Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005819

Physical Location & Seq

Genomic Coordinates Forward (+)

16243786 .. 16246228

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGATTGCTACCGTTAATCCAAATGGAATCCAAATGGCGCGAACCTCGTCATCGAAGAAGAAGCGCAAAGAAGAAGAGTATCCAAACCCAGAGGTGACGCAGCGCAAGAGGCTCAAAGCCCTCGCCTTCTCCAACAACCTACTCTCAGAGGTCCCTGCTAAGCCCCACGCGCCTTTCACCCCCTCAAACACTGTTGTTAAGCACCATGGCAAAGGCATTCTCAAGAAATCTCAGCGAAAGAACAGGTTCCTCTTCTCCTTCCCTGGCCTCCTTGCCCCCATTGGAGGCGGTAAGATCGGTGAGCTCAAGGATTTGGGCACCAAAAACCCCGTGTTATACCTCGATTTCTCTCAGAACAGGTATCTGACTATGCAGTTCCCTAGGGGTGGGAAGAGTGTCATGTGCGAGGACTACTTCGATAATATGATCGTATTTTCCGATGCTTGGTGGATTGGGACACAAGCAGAGAACCCCGAAGAAGCCCAACTTGATTTCCCTAAGGAACTTACTGAGGGACAACACACAGAATATGACTTTAAAGGTGGTGCAGGTTCAACATCTGCAAACAAGCAAAGTGATCGTAAAAATGAAACTACATATGTAGAACATTCCCCAAATGTTAAGGTTGAAGATAATGTATTAGATGATGGAAACAAGGATTTGATGAGAGCAACACCTGTTCGACATTCAGCAAGAACTGCCGGAAAACGATTCAAGTACTGGCCTAAACATTTTATTGCACTCACTAGATACTGTCATAAGAGATCAGAAGCTGGGGGAATTAAGTACACACATACTAAATATGCAAATTTTGGAAATGCTTCTTCTGGAGATGATGCTTTTGAAACCGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

32.08

Weight (kDa)

9.39

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48380 AT1G48380
fragaria_vesca	FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410
malus_domestica	MD14G1245900.v1.1
prunus_persica	Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1
pyrus_communis	pycom14g20680
rosa_chinensis	RchiOBHm_Chr7g0177071
rosa_laevigata	RLG00000005559
rosa_multiflora	Rmu_sc0005310.1_g000026
rosa_roxburghii	Rroxscaffold_3G00276120
rosa_rugosa	Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500
rosa_samantha	Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000
rosa_wichuraiana	Rw7G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	317
AccII	CGCG	2 cut(s)	40, 170
AciI	CCGC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	808
AfaI	GTAC	2 cut(s)	719, 788
AfiI	CCNNNNNNNGG	3 cut(s)	284, 386, 444
AgsI	TTSAA	4 cut(s)	555, 629, 715, 845
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	304, 773
AluI	AGCT	2 cut(s)	304, 773
Alw21I	GWGCWC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	265, 722
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	808
Asp700I	GAANNNNTTC	2 cut(s)	245, 820
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	4 cut(s)	40, 66, 105, 172
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	106, 169, 311
AvaII	GGWCC	1 cut(s)	151
AvrII	CCTAGG	1 cut(s)	380
AxyI	CCTNAGG	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	641
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	264
BciVI	GTATCC	1 cut(s)	90
BfaI	CTAG	2 cut(s)	381, 747
BfuAI	ACCTGC	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	101
BlnI	CCTAGG	1 cut(s)	380
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	102
BmcAI	AGTACT	1 cut(s)	719
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	3 cut(s)	153, 248, 319
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	430, 826
BpmI	CTGGAG	1 cut(s)	849
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	206, 290
BsaJI	CCNNGG	3 cut(s)	205, 262, 380
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 386, 444
Bse1I	ACTGG	1 cut(s)	725
Bse21I	CCTNAGG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	205, 262, 380
BseLI	CCNNNNNNNGG	3 cut(s)	284, 386, 444
BseMII	CTCAG	4 cut(s)	159, 245, 365, 501
BseNI	ACTGG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	773
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	2 cut(s)	40, 170
BshFI	GGCC	2 cut(s)	267, 724
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	3 cut(s)	137, 469, 528
BslI	CCNNNNNNNGG	3 cut(s)	284, 386, 444
BsmFI	GGGAC	3 cut(s)	137, 469, 528
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	267, 724
Bsp1286I	GDGCHC	2 cut(s)	306, 320
Bsp143I	GATC	4 cut(s)	294, 426, 577, 764
Bsp1720I	GCTNAGC	1 cut(s)	159
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	2 cut(s)	267, 724
BspCNI	CTCAG	4 cut(s)	158, 244, 364, 502
BspFNI	CGCG	2 cut(s)	40, 170
BspLI	GGNNCC	3 cut(s)	153, 248, 319
BspMI	ACCTGC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	725
BssECI	CCNNGG	3 cut(s)	205, 262, 380
BssMI	GATC	4 cut(s)	294, 426, 577, 764
BssT1I	CCWWGG	2 cut(s)	205, 380
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	13, 193, 755
Bst6I	CTCTTC	3 cut(s)	69, 257, 386
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstDEI	CTNAG	6 cut(s)	145, 159, 231, 351, 498, 510
BstDSI	CCRYGG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	40, 170
BstHHI	GCGC	4 cut(s)	40, 66, 105, 172
BstKTI	GATC	4 cut(s)	297, 429, 580, 767
BstMBI	GATC	4 cut(s)	294, 426, 577, 764
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 169, 698
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	2 cut(s)	40, 170
BstV1I	GCAGC	1 cut(s)	112
Bsu36I	CCTNAGG	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	267, 724
BtgI	CCRYGG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	539
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	4 cut(s)	40, 66, 105, 172
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	718, 787
CviAII	CATG	2 cut(s)	206, 400
CviJI	RGCY	8 cut(s)	112, 119, 163, 267, 304, 482, 724, 773
CviKI_1	RGCY	8 cut(s)	112, 119, 163, 267, 304, 482, 724, 773
CviQI	GTAC	2 cut(s)	718, 787
DdeI	CTNAG	6 cut(s)	145, 159, 231, 351, 498, 510
DpnI	GATC	4 cut(s)	296, 428, 579, 766
DpnII	GATC	4 cut(s)	294, 426, 577, 764
DraI	TTTAAA	1 cut(s)	538
Eam1104I	CTCTTC	3 cut(s)	69, 257, 386
EarI	CTCTTC	3 cut(s)	69, 257, 386
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	2 cut(s)	205, 380
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	304
Eco81I	CCTNAGG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	2 cut(s)	205, 380
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	2 cut(s)	205, 380
FaeI	CATG	2 cut(s)	209, 403
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	3 cut(s)	137, 469, 528
FatI	CATG	2 cut(s)	205, 399
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	2 cut(s)	381, 747
GlaI	GCGC	4 cut(s)	39, 65, 104, 171
GluI	GCNGC	1 cut(s)	101
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	2 cut(s)	267, 724
HapII	CCGG	1 cut(s)	702
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	4 cut(s)	40, 66, 105, 172
Hin1II	CATG	2 cut(s)	209, 403
Hin6I	GCGC	4 cut(s)	38, 64, 103, 170
HinP1I	GCGC	4 cut(s)	38, 64, 103, 170
HinfI	GANTC	2 cut(s)	27, 711
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	3 cut(s)	106, 169, 311
Hpy166II	GTNNAC	1 cut(s)	789
Hpy188I	TCNGA	5 cut(s)	148, 354, 366, 439, 769
Hpy188III	TCNNGA	2 cut(s)	223, 828
Hpy8I	GTNNAC	1 cut(s)	789
HpyAV	CCTTC	2 cut(s)	136, 268
HpyCH4III	ACNGT	3 cut(s)	13, 193, 755
HpyCH4V	TGCA	5 cut(s)	373, 548, 563, 740, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 169, 698
HpyF3I	CTNAG	6 cut(s)	145, 159, 231, 351, 498, 510
Hsp92II	CATG	2 cut(s)	209, 403
HspAI	GCGC	4 cut(s)	38, 64, 103, 170
Kzo9I	GATC	4 cut(s)	294, 426, 577, 764
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	430, 826
MaeI	CTAG	2 cut(s)	381, 747
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	4 cut(s)	296, 428, 579, 766
MboI	GATC	4 cut(s)	294, 426, 577, 764
MboII	GAAGA	9 cut(s)	67, 70, 83, 86, 244, 403, 488, 641, 816
MhlI	GDGCHC	2 cut(s)	306, 320
MluCI	AATT	2 cut(s)	780, 808
MmeI	TCCRAC	1 cut(s)	156
MroXI	GAANNNNTTC	2 cut(s)	245, 820
MseI	TTAA	6 cut(s)	15, 198, 537, 621, 783, 856
MspI	CCGG	1 cut(s)	702
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	2 cut(s)	40, 170
MwoI	GCNNNNNNNGC	3 cut(s)	109, 169, 698
NcoI	CCATGG	1 cut(s)	205
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	4 cut(s)	294, 426, 577, 764
NlaIII	CATG	2 cut(s)	209, 403
NlaIV	GGNNCC	3 cut(s)	153, 248, 319
NmuCI	GTSAC	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	2 cut(s)	245, 820
PfeI	GAWTC	2 cut(s)	27, 711
PkrI	GCNGC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	153, 248, 319
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	719, 788
RsaNI	GTAC	2 cut(s)	718, 787
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	6 cut(s)	15, 198, 537, 621, 783, 856
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	4 cut(s)	294, 426, 577, 764
Sau96I	GGNCC	1 cut(s)	151
ScaI	AGTACT	1 cut(s)	719
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	2 cut(s)	306, 320
SfaNI	GCATC	2 cut(s)	430, 826
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	2 cut(s)	221, 305
SmoI	CTYRAG	2 cut(s)	221, 305
Sse9I	AATT	2 cut(s)	780, 808
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	2 cut(s)	381, 747
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	2 cut(s)	205, 380
TaaI	ACNGT	3 cut(s)	13, 193, 755
TaqI	TCGA	4 cut(s)	53, 342, 417, 682
TasI	AATT	2 cut(s)	780, 808
TatI	WGTACW	2 cut(s)	717, 786
TfiI	GAWTC	2 cut(s)	27, 711
Tru1I	TTAA	6 cut(s)	15, 198, 537, 621, 783, 856
Tru9I	TTAA	6 cut(s)	15, 198, 537, 621, 783, 856
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	808
XmaJI	CCTAGG	1 cut(s)	380
XmnI	GAANNNNTTC	2 cut(s)	245, 820
XspI	CTAG	2 cut(s)	381, 747
ZrmI	AGTACT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.