(s)	186, 270
NlaIV	GGNNCC	2 cut(s)	272, 326
PkrI	GCNGC	3 cut(s)	155, 163, 329
PluTI	GGCGCC	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	272, 326
PspPI	GGNCC	3 cut(s)	9, 86, 255
PstNI	CAGNNNCTG	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SacII	CCGCGG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	154, 162, 328
Sau3AI	GATC	2 cut(s)	186, 270
Sau96I	GGNCC	3 cut(s)	9, 86, 255
SetI	ASST	8 cut(s)	8, 25, 77, 96, 108, 231, 302, 339
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	50
SfoI	GGCGCC	1 cut(s)	326
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	3 cut(s)	154, 156, 328
SspDI	GGCGCC	1 cut(s)	324
SspMI	CTAG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	149
TasI	AATT	1 cut(s)	59
TauI	GCSGC	2 cut(s)	156, 330
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	272, 326
TseI	GCWGC	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	272, 326
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.